Wall clock time and date at job start Tue Mar 31 2020 19:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 N 1.46899 * 109.46993 * 180.02562 * 5 4 2 7 7 C 1.46906 * 111.00033 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47241 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99319 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99732 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47454 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46852 * 120.00224 * 15 13 11 18 18 H 1.48503 * 109.47033 * 239.99653 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21277 * 120.00549 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99847 * 180.02562 * 20 19 2 23 23 H 1.08997 * 109.47148 * 60.00429 * 22 20 19 24 24 C 1.52998 * 109.47303 * 299.99735 * 22 20 19 25 25 N 1.46507 * 109.47145 * 179.97438 * 22 20 19 26 26 C 1.34943 * 126.03228 * 84.71499 * 25 22 20 27 27 C 1.35325 * 107.74132 * 179.84282 * 26 25 22 28 28 C 1.39870 * 107.92066 * 0.41987 * 27 26 25 29 29 N 1.30838 * 108.20068 * 359.74237 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46966 * 300.00238 * 5 4 2 36 36 H 1.08998 * 109.46717 * 60.00358 * 5 4 2 37 37 H 1.00902 * 111.00200 * 303.95826 * 6 5 4 38 38 H 1.08998 * 109.46716 * 300.00033 * 7 6 5 39 39 H 1.09002 * 109.46367 * 60.00145 * 7 6 5 40 40 H 0.96990 * 120.00200 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00330 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 43 43 H 1.08992 * 109.46920 * 300.00242 * 24 22 20 44 44 H 1.09002 * 109.46949 * 60.00291 * 24 22 20 45 45 H 1.09004 * 109.46943 * 179.97438 * 24 22 20 46 46 H 1.07992 * 126.13195 * 0.02562 * 26 25 22 47 47 H 1.07998 * 126.04070 * 180.16398 * 27 26 25 48 48 H 1.07998 * 125.89779 * 179.71858 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 7 4.0545 -1.3050 -2.5135 7 6 5.5182 -1.2224 -2.6084 8 6 5.9825 -1.9411 -3.8490 9 8 5.1738 -2.4705 -4.5817 10 7 7.2965 -1.9964 -4.1436 11 6 7.7188 -2.6498 -5.2725 12 1 6.9986 -3.1205 -5.9254 13 6 9.0736 -2.7074 -5.5761 14 7 9.9499 -2.1351 -4.7815 15 14 9.6490 -3.5983 -7.1138 16 1 8.4744 -4.1523 -7.8338 17 1 10.3670 -2.6456 -7.9983 18 1 10.5633 -4.7045 -6.7321 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8590 1.1585 2.4116 22 6 2.6499 -0.7287 3.5874 23 1 3.6492 -1.1204 3.3978 24 6 1.7064 -1.8830 3.9313 25 7 2.6996 0.2127 4.7088 26 6 1.6717 0.5335 5.5222 27 6 2.1267 1.4302 6.4278 28 6 3.4765 1.6727 6.1526 29 7 3.8209 0.9435 5.1223 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 3.8532 0.4372 -1.3573 36 1 3.9995 -1.0727 -0.4260 37 1 3.7451 -2.2653 -2.5287 38 1 5.8204 -0.1764 -2.6603 39 1 5.9659 -1.6869 -1.7298 40 1 7.9432 -1.5740 -3.5571 41 1 10.8955 -2.1749 -4.9936 42 1 2.2491 -1.6318 1.1525 43 1 0.7071 -1.4912 4.1209 44 1 1.6698 -2.5833 3.0969 45 1 2.0704 -2.3970 4.8210 46 1 0.6669 0.1422 5.4630 47 1 1.5486 1.8821 7.2202 48 1 4.1226 2.3459 6.6964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699082697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:24 Heat of formation + Delta-G solvation = 4.863947 kcal Electronic energy + Delta-G solvation = -28267.209868 eV Core-core repulsion = 24165.948323 eV Total energy + Delta-G solvation = -4101.261545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61632 -40.13691 -38.35077 -37.10482 -35.08307 -35.04725 -33.84608 -31.94260 -31.23068 -30.33478 -29.73547 -29.26971 -26.29075 -25.45369 -24.15923 -22.73785 -21.96716 -21.32588 -21.05433 -20.26687 -19.25798 -18.06851 -17.86851 -17.59612 -16.48368 -16.20000 -15.75898 -15.51623 -15.03368 -14.85775 -14.62552 -14.41496 -14.13233 -13.96201 -13.91647 -13.75715 -13.67685 -13.28095 -13.16575 -13.05629 -12.89622 -12.67781 -12.33221 -12.27998 -12.18476 -11.73777 -11.54488 -11.37844 -11.21581 -11.10465 -11.01185 -10.93652 -10.41182 -10.35582 -10.23914 -9.64721 -9.53646 -9.50199 -8.85018 -8.49079 -8.09938 -7.97749 -6.43165 -3.84168 1.55362 2.00783 2.14224 2.64440 2.80878 3.15214 3.25870 3.33045 3.88500 3.91781 3.99123 4.13412 4.23477 4.30117 4.47962 4.66517 4.69481 4.72305 4.84014 4.91635 4.98328 5.11260 5.18291 5.23176 5.24796 5.27468 5.32798 5.43458 5.44685 5.52109 5.66065 5.73244 5.75858 5.82142 5.88108 5.95943 5.99899 6.16184 6.24783 6.38185 6.64638 7.03611 7.16144 7.44990 7.53965 7.61612 7.74824 8.04872 8.59434 9.16271 9.52660 10.03804 10.74607 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.001815 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.957781 B =15422.140719 C =16584.947626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.718 5.718 20 C 0.502 3.498 21 O -0.519 6.519 22 C 0.142 3.858 23 H 0.129 0.871 24 C -0.160 4.160 25 N -0.356 5.356 26 C 0.067 3.933 27 C -0.274 4.274 28 C 0.047 3.953 29 N -0.290 5.290 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.348 0.652 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.401 0.599 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.169 0.831 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 2.450 22.576 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.163 4.163 5 C -0.071 4.071 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.371 5.371 20 C 0.286 3.714 21 O -0.393 6.393 22 C 0.035 3.965 23 H 0.147 0.853 24 C -0.219 4.219 25 N -0.138 5.138 26 C -0.079 4.079 27 C -0.304 4.304 28 C -0.139 4.139 29 N -0.110 5.110 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.167 0.833 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.845 3.087 20.762 27.550 hybrid contribution 0.577 -0.888 0.829 1.345 sum -17.267 2.199 21.591 27.734 Atomic orbital electron populations 1.22149 0.94852 1.02232 1.02707 1.21042 0.94121 0.97771 0.83180 0.89126 1.21888 0.95926 1.01261 0.97210 1.21969 0.94191 0.99907 0.90993 1.60063 1.09880 1.21663 1.38497 1.21672 0.88307 1.01350 0.96878 1.19802 0.83344 0.85933 0.88339 1.90518 1.53323 1.50629 1.52346 1.41876 1.05419 1.48947 1.23776 1.19761 0.91980 1.30243 1.00931 0.87840 1.25281 0.95638 0.97833 0.99266 1.69619 1.02500 1.44293 1.37834 0.85791 0.78751 0.78823 0.80919 1.19207 1.20722 1.20769 1.46095 1.67443 1.14110 1.09499 1.20699 0.78343 0.87712 0.84684 1.90776 1.48620 1.15389 1.84561 1.21102 1.03725 0.88179 0.83519 0.85336 1.22158 0.99231 0.96080 1.04389 1.48177 1.07721 1.34117 1.23780 1.22388 0.94274 0.98757 0.92473 1.21474 0.96224 1.06791 1.05881 1.23897 0.95992 0.98870 0.95175 1.77402 1.08079 1.10103 1.15377 0.92311 0.92292 0.91181 0.91212 0.88926 0.91065 0.95694 0.83301 0.89628 0.93953 0.77450 0.91892 0.76449 0.90859 0.89215 0.89969 0.81409 0.83527 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.02 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.12 -1.09 5.01 -26.73 -0.13 -1.22 16 5 C 0.06 0.67 5.57 -3.82 -0.02 0.65 16 6 N -0.67 -10.35 6.13 -115.05 -0.70 -11.05 16 7 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 8 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 9 O -0.58 -15.78 15.78 5.55 0.09 -15.70 16 10 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 11 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 15 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.72 -5.16 4.42 -53.81 -0.24 -5.40 16 20 C 0.50 4.81 7.19 -10.99 -0.08 4.73 16 21 O -0.52 -7.34 16.07 5.56 0.09 -7.25 16 22 C 0.14 1.06 3.73 -69.08 -0.26 0.80 16 23 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 24 C -0.16 -0.60 8.74 37.16 0.32 -0.27 16 25 N -0.36 -3.63 3.02 -55.99 -0.17 -3.79 16 26 C 0.07 0.58 10.57 -17.22 -0.18 0.40 16 27 C -0.27 -2.39 10.80 -40.01 -0.43 -2.82 16 28 C 0.05 0.47 12.03 -17.36 -0.21 0.26 16 29 N -0.29 -3.58 12.58 30.62 0.39 -3.19 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.02 0.26 7.75 -51.93 -0.40 -0.14 16 37 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.40 1.87 8.02 -40.82 -0.33 1.54 16 43 H 0.07 0.26 7.16 -51.93 -0.37 -0.11 16 44 H 0.09 0.16 7.56 -51.93 -0.39 -0.23 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.17 0.94 7.27 -52.49 -0.38 0.56 16 47 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -36.85 406.75 -7.45 -44.30 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -7.51 Total: 12.39 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.17 Total: 5.83 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.06 Total: -61.72 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.18 Total: -22.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.85 -7.45 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.165 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds