Wall clock time and date at job start Tue Mar 31 2020 20:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46492 * 109.47535 * 2 1 4 4 C 1.46513 * 119.99873 * 263.60847 * 3 2 1 5 5 C 1.52994 * 109.46795 * 269.99842 * 4 3 2 6 6 N 1.46909 * 109.46695 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99637 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46870 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99826 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99812 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99545 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00001 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99833 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00087 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47366 * 90.00247 * 15 13 11 17 17 H 1.48495 * 109.47243 * 210.00364 * 15 13 11 18 18 H 1.48504 * 109.47227 * 330.00171 * 15 13 11 19 19 C 1.34769 * 120.00254 * 83.60695 * 3 2 1 20 20 O 1.21609 * 120.00536 * 184.33189 * 19 3 2 21 21 C 1.47409 * 120.00233 * 4.33007 * 19 3 2 22 22 N 1.31621 * 125.85835 * 354.69885 * 21 19 3 23 23 C 1.33104 * 109.09076 * 180.16751 * 22 21 19 24 24 C 1.35560 * 108.35258 * 359.56090 * 23 22 21 25 25 N 1.35402 * 107.16141 * 0.26803 * 24 23 22 26 26 C 1.46497 * 126.44105 * 179.97438 * 25 24 23 27 27 C 1.53009 * 109.46918 * 265.01759 * 26 25 24 28 28 H 1.09000 * 109.47032 * 60.00080 * 1 2 3 29 29 H 1.09000 * 109.47710 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47213 * 300.00297 * 1 2 3 31 31 H 1.09001 * 109.47213 * 239.99703 * 2 1 3 32 32 H 1.09000 * 109.47032 * 119.99920 * 2 1 3 33 33 H 1.09000 * 109.46781 * 30.00121 * 4 3 2 34 34 H 1.08997 * 109.46402 * 149.99863 * 4 3 2 35 35 H 1.08998 * 109.47184 * 299.99640 * 5 4 3 36 36 H 1.08994 * 109.47711 * 60.00250 * 5 4 3 37 37 H 1.00896 * 110.99659 * 56.04730 * 6 5 4 38 38 H 1.09007 * 109.46908 * 299.99455 * 7 6 5 39 39 H 1.09001 * 109.47591 * 59.99852 * 7 6 5 40 40 H 0.96993 * 120.00098 * 359.97438 * 10 8 7 41 41 H 0.97001 * 119.99254 * 179.97438 * 14 13 11 42 42 H 1.08006 * 125.82079 * 179.82503 * 23 22 21 43 43 H 1.07993 * 126.42231 * 180.29561 * 24 23 22 44 44 H 1.08995 * 109.47283 * 25.01772 * 26 25 24 45 45 H 1.09007 * 109.47232 * 145.02449 * 26 25 24 46 46 H 1.09004 * 109.46690 * 59.99792 * 27 26 25 47 47 H 1.09000 * 109.46904 * 179.97438 * 27 26 25 48 48 H 1.08995 * 109.47155 * 300.00092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3958 2.0246 -1.2610 5 6 3.8786 1.7707 -1.5392 6 7 4.2571 2.4165 -2.8033 7 6 5.6775 2.1928 -3.1039 8 6 6.0282 2.8689 -4.4043 9 8 5.1784 3.4769 -5.0203 10 7 7.2859 2.7972 -4.8834 11 6 7.6051 3.4127 -6.0661 12 1 6.8485 3.9547 -6.6141 13 6 8.9018 3.3392 -6.5597 14 7 9.2076 3.9288 -7.6937 15 14 10.2105 2.4024 -5.6115 16 1 10.2260 0.9860 -6.0570 17 1 11.5392 3.0154 -5.8645 18 1 9.9068 2.4612 -4.1590 19 6 2.1205 2.0598 1.1598 20 8 2.4504 3.2302 1.1525 21 6 1.8324 1.3834 2.4375 22 7 1.3741 0.1571 2.5745 23 6 1.2322 -0.1123 3.8702 24 6 1.6225 0.9761 4.5778 25 7 2.0007 1.9196 3.6833 26 6 2.4967 3.2629 3.9926 27 6 1.3365 4.2591 3.9417 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7976 1.6113 -2.0730 34 1 2.2181 3.0976 -1.1885 35 1 4.4767 2.1841 -0.7271 36 1 4.0563 0.6978 -1.6115 37 1 4.0420 3.4021 -2.7843 38 1 6.2884 2.6085 -2.3024 39 1 5.8672 1.1227 -3.1876 40 1 7.9654 2.3108 -4.3910 41 1 10.1130 3.8778 -8.0381 42 1 0.8720 -1.0414 4.2869 43 1 1.6307 1.0725 5.6534 44 1 2.9359 3.2673 4.9901 45 1 3.2530 3.5483 3.2613 46 1 0.5802 3.9737 4.6730 47 1 1.7055 5.2585 4.1724 48 1 0.8973 4.2548 2.9442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699179948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:55 Heat of formation + Delta-G solvation = 13.418492 kcal Electronic energy + Delta-G solvation = -28950.190591 eV Core-core repulsion = 24849.299999 eV Total energy + Delta-G solvation = -4100.890592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72810 -39.85733 -38.44632 -36.82425 -35.63000 -34.97269 -33.87320 -31.70401 -31.45766 -30.65728 -30.21127 -28.86041 -26.30559 -24.67346 -23.97950 -23.69916 -22.78326 -22.05155 -21.38884 -19.47712 -19.22600 -18.31293 -17.69856 -16.89561 -16.50333 -16.23464 -16.02116 -15.59293 -15.10163 -14.97008 -14.81340 -14.51422 -14.26156 -14.12542 -13.90302 -13.89706 -13.60772 -13.34347 -13.14491 -13.05904 -12.70835 -12.51755 -12.40941 -12.31966 -12.04454 -11.86417 -11.77931 -11.62984 -11.36142 -11.19496 -11.04024 -10.57935 -10.47996 -10.21241 -10.03304 -9.95594 -9.55271 -9.08251 -8.83395 -8.55471 -8.18229 -8.13419 -6.29134 -3.80411 1.02152 2.01362 2.24953 2.81501 3.04243 3.07821 3.08567 3.16421 3.76391 3.84824 4.11729 4.19836 4.22959 4.30360 4.54168 4.79332 4.80947 4.86354 4.97554 4.98233 5.01886 5.07237 5.20766 5.23667 5.27994 5.28495 5.40552 5.47679 5.58558 5.62553 5.65106 5.71918 5.79427 5.84308 5.88002 5.92951 5.97982 6.07426 6.26161 6.36841 6.55820 7.03842 7.07186 7.39951 7.57133 7.60555 7.83522 8.16637 8.61964 8.97026 9.44557 9.84926 10.84020 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002015 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.112064 B =13893.048177 C =14276.277669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.092 3.908 3 N -0.585 5.585 4 C 0.118 3.882 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.451 3.549 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.602 3.398 20 O -0.538 6.538 21 C 0.144 3.856 22 N -0.438 5.438 23 C -0.033 4.033 24 C -0.030 4.030 25 N -0.413 5.413 26 C 0.096 3.904 27 C -0.163 4.163 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.352 0.648 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 -8.932 29.442 34.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.031 4.031 3 N -0.316 5.316 4 C -0.005 4.005 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.445 6.445 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.388 3.612 20 O -0.415 6.415 21 C -0.115 4.115 22 N -0.160 5.160 23 C -0.186 4.186 24 C -0.168 4.168 25 N -0.093 5.093 26 C -0.026 4.026 27 C -0.220 4.220 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.198 0.802 44 H 0.111 0.889 45 H 0.126 0.874 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.056 -8.676 27.763 33.225 hybrid contribution 1.813 0.248 2.106 2.790 sum -14.243 -8.427 29.869 34.148 Atomic orbital electron populations 1.22001 0.95591 1.02099 1.01564 1.22139 0.95044 0.81011 1.04856 1.47635 1.63167 1.15183 1.05662 1.21495 0.95414 0.99570 0.83990 1.22267 0.95316 1.00162 0.90664 1.59986 1.18174 1.19989 1.31724 1.21691 0.88895 1.01375 0.96337 1.19694 0.83155 0.85766 0.87743 1.90566 1.47879 1.45624 1.60473 1.42204 1.09056 1.49336 1.22476 1.19437 0.97198 1.29862 0.96783 0.86255 1.25042 0.97267 0.97654 0.96270 1.69627 1.20546 1.42924 1.19079 0.86664 0.82198 0.80663 0.79815 1.19590 1.20210 1.19549 1.16561 0.77721 0.85180 0.81749 1.90819 1.48857 1.15208 1.86620 1.22639 1.10148 0.91725 0.86937 1.70379 1.15418 1.10905 1.19273 1.22532 1.07081 0.99784 0.89156 1.22927 1.06394 0.90614 0.96884 1.45289 1.44869 1.13238 1.05903 1.22126 0.98613 0.78419 1.03396 1.22065 0.97648 0.98820 1.03499 0.93230 0.91623 0.92481 0.90616 0.86611 0.88772 0.89467 0.95250 0.90863 0.82800 0.93756 0.89429 0.79695 0.91640 0.80566 0.80191 0.88939 0.87366 0.92344 0.90234 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.75 37.16 0.36 -0.96 16 2 C 0.09 0.84 5.70 -4.05 -0.02 0.82 16 3 N -0.58 -6.43 2.49 -174.97 -0.44 -6.86 16 4 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 5 C 0.05 0.59 6.01 -3.82 -0.02 0.57 16 6 N -0.67 -10.67 6.13 -115.05 -0.70 -11.38 16 7 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 8 C 0.45 10.47 7.82 -10.98 -0.09 10.38 16 9 O -0.56 -15.40 15.78 5.55 0.09 -15.32 16 10 N -0.59 -14.36 5.09 -10.96 -0.06 -14.41 16 11 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 12 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 15 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 19 C 0.60 7.37 7.61 -12.53 -0.10 7.27 16 20 O -0.54 -7.60 13.83 5.27 0.07 -7.53 16 21 C 0.14 1.55 7.35 -154.51 -1.14 0.41 16 22 N -0.44 -4.26 6.51 -11.25 -0.07 -4.33 16 23 C -0.03 -0.24 11.85 -17.96 -0.21 -0.45 16 24 C -0.03 -0.19 11.53 -16.93 -0.20 -0.39 16 25 N -0.41 -3.52 2.76 -114.58 -0.32 -3.84 16 26 C 0.10 0.66 6.14 -4.04 -0.02 0.64 16 27 C -0.16 -1.08 10.17 37.16 0.38 -0.70 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 31 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 32 H 0.12 1.12 5.27 -51.93 -0.27 0.84 16 33 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.09 1.11 7.36 -51.93 -0.38 0.72 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 38 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 45 H 0.11 0.94 6.78 -51.93 -0.35 0.59 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.66 7.58 -51.93 -0.39 0.26 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -35.14 395.91 -8.13 -43.27 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.38 Total: 12.87 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -1.36 Total: 11.90 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.81 Total: -66.07 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.16 Total: -22.85 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.14 -8.13 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699179948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.692 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds