Wall clock time and date at job start Tue Mar 31 2020 19:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 N 1.46899 * 109.46993 * 180.02562 * 5 4 2 7 7 C 1.46906 * 111.00033 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47241 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99319 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.38959 * 119.99732 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99844 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47454 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46852 * 120.00224 * 15 13 11 18 18 H 1.48503 * 109.47033 * 239.99653 * 15 13 11 19 19 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 20 20 C 1.34773 * 119.99909 * 275.00159 * 19 2 1 21 21 O 1.21277 * 120.00549 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99847 * 180.02562 * 20 19 2 23 23 H 1.08988 * 109.47257 * 300.00034 * 22 20 19 24 24 C 1.53000 * 109.47215 * 60.00326 * 22 20 19 25 25 N 1.46507 * 109.47145 * 179.97438 * 22 20 19 26 26 C 1.34954 * 126.03719 * 274.71710 * 25 22 20 27 27 C 1.35317 * 107.74279 * 179.83803 * 26 25 22 28 28 C 1.39871 * 107.91881 * 0.42215 * 27 26 25 29 29 N 1.30838 * 108.20563 * 359.73805 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09000 * 109.46966 * 300.00238 * 5 4 2 36 36 H 1.08998 * 109.46717 * 60.00358 * 5 4 2 37 37 H 1.00902 * 111.00200 * 303.95826 * 6 5 4 38 38 H 1.08998 * 109.46716 * 300.00033 * 7 6 5 39 39 H 1.09002 * 109.46367 * 60.00145 * 7 6 5 40 40 H 0.96990 * 120.00200 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00330 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99825 * 95.00368 * 19 2 1 43 43 H 1.09004 * 109.47341 * 59.99347 * 24 22 20 44 44 H 1.09000 * 109.47137 * 180.02562 * 24 22 20 45 45 H 1.09002 * 109.46918 * 299.99635 * 24 22 20 46 46 H 1.08000 * 126.12394 * 359.97438 * 26 25 22 47 47 H 1.08000 * 126.03589 * 180.16202 * 27 26 25 48 48 H 1.07997 * 125.89777 * 179.71442 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 7 4.0545 -1.3050 -2.5135 7 6 5.5182 -1.2224 -2.6084 8 6 5.9825 -1.9411 -3.8490 9 8 5.1738 -2.4705 -4.5817 10 7 7.2965 -1.9964 -4.1436 11 6 7.7188 -2.6498 -5.2725 12 1 6.9986 -3.1205 -5.9254 13 6 9.0736 -2.7074 -5.5761 14 7 9.9499 -2.1351 -4.7815 15 14 9.6490 -3.5983 -7.1138 16 1 8.4744 -4.1523 -7.8338 17 1 10.3670 -2.6456 -7.9983 18 1 10.5633 -4.7045 -6.7321 19 7 2.0184 -0.6906 1.1961 20 6 2.1470 -0.0184 2.3571 21 8 1.8590 1.1585 2.4116 22 6 2.6499 -0.7287 3.5874 23 1 1.9778 -1.5510 3.8324 24 6 4.0527 -1.2785 3.3213 25 7 2.6996 0.2127 4.7088 26 6 3.7172 1.0509 4.9974 27 6 3.3737 1.7514 6.1030 28 6 2.1068 1.3199 6.5094 29 7 1.7017 0.3976 5.6744 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6055 -0.2616 -2.1370 35 1 3.8532 0.4372 -1.3573 36 1 3.9995 -1.0727 -0.4260 37 1 3.7451 -2.2653 -2.5287 38 1 5.8204 -0.1764 -2.6603 39 1 5.9659 -1.6869 -1.7298 40 1 7.9432 -1.5740 -3.5571 41 1 10.8955 -2.1749 -4.9936 42 1 2.2491 -1.6318 1.1525 43 1 4.7248 -0.4562 3.0762 44 1 4.4162 -1.7927 4.2110 45 1 4.0161 -1.9789 2.4869 46 1 4.6395 1.1469 4.4436 47 1 3.9737 2.5068 6.5884 48 1 1.5579 1.6847 7.3649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699082700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:30 Heat of formation + Delta-G solvation = -23.673954 kcal Electronic energy + Delta-G solvation = -28375.914661 eV Core-core repulsion = 24273.415619 eV Total energy + Delta-G solvation = -4102.499041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28114 -40.88023 -40.14022 -38.03789 -36.31546 -35.72174 -35.65431 -33.28234 -32.69837 -31.02096 -30.52037 -30.01694 -27.79484 -26.10332 -25.68279 -23.61200 -22.80117 -21.99026 -21.79863 -21.08064 -20.88284 -19.90478 -18.71715 -18.21841 -17.82799 -17.31265 -16.92218 -16.47439 -16.26954 -16.03237 -15.72026 -15.46999 -15.25368 -15.13483 -15.04497 -14.73542 -14.45553 -14.27548 -13.82285 -13.79143 -13.62671 -13.49808 -13.43486 -13.31160 -13.25316 -12.95207 -12.81675 -12.64215 -12.40847 -12.27377 -12.12784 -12.05673 -11.82107 -11.66469 -11.50992 -11.18551 -10.36727 -10.35892 -10.20292 -10.01207 -9.52211 -9.29526 -8.46801 -5.95349 0.87514 1.36945 1.39220 1.42691 1.44942 1.56568 1.96967 2.05629 2.16713 2.29283 2.89573 3.20748 3.40227 3.49798 3.60779 3.79000 3.88141 3.97235 4.00886 4.13491 4.19456 4.31582 4.41753 4.46528 4.53278 4.54288 4.60172 4.61160 4.68765 4.70597 4.76621 4.87312 4.92311 5.05462 5.07175 5.15330 5.18494 5.27658 5.41626 5.46510 5.73697 5.89651 6.03895 6.11197 6.42138 6.46716 6.60246 6.74961 7.09398 7.13011 7.56806 8.11905 8.70733 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.001856 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.651262 B =15080.091109 C =16365.804118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.070 0.930 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.685 5.685 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.270 1.270 19 N -0.703 5.703 20 C 0.503 3.497 21 O -0.571 6.571 22 C 0.141 3.859 23 H 0.140 0.860 24 C -0.156 4.156 25 N -0.364 5.364 26 C 0.059 3.941 27 C -0.286 4.286 28 C 0.039 3.961 29 N -0.336 5.336 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.347 0.653 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.417 0.583 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.192 0.808 47 H 0.167 0.833 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 3.069 21.781 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.066 4.066 6 N -0.317 5.317 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.510 6.510 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.198 1.198 18 H -0.195 1.195 19 N -0.357 5.357 20 C 0.288 3.712 21 O -0.449 6.449 22 C 0.035 3.965 23 H 0.158 0.842 24 C -0.214 4.214 25 N -0.147 5.147 26 C -0.086 4.086 27 C -0.314 4.314 28 C -0.147 4.147 29 N -0.157 5.157 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.166 0.834 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.209 0.791 47 H 0.185 0.815 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.756 3.202 20.473 24.873 hybrid contribution 1.641 -0.301 0.318 1.699 sum -12.115 2.901 20.791 24.238 Atomic orbital electron populations 1.22106 0.94536 1.02967 1.01990 1.20866 0.94322 0.96758 0.83436 0.91193 1.21765 0.94382 1.02207 0.96780 1.22009 0.95396 0.99081 0.90088 1.60026 1.08531 1.21999 1.41182 1.21513 0.89786 1.01104 0.94259 1.20922 0.82299 0.84782 0.89538 1.90492 1.54154 1.52098 1.54209 1.41946 1.06375 1.49323 1.23466 1.19707 0.92308 1.32005 1.02254 0.90296 1.26035 0.95224 0.98126 1.01937 1.69670 1.02912 1.44587 1.38939 0.84875 0.78052 0.78016 0.77427 1.19779 1.19780 1.19540 1.45968 1.66365 1.14743 1.08576 1.21100 0.77461 0.87192 0.85473 1.90755 1.51035 1.17864 1.85237 1.21336 1.02978 0.90596 0.81568 0.84237 1.22217 0.90967 1.02711 1.05548 1.48403 1.13128 1.31740 1.21417 1.22930 0.94993 0.92530 0.98176 1.21848 0.99369 1.08547 1.01685 1.24387 0.96142 0.94856 0.99320 1.77259 1.13183 1.22802 1.02418 0.90887 0.94306 0.90633 0.89554 0.89665 0.91722 0.93502 0.83385 0.88397 0.91188 0.76975 0.91313 0.74570 0.90891 0.89167 0.86997 0.79132 0.81535 0.77764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 71.98 0.68 -1.71 16 2 C 0.15 2.32 2.57 44.99 0.12 2.44 16 3 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 4 C -0.11 -1.68 5.01 30.59 0.15 -1.53 16 5 C 0.06 1.18 5.57 86.30 0.48 1.66 16 6 N -0.68 -19.00 6.13 -517.92 -3.17 -22.17 16 7 C 0.07 2.08 6.17 85.56 0.53 2.61 16 8 C 0.44 20.01 7.82 87.66 0.69 20.70 16 9 O -0.62 -33.49 15.78 -3.07 -0.05 -33.54 16 10 N -0.57 -28.66 5.29 -306.97 -1.62 -30.28 16 11 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 12 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -48.75 13.05 21.67 0.28 -48.47 16 15 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 N -0.70 -8.78 4.42 -442.54 -1.96 -10.73 16 20 C 0.50 9.15 7.19 87.66 0.63 9.78 16 21 O -0.57 -16.31 16.08 -3.02 -0.05 -16.36 16 22 C 0.14 1.92 3.73 44.24 0.17 2.09 16 23 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 24 C -0.16 -1.08 8.72 71.98 0.63 -0.45 16 25 N -0.36 -7.20 3.02 -331.05 -1.00 -8.20 16 26 C 0.06 1.03 10.58 83.54 0.88 1.92 16 27 C -0.29 -4.88 10.80 21.99 0.24 -4.65 16 28 C 0.04 0.74 12.03 85.24 1.02 1.76 16 29 N -0.34 -7.93 12.58 -57.02 -0.72 -8.65 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.69 7.75 -2.39 -0.02 0.68 16 37 H 0.35 9.79 8.43 -89.69 -0.76 9.03 16 38 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.40 18.74 7.90 -92.72 -0.73 18.00 16 41 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.42 2.59 8.02 -92.71 -0.74 1.85 16 43 H 0.07 0.57 7.15 -2.38 -0.02 0.55 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 0.27 7.57 -2.39 -0.02 0.25 16 46 H 0.19 2.24 7.25 -2.91 -0.02 2.22 16 47 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -80.15 406.73 0.00 -80.14 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -1.24 Total: 37.44 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 7.50 Total: 16.59 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -8.19 Total: -128.50 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.10 Total: -49.90 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -80.15 0.00 -80.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.470 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds