Wall clock time and date at job start Tue Mar 31 2020 19:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99316 * 2 1 3 5 5 C 1.53008 * 109.46689 * 185.00233 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46853 * 120.00096 * 15 13 11 18 18 H 1.48502 * 109.47406 * 239.99902 * 15 13 11 19 19 N 1.46500 * 109.47386 * 239.99538 * 2 1 3 20 20 C 1.34777 * 119.99764 * 85.00050 * 19 2 1 21 21 O 1.21281 * 120.00407 * 359.97438 * 20 19 2 22 22 C 1.50698 * 119.99566 * 179.97438 * 20 19 2 23 23 H 1.08997 * 109.47147 * 60.00392 * 22 20 19 24 24 C 1.52993 * 109.47617 * 299.99952 * 22 20 19 25 25 N 1.46506 * 109.47132 * 179.97438 * 22 20 19 26 26 C 1.34941 * 126.03321 * 84.71450 * 25 22 20 27 27 C 1.35322 * 107.74788 * 179.84286 * 26 25 22 28 28 C 1.39880 * 107.91427 * 0.42289 * 27 26 25 29 29 N 1.30834 * 108.20391 * 359.74004 * 28 27 26 30 30 H 1.08997 * 109.47436 * 300.00187 * 1 2 3 31 31 H 1.09004 * 109.47014 * 60.00824 * 1 2 3 32 32 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46807 * 65.00592 * 4 2 1 34 34 H 1.08995 * 109.47458 * 305.00209 * 4 2 1 35 35 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 36 36 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 37 37 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 38 38 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 39 39 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 40 40 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 41 41 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 42 42 H 0.96995 * 119.99694 * 265.00114 * 19 2 1 43 43 H 1.09003 * 109.47142 * 60.00121 * 24 22 20 44 44 H 1.08998 * 109.47590 * 179.97438 * 24 22 20 45 45 H 1.08997 * 109.47222 * 300.00394 * 24 22 20 46 46 H 1.07998 * 126.12980 * 0.02562 * 26 25 22 47 47 H 1.07996 * 126.04840 * 180.16168 * 27 26 25 48 48 H 1.07991 * 125.89473 * 179.71575 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3139 6 7 4.0544 -1.3060 2.5131 7 6 5.5181 -1.2234 2.6080 8 6 5.9825 -1.9442 3.8473 9 8 5.1739 -2.4749 4.5791 10 7 7.2965 -2.0000 4.1418 11 6 7.7190 -2.6553 5.2696 12 1 6.9989 -3.1264 5.9220 13 6 9.0737 -2.7124 5.5735 14 7 9.9498 -2.1378 4.7803 15 14 9.6492 -3.6046 7.1104 16 1 8.4748 -4.1612 7.8287 17 1 10.5643 -4.7098 6.7276 18 1 10.3664 -2.6526 7.9962 19 7 2.0184 -0.6907 -1.1961 20 6 2.1472 -0.0184 -2.3571 21 8 1.8583 1.1583 -2.4118 22 6 2.6501 -0.7288 -3.5873 23 1 1.9779 -1.5511 -3.8323 24 6 4.0528 -1.2787 -3.3211 25 7 2.6987 0.2123 -4.7091 26 6 3.7110 1.0586 -4.9919 27 6 3.3716 1.7506 -6.1042 28 6 2.1043 1.3189 -6.5095 29 7 1.7000 0.3969 -5.6739 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2616 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.6166 -0.9411 3.3456 38 1 5.9659 -1.6872 1.7291 39 1 5.8204 -0.1775 2.6608 40 1 7.9432 -1.5759 3.5563 41 1 10.8955 -2.1773 4.9926 42 1 2.2491 -1.6318 -1.1524 43 1 4.0162 -1.9790 -2.4867 44 1 4.4164 -1.7929 -4.2108 45 1 4.7250 -0.4564 -3.0761 46 1 4.6291 1.1627 -4.4327 47 1 3.9711 2.5059 -6.5904 48 1 1.5544 1.6841 -7.3642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699082699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:28 Heat of formation + Delta-G solvation = -23.835157 kcal Electronic energy + Delta-G solvation = -28369.936043 eV Core-core repulsion = 24267.430011 eV Total energy + Delta-G solvation = -4102.506031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27422 -40.86992 -40.14168 -38.02986 -36.31570 -35.71876 -35.64494 -33.28278 -32.69048 -31.01576 -30.51751 -30.01016 -27.79541 -26.09480 -25.67410 -23.59666 -22.81605 -21.98506 -21.76210 -21.09660 -20.87188 -19.90530 -18.71185 -18.21167 -17.82801 -17.29541 -16.93726 -16.47887 -16.27812 -16.02139 -15.70777 -15.44117 -15.36708 -15.05516 -14.88509 -14.79871 -14.45905 -14.31602 -13.87544 -13.75796 -13.65051 -13.50375 -13.41244 -13.30643 -13.22773 -12.95524 -12.81402 -12.63046 -12.40991 -12.22432 -12.13049 -12.10761 -11.79845 -11.65859 -11.51033 -11.17943 -10.35612 -10.35024 -10.19963 -10.01247 -9.51628 -9.33622 -8.46823 -5.95401 0.88122 1.36957 1.40049 1.42683 1.45842 1.56559 1.97464 2.05589 2.17807 2.29245 2.89033 3.20671 3.41324 3.49076 3.61854 3.80468 3.92790 3.97873 4.02127 4.09473 4.14263 4.33257 4.42849 4.47520 4.53982 4.56227 4.61137 4.61954 4.69165 4.71692 4.78638 4.87219 4.88530 5.04393 5.08941 5.15856 5.18766 5.28005 5.41615 5.46259 5.74303 5.89109 6.04629 6.10499 6.39242 6.44474 6.60149 6.75632 7.09946 7.12967 7.56714 8.11805 8.70699 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.001856 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.698610 B =15080.441810 C =16369.334815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.062 3.938 6 N -0.680 5.680 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.703 5.703 20 C 0.503 3.497 21 O -0.571 6.571 22 C 0.141 3.859 23 H 0.140 0.860 24 C -0.157 4.157 25 N -0.364 5.364 26 C 0.060 3.940 27 C -0.286 4.286 28 C 0.039 3.961 29 N -0.336 5.336 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.344 0.656 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.417 0.583 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.192 0.808 47 H 0.167 0.833 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 4.789 -20.708 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.067 4.067 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.357 5.357 20 C 0.288 3.712 21 O -0.450 6.450 22 C 0.035 3.965 23 H 0.157 0.843 24 C -0.215 4.215 25 N -0.147 5.147 26 C -0.086 4.086 27 C -0.315 4.315 28 C -0.147 4.147 29 N -0.157 5.157 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.208 0.792 47 H 0.185 0.815 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.808 3.757 -20.117 24.688 hybrid contribution 1.497 1.157 0.587 1.981 sum -12.311 4.913 -19.531 23.604 Atomic orbital electron populations 1.22110 0.94529 1.02956 1.02021 1.20871 0.94329 0.96635 0.83542 0.91195 1.21773 0.94210 1.02444 0.96770 1.22042 0.95656 0.95922 0.93085 1.60114 1.03682 1.60999 1.06398 1.21532 0.90275 0.98909 0.96037 1.20910 0.82379 0.85049 0.89188 1.90491 1.54229 1.52004 1.54212 1.41948 1.06391 1.49213 1.23561 1.19704 0.92327 1.31979 1.02259 0.90295 1.26034 0.95221 0.98115 1.01949 1.69671 1.02920 1.44529 1.38987 0.84875 0.78052 0.78018 0.77424 1.19781 1.19614 1.19705 1.45981 1.66289 1.14820 1.08569 1.21096 0.77447 0.87174 0.85465 1.90751 1.51104 1.17861 1.85253 1.21338 1.03003 0.90607 0.81551 0.84263 1.22217 0.90940 1.02736 1.05573 1.48413 1.13359 1.31414 1.21468 1.22926 0.95106 0.92427 0.98142 1.21847 0.99453 1.08740 1.01433 1.24387 0.96098 0.94915 0.99306 1.77261 1.13026 1.22827 1.02564 0.90521 0.94306 0.90968 0.89382 0.89766 0.95444 0.89829 0.83798 0.87498 0.92051 0.76973 0.91313 0.74481 0.86961 0.89189 0.90854 0.79154 0.81532 0.77765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.15 2.33 2.57 44.99 0.12 2.44 16 3 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 4 C -0.11 -1.70 5.01 30.60 0.15 -1.54 16 5 C 0.06 1.16 5.57 86.31 0.48 1.64 16 6 N -0.68 -18.87 6.12 -517.91 -3.17 -22.04 16 7 C 0.06 2.05 6.17 85.56 0.53 2.58 16 8 C 0.44 20.01 7.82 87.66 0.69 20.70 16 9 O -0.62 -33.48 15.78 -3.05 -0.05 -33.52 16 10 N -0.57 -28.66 5.29 -307.00 -1.62 -30.28 16 11 C -0.33 -18.59 9.68 84.04 0.81 -17.77 16 12 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 15 Si 0.99 42.19 29.55 68.60 2.03 44.22 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 N -0.70 -9.17 4.42 -442.53 -1.96 -11.12 16 20 C 0.50 9.31 7.19 87.66 0.63 9.94 16 21 O -0.57 -16.35 16.07 -3.03 -0.05 -16.40 16 22 C 0.14 1.98 3.73 44.24 0.16 2.14 16 23 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.16 -1.16 8.74 71.98 0.63 -0.53 16 25 N -0.36 -7.28 3.02 -331.07 -1.00 -8.28 16 26 C 0.06 1.05 10.57 83.54 0.88 1.94 16 27 C -0.29 -4.92 10.81 21.99 0.24 -4.68 16 28 C 0.04 0.74 12.03 85.24 1.03 1.77 16 29 N -0.34 -8.01 12.58 -57.02 -0.72 -8.72 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 1.34 7.75 -2.38 -0.02 1.33 16 37 H 0.34 10.26 8.43 -89.70 -0.76 9.51 16 38 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 41 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.42 3.08 8.02 -92.71 -0.74 2.34 16 43 H 0.11 0.37 7.57 -2.39 -0.02 0.35 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.60 7.16 -2.39 -0.02 0.58 16 46 H 0.19 2.28 7.27 -2.91 -0.02 2.26 16 47 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 48 H 0.21 2.50 8.06 -2.92 -0.02 2.48 16 Total: -1.00 -79.46 406.75 0.00 -79.45 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -1.24 Total: 38.49 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.50 Total: 16.67 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -8.19 Total: -128.91 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.10 Total: -49.92 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -79.46 0.00 -79.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.617 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds