Wall clock time and date at job start Tue Mar 31 2020 19:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 N 1.46899 * 109.46993 * 180.02562 * 5 4 2 7 7 C 1.46906 * 111.00033 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47241 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99319 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99732 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47454 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46852 * 120.00224 * 15 13 11 18 18 H 1.48503 * 109.47033 * 239.99653 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21277 * 120.00549 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99847 * 180.02562 * 20 19 2 23 23 H 1.08988 * 109.47257 * 300.00034 * 22 20 19 24 24 C 1.53000 * 109.47215 * 60.00326 * 22 20 19 25 25 N 1.46507 * 109.47145 * 179.97438 * 22 20 19 26 26 C 1.34954 * 126.03719 * 274.71710 * 25 22 20 27 27 C 1.35317 * 107.74279 * 179.83803 * 26 25 22 28 28 C 1.39871 * 107.91881 * 0.42215 * 27 26 25 29 29 N 1.30838 * 108.20563 * 359.73805 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46966 * 300.00238 * 5 4 2 36 36 H 1.08998 * 109.46717 * 60.00358 * 5 4 2 37 37 H 1.00902 * 111.00200 * 303.95826 * 6 5 4 38 38 H 1.08998 * 109.46716 * 300.00033 * 7 6 5 39 39 H 1.09002 * 109.46367 * 60.00145 * 7 6 5 40 40 H 0.96990 * 120.00200 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00330 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 43 43 H 1.09004 * 109.47341 * 59.99347 * 24 22 20 44 44 H 1.09000 * 109.47137 * 180.02562 * 24 22 20 45 45 H 1.09002 * 109.46918 * 299.99635 * 24 22 20 46 46 H 1.08000 * 126.12394 * 359.97438 * 26 25 22 47 47 H 1.08000 * 126.03589 * 180.16202 * 27 26 25 48 48 H 1.07997 * 125.89777 * 179.71442 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 7 4.0545 -1.3050 -2.5135 7 6 5.5182 -1.2224 -2.6084 8 6 5.9825 -1.9411 -3.8490 9 8 5.1738 -2.4705 -4.5817 10 7 7.2965 -1.9964 -4.1436 11 6 7.7188 -2.6498 -5.2725 12 1 6.9986 -3.1205 -5.9254 13 6 9.0736 -2.7074 -5.5761 14 7 9.9499 -2.1351 -4.7815 15 14 9.6490 -3.5983 -7.1138 16 1 8.4744 -4.1523 -7.8338 17 1 10.3670 -2.6456 -7.9983 18 1 10.5633 -4.7045 -6.7321 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8590 1.1585 2.4116 22 6 2.6499 -0.7287 3.5874 23 1 1.9778 -1.5510 3.8324 24 6 4.0527 -1.2785 3.3213 25 7 2.6996 0.2127 4.7088 26 6 3.7172 1.0509 4.9974 27 6 3.3737 1.7514 6.1030 28 6 2.1068 1.3199 6.5094 29 7 1.7017 0.3976 5.6744 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 3.8532 0.4372 -1.3573 36 1 3.9995 -1.0727 -0.4260 37 1 3.7451 -2.2653 -2.5287 38 1 5.8204 -0.1764 -2.6603 39 1 5.9659 -1.6869 -1.7298 40 1 7.9432 -1.5740 -3.5571 41 1 10.8955 -2.1749 -4.9936 42 1 2.2491 -1.6318 1.1525 43 1 4.7248 -0.4562 3.0762 44 1 4.4162 -1.7927 4.2110 45 1 4.0161 -1.9789 2.4869 46 1 4.6395 1.1469 4.4436 47 1 3.9737 2.5068 6.5884 48 1 1.5579 1.6847 7.3649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699082700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:31 Heat of formation + Delta-G solvation = 4.443235 kcal Electronic energy + Delta-G solvation = -28374.695408 eV Core-core repulsion = 24273.415619 eV Total energy + Delta-G solvation = -4101.279788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61027 -40.13540 -38.37818 -37.11111 -35.09615 -35.04262 -33.87213 -31.94412 -31.25541 -30.32770 -29.74443 -29.23075 -26.31733 -25.44415 -24.17220 -22.74035 -21.98030 -21.32221 -21.05098 -20.25335 -19.28579 -18.07871 -17.89178 -17.55728 -16.54759 -16.24906 -15.68438 -15.50557 -15.09582 -14.74404 -14.63126 -14.41089 -14.34615 -13.92783 -13.83549 -13.80683 -13.67471 -13.21693 -13.14250 -13.02169 -12.85301 -12.72089 -12.33006 -12.30669 -12.14824 -11.75500 -11.56479 -11.39781 -11.22755 -11.11549 -11.03050 -10.95641 -10.40979 -10.37444 -10.26205 -9.63776 -9.55990 -9.50321 -8.84153 -8.51832 -8.12807 -8.00273 -6.45738 -3.86651 1.55958 2.00530 2.14504 2.64498 2.81548 3.13389 3.24307 3.31433 3.85826 3.93506 3.98063 4.14128 4.22297 4.29167 4.52705 4.67949 4.69056 4.72460 4.88807 4.91035 5.01616 5.10345 5.16716 5.22500 5.26537 5.27209 5.37248 5.43110 5.44602 5.54370 5.65401 5.69839 5.77611 5.81996 5.87760 5.93208 5.98818 6.16176 6.21757 6.38230 6.65321 7.03835 7.13434 7.44163 7.51693 7.58487 7.75089 8.02427 8.56844 9.13937 9.49979 10.01143 10.72024 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.001856 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.651262 B =15080.091109 C =16365.804118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.718 5.718 20 C 0.502 3.498 21 O -0.519 6.519 22 C 0.143 3.857 23 H 0.127 0.873 24 C -0.162 4.162 25 N -0.356 5.356 26 C 0.069 3.931 27 C -0.274 4.274 28 C 0.047 3.953 29 N -0.294 5.294 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.348 0.652 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.401 0.599 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.170 0.830 47 H 0.148 0.852 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 3.805 21.194 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.301 5.301 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.372 5.372 20 C 0.286 3.714 21 O -0.393 6.393 22 C 0.036 3.964 23 H 0.145 0.855 24 C -0.221 4.221 25 N -0.138 5.138 26 C -0.077 4.077 27 C -0.304 4.304 28 C -0.139 4.139 29 N -0.114 5.114 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.167 0.833 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.235 0.765 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.188 0.812 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.409 3.961 19.867 24.860 hybrid contribution 1.897 -0.561 0.482 2.036 sum -12.512 3.400 20.349 24.129 Atomic orbital electron populations 1.22159 0.94878 1.02306 1.02741 1.21035 0.94170 0.97689 0.83140 0.89120 1.21893 0.95895 1.01320 0.97233 1.21963 0.94212 0.99837 0.90943 1.60055 1.09848 1.21721 1.38522 1.21665 0.88314 1.01301 0.96858 1.19806 0.83347 0.85960 0.88362 1.90524 1.53315 1.50587 1.52327 1.41873 1.05407 1.48958 1.23777 1.19763 0.91983 1.30234 1.00931 0.87837 1.25276 0.95632 0.97817 0.99263 1.69615 1.02502 1.44315 1.37847 0.85793 0.78765 0.78829 0.80919 1.19199 1.20715 1.20763 1.46097 1.67438 1.14129 1.09499 1.20703 0.78369 0.87790 0.84585 1.90776 1.48620 1.15552 1.84396 1.21093 1.01002 0.91054 0.83214 0.85506 1.22183 0.93054 1.02506 1.04339 1.48162 1.13308 1.31163 1.21186 1.22443 0.94411 0.92865 0.97941 1.21481 0.99304 1.08083 1.01491 1.23873 0.95617 0.95440 0.99001 1.77342 1.11663 1.21282 1.01099 0.92303 0.92231 0.91183 0.91199 0.88919 0.91091 0.95725 0.83251 0.89655 0.94001 0.77476 0.91894 0.76451 0.90640 0.89934 0.89174 0.81247 0.83475 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -1.07 5.01 -26.73 -0.13 -1.20 16 5 C 0.06 0.64 5.57 -3.82 -0.02 0.62 16 6 N -0.67 -9.94 6.13 -115.05 -0.70 -10.65 16 7 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 8 C 0.44 10.14 7.82 -10.99 -0.09 10.05 16 9 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 10 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 15 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 N -0.72 -5.17 4.42 -53.81 -0.24 -5.41 16 20 C 0.50 4.81 7.19 -10.99 -0.08 4.73 16 21 O -0.52 -7.35 16.08 5.56 0.09 -7.26 16 22 C 0.14 1.07 3.73 -69.08 -0.26 0.82 16 23 H 0.13 0.77 8.14 -51.94 -0.42 0.35 16 24 C -0.16 -0.76 8.72 37.16 0.32 -0.44 16 25 N -0.36 -3.63 3.02 -55.99 -0.17 -3.80 16 26 C 0.07 0.63 10.58 -17.22 -0.18 0.45 16 27 C -0.27 -2.45 10.80 -40.01 -0.43 -2.89 16 28 C 0.05 0.46 12.03 -17.36 -0.21 0.25 16 29 N -0.29 -3.47 12.58 30.62 0.39 -3.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.23 7.75 -51.93 -0.40 -0.17 16 37 H 0.35 5.24 8.43 -39.29 -0.33 4.91 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.40 1.87 8.02 -40.82 -0.33 1.54 16 43 H 0.07 0.38 7.15 -51.93 -0.37 0.01 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.17 1.12 7.25 -52.49 -0.38 0.73 16 47 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -36.20 406.73 -7.45 -43.66 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.51 Total: 12.32 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.17 Total: 5.36 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.06 Total: -60.50 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.18 Total: -22.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.20 -7.45 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.102 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds