Wall clock time and date at job start Tue Mar 31 2020 19:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 N 1.46899 * 109.46993 * 180.02562 * 5 4 2 7 7 C 1.46906 * 111.00033 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47241 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99319 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99732 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47454 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46852 * 120.00224 * 15 13 11 18 18 H 1.48503 * 109.47033 * 239.99653 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21277 * 120.00549 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99847 * 180.02562 * 20 19 2 23 23 H 1.08997 * 109.47148 * 60.00429 * 22 20 19 24 24 C 1.52998 * 109.47303 * 299.99735 * 22 20 19 25 25 N 1.46507 * 109.47145 * 179.97438 * 22 20 19 26 26 C 1.34943 * 126.03228 * 84.71499 * 25 22 20 27 27 C 1.35325 * 107.74132 * 179.84282 * 26 25 22 28 28 C 1.39870 * 107.92066 * 0.41987 * 27 26 25 29 29 N 1.30838 * 108.20068 * 359.74237 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46966 * 300.00238 * 5 4 2 36 36 H 1.08998 * 109.46717 * 60.00358 * 5 4 2 37 37 H 1.00902 * 111.00200 * 303.95826 * 6 5 4 38 38 H 1.08998 * 109.46716 * 300.00033 * 7 6 5 39 39 H 1.09002 * 109.46367 * 60.00145 * 7 6 5 40 40 H 0.96990 * 120.00200 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00330 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 43 43 H 1.08992 * 109.46920 * 300.00242 * 24 22 20 44 44 H 1.09002 * 109.46949 * 60.00291 * 24 22 20 45 45 H 1.09004 * 109.46943 * 179.97438 * 24 22 20 46 46 H 1.07992 * 126.13195 * 0.02562 * 26 25 22 47 47 H 1.07998 * 126.04070 * 180.16398 * 27 26 25 48 48 H 1.07998 * 125.89779 * 179.71858 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 7 4.0545 -1.3050 -2.5135 7 6 5.5182 -1.2224 -2.6084 8 6 5.9825 -1.9411 -3.8490 9 8 5.1738 -2.4705 -4.5817 10 7 7.2965 -1.9964 -4.1436 11 6 7.7188 -2.6498 -5.2725 12 1 6.9986 -3.1205 -5.9254 13 6 9.0736 -2.7074 -5.5761 14 7 9.9499 -2.1351 -4.7815 15 14 9.6490 -3.5983 -7.1138 16 1 8.4744 -4.1523 -7.8338 17 1 10.3670 -2.6456 -7.9983 18 1 10.5633 -4.7045 -6.7321 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8590 1.1585 2.4116 22 6 2.6499 -0.7287 3.5874 23 1 3.6492 -1.1204 3.3978 24 6 1.7064 -1.8830 3.9313 25 7 2.6996 0.2127 4.7088 26 6 1.6717 0.5335 5.5222 27 6 2.1267 1.4302 6.4278 28 6 3.4765 1.6727 6.1526 29 7 3.8209 0.9435 5.1223 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 3.8532 0.4372 -1.3573 36 1 3.9995 -1.0727 -0.4260 37 1 3.7451 -2.2653 -2.5287 38 1 5.8204 -0.1764 -2.6603 39 1 5.9659 -1.6869 -1.7298 40 1 7.9432 -1.5740 -3.5571 41 1 10.8955 -2.1749 -4.9936 42 1 2.2491 -1.6318 1.1525 43 1 0.7071 -1.4912 4.1209 44 1 1.6698 -2.5833 3.0969 45 1 2.0704 -2.3970 4.8210 46 1 0.6669 0.1422 5.4630 47 1 1.5486 1.8821 7.2202 48 1 4.1226 2.3459 6.6964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699082697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:23 Heat of formation + Delta-G solvation = -23.974107 kcal Electronic energy + Delta-G solvation = -28268.460380 eV Core-core repulsion = 24165.948323 eV Total energy + Delta-G solvation = -4102.512057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28109 -40.87956 -40.16724 -38.05391 -36.33441 -35.74003 -35.64874 -33.30268 -32.70379 -31.02303 -30.49685 -30.05366 -27.80772 -26.06759 -25.71477 -23.62749 -22.82784 -21.99287 -21.80226 -21.10096 -20.89282 -19.92424 -18.70326 -18.25047 -17.85714 -17.28330 -16.85322 -16.52402 -16.42137 -16.00479 -15.69239 -15.49285 -15.38397 -15.13921 -14.94193 -14.70681 -14.44390 -14.30491 -13.88202 -13.80381 -13.60688 -13.50767 -13.43174 -13.35012 -13.19912 -12.95323 -12.81989 -12.63766 -12.42397 -12.29099 -12.13369 -12.07290 -11.82180 -11.64516 -11.52583 -11.18384 -10.39106 -10.36655 -10.20063 -10.03367 -9.51925 -9.34589 -8.48133 -5.97207 0.88235 1.36075 1.40355 1.41544 1.45234 1.55947 1.97189 2.02921 2.16757 2.28056 2.86431 3.19012 3.40108 3.47500 3.62021 3.79646 3.87334 3.95955 4.00808 4.13599 4.17578 4.28581 4.40599 4.43715 4.50536 4.56144 4.58315 4.62210 4.65868 4.71581 4.78918 4.87619 4.93596 5.04032 5.07934 5.14975 5.17859 5.29778 5.39942 5.46558 5.73083 5.86314 6.05774 6.07448 6.41300 6.44549 6.57910 6.75861 7.09367 7.10824 7.54219 8.08886 8.69489 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.001815 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.957781 B =15422.140719 C =16584.947626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.064 0.936 4 C -0.112 4.112 5 C 0.061 3.939 6 N -0.682 5.682 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.621 6.621 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.921 5.921 15 Si 0.995 3.005 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.270 1.270 19 N -0.703 5.703 20 C 0.503 3.497 21 O -0.571 6.571 22 C 0.138 3.862 23 H 0.133 0.867 24 C -0.153 4.153 25 N -0.364 5.364 26 C 0.062 3.938 27 C -0.286 4.286 28 C 0.037 3.963 29 N -0.341 5.341 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.348 0.652 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.416 0.584 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.197 0.803 47 H 0.169 0.831 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.944 1.257 23.330 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.067 4.067 6 N -0.314 5.314 7 C -0.068 4.068 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.197 1.197 18 H -0.195 1.195 19 N -0.356 5.356 20 C 0.288 3.712 21 O -0.449 6.449 22 C 0.032 3.968 23 H 0.151 0.849 24 C -0.211 4.211 25 N -0.147 5.147 26 C -0.084 4.084 27 C -0.314 4.314 28 C -0.149 4.149 29 N -0.161 5.161 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.167 0.833 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.214 0.786 47 H 0.186 0.814 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.638 1.872 21.534 28.541 hybrid contribution 0.778 -0.486 0.615 1.104 sum -17.860 1.386 22.149 28.487 Atomic orbital electron populations 1.22080 0.93727 1.03252 1.02198 1.20883 0.94875 0.96448 0.83341 0.91794 1.21774 0.93830 1.02443 0.97021 1.22018 0.95915 0.98865 0.89937 1.60043 1.08403 1.22006 1.40987 1.21517 0.89917 1.01062 0.94331 1.20846 0.82341 0.84819 0.89444 1.90486 1.54099 1.52069 1.54128 1.41958 1.06344 1.49301 1.23507 1.19727 0.92358 1.32031 1.02205 0.90153 1.26083 0.95201 0.98119 1.02046 1.69680 1.02938 1.44584 1.39009 0.84844 0.78076 0.77978 0.77272 1.19643 1.19742 1.19516 1.45967 1.66400 1.14723 1.08552 1.21099 0.77431 0.87103 0.85595 1.90754 1.51117 1.17654 1.85396 1.21369 1.04853 0.88451 0.82129 0.84896 1.22204 0.98339 0.94846 1.05688 1.48421 1.07548 1.34324 1.24391 1.22958 0.95132 0.98407 0.91857 1.21854 0.95973 1.06985 1.06636 1.24387 0.97104 0.98648 0.94765 1.77307 1.10055 1.11842 1.16943 0.90454 0.93686 0.90848 0.89212 0.89515 0.92082 0.94116 0.83283 0.88563 0.91537 0.77048 0.91296 0.74576 0.90412 0.86769 0.89277 0.78616 0.81356 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.48 71.98 0.68 -1.35 16 2 C 0.15 2.30 2.57 44.99 0.12 2.42 16 3 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 4 C -0.11 -1.74 5.01 30.59 0.15 -1.59 16 5 C 0.06 1.29 5.57 86.30 0.48 1.77 16 6 N -0.68 -20.11 6.13 -517.92 -3.17 -23.29 16 7 C 0.06 2.18 6.17 85.56 0.53 2.71 16 8 C 0.44 20.72 7.82 87.66 0.69 21.41 16 9 O -0.62 -34.02 15.78 -3.07 -0.05 -34.07 16 10 N -0.57 -29.53 5.29 -306.97 -1.62 -31.15 16 11 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 12 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.92 -49.92 13.05 21.67 0.28 -49.64 16 15 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 19 N -0.70 -8.82 4.42 -442.54 -1.96 -10.77 16 20 C 0.50 9.19 7.19 87.66 0.63 9.82 16 21 O -0.57 -16.35 16.07 -3.02 -0.05 -16.40 16 22 C 0.14 1.90 3.73 44.24 0.16 2.06 16 23 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 24 C -0.15 -0.74 8.74 71.98 0.63 -0.11 16 25 N -0.36 -7.24 3.02 -331.05 -1.00 -8.24 16 26 C 0.06 1.01 10.57 83.54 0.88 1.89 16 27 C -0.29 -4.73 10.80 21.99 0.24 -4.50 16 28 C 0.04 0.73 12.03 85.24 1.03 1.75 16 29 N -0.34 -8.52 12.58 -57.02 -0.72 -9.24 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 0.75 7.75 -2.39 -0.02 0.73 16 37 H 0.35 10.26 8.43 -89.69 -0.76 9.51 16 38 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.40 19.43 7.90 -92.72 -0.73 18.70 16 41 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.42 2.62 8.02 -92.71 -0.74 1.88 16 43 H 0.08 0.34 7.16 -2.39 -0.02 0.32 16 44 H 0.11 -0.01 7.56 -2.39 -0.02 -0.03 16 45 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.20 1.79 7.27 -2.91 -0.02 1.77 16 47 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -81.99 406.75 0.00 -81.98 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -1.24 Total: 38.12 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.50 Total: 17.80 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -8.19 Total: -132.33 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.10 Total: -50.47 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -81.99 0.00 -81.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.009 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds