Wall clock time and date at job start Tue Mar 31 2020 19:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99316 * 2 1 3 5 5 C 1.53008 * 109.46689 * 185.00233 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46853 * 120.00096 * 15 13 11 18 18 H 1.48502 * 109.47406 * 239.99902 * 15 13 11 19 19 N 1.46500 * 109.47386 * 239.99538 * 2 1 3 20 20 C 1.34777 * 119.99764 * 85.00050 * 19 2 1 21 21 O 1.21281 * 120.00407 * 359.97438 * 20 19 2 22 22 C 1.50698 * 119.99566 * 179.97438 * 20 19 2 23 23 H 1.08997 * 109.47147 * 60.00392 * 22 20 19 24 24 C 1.52993 * 109.47617 * 299.99952 * 22 20 19 25 25 N 1.46506 * 109.47132 * 179.97438 * 22 20 19 26 26 C 1.34941 * 126.03321 * 84.71450 * 25 22 20 27 27 C 1.35322 * 107.74788 * 179.84286 * 26 25 22 28 28 C 1.39880 * 107.91427 * 0.42289 * 27 26 25 29 29 N 1.30834 * 108.20391 * 359.74004 * 28 27 26 30 30 H 1.08997 * 109.47436 * 300.00187 * 1 2 3 31 31 H 1.09004 * 109.47014 * 60.00824 * 1 2 3 32 32 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46807 * 65.00592 * 4 2 1 34 34 H 1.08995 * 109.47458 * 305.00209 * 4 2 1 35 35 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 36 36 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 37 37 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 38 38 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 39 39 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 40 40 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 41 41 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 42 42 H 0.96995 * 119.99694 * 265.00114 * 19 2 1 43 43 H 1.09003 * 109.47142 * 60.00121 * 24 22 20 44 44 H 1.08998 * 109.47590 * 179.97438 * 24 22 20 45 45 H 1.08997 * 109.47222 * 300.00394 * 24 22 20 46 46 H 1.07998 * 126.12980 * 0.02562 * 26 25 22 47 47 H 1.07996 * 126.04840 * 180.16168 * 27 26 25 48 48 H 1.07991 * 125.89473 * 179.71575 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3139 6 7 4.0544 -1.3060 2.5131 7 6 5.5181 -1.2234 2.6080 8 6 5.9825 -1.9442 3.8473 9 8 5.1739 -2.4749 4.5791 10 7 7.2965 -2.0000 4.1418 11 6 7.7190 -2.6553 5.2696 12 1 6.9989 -3.1264 5.9220 13 6 9.0737 -2.7124 5.5735 14 7 9.9498 -2.1378 4.7803 15 14 9.6492 -3.6046 7.1104 16 1 8.4748 -4.1612 7.8287 17 1 10.5643 -4.7098 6.7276 18 1 10.3664 -2.6526 7.9962 19 7 2.0184 -0.6907 -1.1961 20 6 2.1472 -0.0184 -2.3571 21 8 1.8583 1.1583 -2.4118 22 6 2.6501 -0.7288 -3.5873 23 1 1.9779 -1.5511 -3.8323 24 6 4.0528 -1.2787 -3.3211 25 7 2.6987 0.2123 -4.7091 26 6 3.7110 1.0586 -4.9919 27 6 3.3716 1.7506 -6.1042 28 6 2.1043 1.3189 -6.5095 29 7 1.7000 0.3969 -5.6739 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2616 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.6166 -0.9411 3.3456 38 1 5.9659 -1.6872 1.7291 39 1 5.8204 -0.1775 2.6608 40 1 7.9432 -1.5759 3.5563 41 1 10.8955 -2.1773 4.9926 42 1 2.2491 -1.6318 -1.1524 43 1 4.0162 -1.9790 -2.4867 44 1 4.4164 -1.7929 -4.2108 45 1 4.7250 -0.4564 -3.0761 46 1 4.6291 1.1627 -4.4327 47 1 3.9711 2.5059 -6.5904 48 1 1.5544 1.6841 -7.3642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699082699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:29 Heat of formation + Delta-G solvation = 4.076887 kcal Electronic energy + Delta-G solvation = -28368.725686 eV Core-core repulsion = 24267.430011 eV Total energy + Delta-G solvation = -4101.295674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59459 -40.11748 -38.37697 -37.10095 -35.09426 -35.01772 -33.87246 -31.93037 -31.25438 -30.31425 -29.72815 -29.22581 -26.31789 -25.41526 -24.17080 -22.72085 -21.99425 -21.30932 -21.01532 -20.24428 -19.28647 -18.07323 -17.87714 -17.53606 -16.59148 -16.15949 -15.68060 -15.55389 -15.09081 -14.73320 -14.55762 -14.39585 -14.32322 -13.90633 -13.81960 -13.78475 -13.72301 -13.17924 -13.16550 -13.00786 -12.83911 -12.72501 -12.34873 -12.31705 -12.12752 -11.72125 -11.55220 -11.35433 -11.32024 -11.10479 -11.00369 -10.94247 -10.39667 -10.37465 -10.26263 -9.62416 -9.56011 -9.47607 -8.82790 -8.52454 -8.13406 -8.00322 -6.45741 -3.86688 1.57329 2.02681 2.16216 2.65656 2.83491 3.13394 3.24290 3.31413 3.85902 3.95031 3.99285 4.16292 4.22886 4.32036 4.54813 4.69856 4.71686 4.75895 4.85219 4.93800 5.04384 5.05941 5.19110 5.24987 5.26680 5.28992 5.40490 5.43252 5.49012 5.56030 5.58619 5.72643 5.78763 5.81107 5.87225 5.92617 5.99234 6.15564 6.21703 6.39552 6.66971 7.06665 7.13221 7.45584 7.51687 7.57784 7.76994 8.02427 8.56817 9.13927 9.49971 10.01115 10.72008 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.001856 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.698610 B =15080.441810 C =16369.334815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.717 5.717 20 C 0.502 3.498 21 O -0.521 6.521 22 C 0.143 3.857 23 H 0.128 0.872 24 C -0.163 4.163 25 N -0.356 5.356 26 C 0.069 3.931 27 C -0.275 4.275 28 C 0.047 3.953 29 N -0.294 5.294 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.350 0.650 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.403 0.597 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 5.282 -20.225 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.371 5.371 20 C 0.286 3.714 21 O -0.395 6.395 22 C 0.036 3.964 23 H 0.145 0.855 24 C -0.221 4.221 25 N -0.138 5.138 26 C -0.076 4.076 27 C -0.304 4.304 28 C -0.139 4.139 29 N -0.114 5.114 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.238 0.762 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.187 0.813 47 H 0.165 0.835 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.446 4.273 -19.613 24.731 hybrid contribution 1.746 0.977 0.458 2.053 sum -12.700 5.250 -19.156 23.575 Atomic orbital electron populations 1.22162 0.94900 1.02394 1.02652 1.21014 0.94151 0.97495 0.83332 0.89355 1.21890 0.95688 1.02068 0.96755 1.21958 0.94441 0.96172 0.94468 1.60088 1.04985 1.59841 1.05271 1.21664 0.88859 0.98755 0.98901 1.19802 0.83422 0.86187 0.88052 1.90522 1.53391 1.50483 1.52354 1.41876 1.05427 1.48850 1.23871 1.19760 0.91999 1.30204 1.00943 0.87838 1.25274 0.95630 0.97806 0.99275 1.69617 1.02510 1.44260 1.37894 0.85794 0.78777 0.78851 0.80889 1.19200 1.20725 1.20753 1.46085 1.67337 1.14270 1.09386 1.20716 0.78343 0.87769 0.84610 1.90773 1.48725 1.15612 1.84431 1.21102 1.01081 0.91052 0.83139 0.85454 1.22187 0.92960 1.02531 1.04439 1.48179 1.13528 1.30839 1.21242 1.22437 0.94540 0.92756 0.97879 1.21481 0.99399 1.08294 1.01262 1.23870 0.95567 0.95515 0.98995 1.77342 1.11503 1.21297 1.01242 0.91322 0.92224 0.92173 0.90049 0.90027 0.95544 0.91267 0.83120 0.89720 0.93926 0.77476 0.91895 0.76184 0.88982 0.89937 0.90684 0.81257 0.83499 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.21 2.57 -67.93 -0.17 1.04 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 4 C -0.13 -1.07 5.01 -26.72 -0.13 -1.21 16 5 C 0.06 0.63 5.57 -3.82 -0.02 0.61 16 6 N -0.67 -9.94 6.12 -115.05 -0.70 -10.65 16 7 C 0.05 0.86 6.17 -4.97 -0.03 0.82 16 8 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 9 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 10 N -0.56 -14.03 5.29 -10.97 -0.06 -14.08 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 15 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.72 -5.30 4.42 -53.80 -0.24 -5.53 16 20 C 0.50 4.86 7.19 -10.99 -0.08 4.78 16 21 O -0.52 -7.39 16.07 5.56 0.09 -7.30 16 22 C 0.14 1.09 3.73 -69.08 -0.26 0.83 16 23 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 24 C -0.16 -0.79 8.74 37.15 0.32 -0.47 16 25 N -0.36 -3.66 3.02 -55.99 -0.17 -3.83 16 26 C 0.07 0.64 10.57 -17.22 -0.18 0.46 16 27 C -0.28 -2.48 10.81 -40.01 -0.43 -2.91 16 28 C 0.05 0.46 12.03 -17.36 -0.21 0.25 16 29 N -0.29 -3.50 12.58 30.62 0.39 -3.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.68 7.75 -51.93 -0.40 0.27 16 37 H 0.35 5.43 8.43 -39.29 -0.33 5.10 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.40 2.04 8.02 -40.82 -0.33 1.71 16 43 H 0.09 0.30 7.57 -51.93 -0.39 -0.09 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.39 7.16 -51.93 -0.37 0.02 16 46 H 0.17 1.13 7.27 -52.49 -0.38 0.75 16 47 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -36.08 406.75 -7.45 -43.53 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.51 Total: 12.63 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.17 Total: 5.38 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.06 Total: -60.68 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.18 Total: -22.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.08 -7.45 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.609 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds