Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46890 * 2 1 4 4 N 1.28444 * 125.19372 * 265.57331 * 3 2 1 5 5 C 1.30856 * 110.93150 * 180.16230 * 4 3 2 6 6 C 1.39675 * 107.86022 * 359.61342 * 5 4 3 7 7 C 1.36605 * 125.19186 * 85.31063 * 3 2 1 8 8 C 1.47159 * 126.88245 * 359.97438 * 7 3 2 9 9 O 1.21636 * 120.00118 * 353.16384 * 8 7 3 10 10 N 1.34777 * 120.00074 * 173.16646 * 8 7 3 11 11 C 1.46499 * 119.99653 * 354.47115 * 10 8 7 12 12 C 1.46496 * 120.00019 * 174.47599 * 10 8 7 13 13 C 1.53005 * 109.47115 * 89.99888 * 12 10 8 14 14 N 1.46903 * 109.46730 * 180.02562 * 13 12 10 15 15 C 1.46899 * 111.00482 * 66.04527 * 14 13 12 16 16 C 1.46905 * 110.99615 * 189.99814 * 14 13 12 17 17 C 1.50708 * 109.47033 * 169.99893 * 16 14 13 18 18 O 1.21291 * 119.99848 * 0.02562 * 17 16 14 19 19 N 1.34772 * 120.00152 * 179.97438 * 17 16 14 20 20 C 1.37094 * 120.00199 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99715 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99849 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00097 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47148 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46950 * 119.99923 * 24 22 20 27 27 H 1.48496 * 109.47103 * 240.00129 * 24 22 20 28 28 H 1.08991 * 109.47134 * 64.90443 * 1 2 3 29 29 H 1.09002 * 109.47175 * 184.90766 * 1 2 3 30 30 H 1.08998 * 109.47068 * 304.90295 * 1 2 3 31 31 H 1.08993 * 109.47322 * 239.99842 * 2 1 3 32 32 H 1.09002 * 109.47577 * 119.99588 * 2 1 3 33 33 H 1.07999 * 126.07028 * 179.87830 * 5 4 3 34 34 H 1.08002 * 127.31923 * 180.24711 * 6 5 4 35 35 H 1.08999 * 109.46874 * 84.19394 * 11 10 8 36 36 H 1.09002 * 109.46730 * 204.18813 * 11 10 8 37 37 H 1.08999 * 109.47497 * 324.18691 * 11 10 8 38 38 H 1.09000 * 109.46977 * 209.99798 * 12 10 8 39 39 H 1.08994 * 109.47423 * 329.99579 * 12 10 8 40 40 H 1.08997 * 109.46688 * 299.99583 * 13 12 10 41 41 H 1.08995 * 109.47338 * 60.00109 * 13 12 10 42 42 H 1.08999 * 109.47042 * 59.99634 * 15 14 13 43 43 H 1.08998 * 109.47373 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.46771 * 300.00254 * 15 14 13 45 45 H 1.08998 * 109.47084 * 289.99773 * 16 14 13 46 46 H 1.08998 * 109.47293 * 50.00139 * 16 14 13 47 47 H 0.97006 * 119.99754 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99785 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3414 2.0522 -1.0465 5 6 2.7439 3.2550 -0.7248 6 6 2.6655 3.3757 0.6645 7 6 2.1946 2.1539 1.1126 8 6 1.9352 1.7652 2.5081 9 8 1.4031 0.6993 2.7536 10 7 2.2872 2.5902 3.5140 11 6 3.0357 3.8166 3.2276 12 6 1.9215 2.2606 4.8937 13 6 3.0342 1.4257 5.5308 14 7 2.6670 1.0947 6.9141 15 6 1.4984 0.2054 6.9503 16 6 3.8027 0.5012 7.6325 17 6 3.4727 0.4022 9.0997 18 8 2.3971 0.7877 9.5067 19 7 4.3723 -0.1156 9.9593 20 6 4.0723 -0.2051 11.2940 21 1 3.1149 0.1389 11.6565 22 6 5.0001 -0.7385 12.1803 23 7 6.1648 -1.1576 11.7391 24 14 4.5916 -0.8599 13.9991 25 1 3.2270 -0.3246 14.2367 26 1 4.6462 -2.2815 14.4249 27 1 5.5766 -0.0706 14.7814 28 1 -0.3633 0.4358 -0.9306 29 1 -0.3633 -1.0239 0.0879 30 1 -0.3633 0.5880 0.8428 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0736 4.0202 -1.4120 34 1 2.9184 4.2391 1.2620 35 1 2.3418 4.6079 2.9441 36 1 3.5895 4.1200 4.1161 37 1 3.7328 3.6342 2.4097 38 1 1.7858 3.1801 5.4632 39 1 0.9923 1.6908 4.8971 40 1 3.1697 0.5063 4.9613 41 1 3.9633 1.9956 5.5275 42 1 1.7281 -0.7183 6.4192 43 1 1.2483 -0.0241 7.9861 44 1 0.6518 0.6983 6.4724 45 1 4.0023 -0.4947 7.2370 46 1 4.6843 1.1283 7.4999 47 1 5.2323 -0.4242 9.6337 48 1 6.8126 -1.5296 12.3579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698985127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = 16.107428 kcal Electronic energy + Delta-G solvation = -29075.539285 eV Core-core repulsion = 24974.765294 eV Total energy + Delta-G solvation = -4100.773991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.58628 -40.83873 -40.27976 -38.12889 -36.84245 -35.85583 -35.30324 -33.28402 -32.68117 -30.76194 -30.54129 -29.12430 -28.02555 -27.06113 -25.84372 -24.90525 -23.43438 -22.83991 -21.80595 -20.99451 -20.35575 -19.85035 -18.37668 -17.92927 -17.67612 -17.19812 -17.04545 -16.61964 -16.50722 -16.08856 -15.99911 -15.65050 -15.59871 -15.41503 -14.99564 -14.89827 -14.61739 -14.18445 -14.01404 -13.91947 -13.76802 -13.61163 -13.45368 -13.17064 -13.06655 -12.99848 -12.65119 -12.60922 -12.54835 -12.38822 -12.28010 -12.10897 -11.88949 -11.55605 -11.45985 -11.17524 -10.34760 -10.27697 -9.99740 -9.99152 -9.76480 -9.29103 -8.45862 -5.94223 0.20882 1.29868 1.36994 1.42265 1.56472 1.66521 1.95646 2.05753 2.10668 2.29804 2.82412 3.20855 3.32650 3.42725 3.55955 3.91204 3.97628 4.06437 4.08704 4.19784 4.21484 4.25294 4.30644 4.35712 4.46718 4.50475 4.52499 4.58592 4.61832 4.65101 4.69725 4.78250 4.81542 4.85696 4.90279 4.97555 5.07020 5.17273 5.36852 5.42469 5.57494 5.74935 5.83320 6.02830 6.13225 6.19760 6.61419 6.90537 7.10458 7.14026 7.57262 8.12995 8.71829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.001892 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.050282 B =14794.882918 C =15098.021145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.113 3.887 3 N -0.267 5.267 4 N -0.302 5.302 5 C -0.008 4.008 6 C -0.190 4.190 7 C -0.060 4.060 8 C 0.580 3.420 9 O -0.570 6.570 10 N -0.593 5.593 11 C 0.050 3.950 12 C 0.129 3.871 13 C 0.049 3.951 14 N -0.527 5.527 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.270 1.270 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.218 0.782 34 H 0.209 0.791 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 9.699 -26.349 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.006 4.006 3 N -0.056 5.056 4 N -0.135 5.135 5 C -0.184 4.184 6 C -0.218 4.218 7 C -0.187 4.187 8 C 0.368 3.632 9 O -0.450 6.450 10 N -0.324 5.324 11 C -0.091 4.091 12 C 0.006 3.994 13 C -0.080 4.080 14 N -0.251 5.251 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.235 0.765 34 H 0.226 0.774 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.720 8.900 -26.510 28.359 hybrid contribution 0.639 -0.853 1.148 1.566 sum -4.081 8.047 -25.361 26.919 Atomic orbital electron populations 1.21993 0.92943 1.04273 1.01909 1.22159 0.96615 0.76356 1.05509 1.46035 1.44786 1.12763 1.02002 1.73189 1.17709 1.08342 1.14259 1.24291 1.03614 0.94438 0.96040 1.23481 1.04552 0.97840 0.95904 1.21476 1.12907 0.95055 0.89302 1.17258 0.78458 0.83544 0.83917 1.90796 1.45428 1.23746 1.85072 1.47515 1.55396 1.23888 1.05632 1.22835 0.96852 0.84796 1.04641 1.21397 0.97118 1.01105 0.79793 1.22449 0.99769 0.98917 0.86826 1.61502 1.05025 1.44840 1.13743 1.22413 0.93393 0.93984 1.02085 1.21747 0.95061 0.99995 0.90509 1.20690 0.85173 0.82172 0.88936 1.90463 1.25610 1.53857 1.79858 1.41940 1.16868 1.55314 1.07136 1.19692 1.02354 1.40081 0.83782 0.90228 1.26046 0.94819 0.96081 1.04517 1.69681 1.07098 1.41940 1.37545 0.84865 0.78287 0.78201 0.76951 1.19750 1.19786 1.19560 0.91775 0.88538 0.93664 0.86755 0.88502 0.76512 0.77438 0.89498 0.88800 0.88415 0.87475 0.91264 0.95767 0.88857 0.96291 0.92167 0.90443 0.92175 0.86759 0.77076 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.14 71.98 0.73 -1.81 16 2 C 0.11 2.03 6.32 86.38 0.55 2.57 16 3 N -0.27 -5.51 3.35 -334.70 -1.12 -6.63 16 4 N -0.30 -5.96 11.90 -57.14 -0.68 -6.64 16 5 C -0.01 -0.12 12.03 85.19 1.02 0.91 16 6 C -0.19 -2.46 8.87 22.66 0.20 -2.26 16 7 C -0.06 -1.18 6.79 40.78 0.28 -0.90 16 8 C 0.58 13.19 7.63 86.59 0.66 13.85 16 9 O -0.57 -16.60 13.99 -4.15 -0.06 -16.65 16 10 N -0.59 -10.57 2.87 -850.98 -2.45 -13.02 16 11 C 0.05 0.43 8.67 127.77 1.11 1.54 16 12 C 0.13 2.75 5.26 86.38 0.45 3.21 16 13 C 0.05 1.21 5.28 86.30 0.46 1.67 16 14 N -0.53 -17.16 4.50 -927.03 -4.17 -21.34 16 15 C 0.03 1.00 8.96 127.69 1.14 2.15 16 16 C 0.06 2.05 5.45 85.56 0.47 2.51 16 17 C 0.44 21.16 7.48 87.66 0.66 21.82 16 18 O -0.61 -33.65 13.91 -3.06 -0.04 -33.70 16 19 N -0.58 -29.64 5.29 -306.99 -1.62 -31.26 16 20 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 23 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 24 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.96 7.67 -2.39 -0.02 0.94 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.97 6.76 -2.39 -0.02 1.96 16 33 H 0.22 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.21 1.14 4.60 -2.91 -0.01 1.13 16 35 H 0.09 0.43 7.43 -2.39 -0.02 0.41 16 36 H 0.09 0.63 8.03 -2.39 -0.02 0.61 16 37 H 0.10 0.67 5.27 -2.39 -0.01 0.65 16 38 H 0.11 2.00 8.07 -2.39 -0.02 1.98 16 39 H 0.07 1.76 5.91 -2.39 -0.01 1.75 16 40 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 41 H 0.09 1.94 7.93 -2.39 -0.02 1.92 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 2.51 5.82 -2.39 -0.01 2.50 16 44 H 0.08 2.35 6.47 -2.39 -0.02 2.34 16 45 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 46 H 0.11 3.43 7.93 -2.39 -0.02 3.41 16 47 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -75.99 389.93 1.43 -74.56 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.26 Total: 32.18 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 9.00 Total: 26.98 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -9.76 Total: -128.48 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.10 Total: -50.35 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.99 1.43 -74.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.666 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds