Wall clock time and date at job start Tue Mar 31 2020 20:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46492 * 109.47535 * 2 1 4 4 C 1.46513 * 119.99873 * 263.60847 * 3 2 1 5 5 C 1.52994 * 109.46795 * 269.99842 * 4 3 2 6 6 N 1.46909 * 109.46695 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99637 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46870 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99826 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99812 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99545 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00001 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99833 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00087 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47366 * 90.00247 * 15 13 11 17 17 H 1.48495 * 109.47243 * 210.00364 * 15 13 11 18 18 H 1.48504 * 109.47227 * 330.00171 * 15 13 11 19 19 C 1.34769 * 120.00254 * 83.60695 * 3 2 1 20 20 O 1.21609 * 120.00536 * 184.33189 * 19 3 2 21 21 C 1.47409 * 120.00233 * 4.33007 * 19 3 2 22 22 N 1.31621 * 125.85835 * 354.69885 * 21 19 3 23 23 C 1.33104 * 109.09076 * 180.16751 * 22 21 19 24 24 C 1.35560 * 108.35258 * 359.56090 * 23 22 21 25 25 N 1.35402 * 107.16141 * 0.26803 * 24 23 22 26 26 C 1.46497 * 126.44105 * 179.97438 * 25 24 23 27 27 C 1.53009 * 109.46918 * 265.01759 * 26 25 24 28 28 H 1.09000 * 109.47032 * 60.00080 * 1 2 3 29 29 H 1.09000 * 109.47710 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47213 * 300.00297 * 1 2 3 31 31 H 1.09001 * 109.47213 * 239.99703 * 2 1 3 32 32 H 1.09000 * 109.47032 * 119.99920 * 2 1 3 33 33 H 1.09000 * 109.46781 * 30.00121 * 4 3 2 34 34 H 1.08997 * 109.46402 * 149.99863 * 4 3 2 35 35 H 1.08998 * 109.47184 * 299.99640 * 5 4 3 36 36 H 1.08994 * 109.47711 * 60.00250 * 5 4 3 37 37 H 1.00896 * 110.99659 * 56.04730 * 6 5 4 38 38 H 1.09007 * 109.46908 * 299.99455 * 7 6 5 39 39 H 1.09001 * 109.47591 * 59.99852 * 7 6 5 40 40 H 0.96993 * 120.00098 * 359.97438 * 10 8 7 41 41 H 0.97001 * 119.99254 * 179.97438 * 14 13 11 42 42 H 1.08006 * 125.82079 * 179.82503 * 23 22 21 43 43 H 1.07993 * 126.42231 * 180.29561 * 24 23 22 44 44 H 1.08995 * 109.47283 * 25.01772 * 26 25 24 45 45 H 1.09007 * 109.47232 * 145.02449 * 26 25 24 46 46 H 1.09004 * 109.46690 * 59.99792 * 27 26 25 47 47 H 1.09000 * 109.46904 * 179.97438 * 27 26 25 48 48 H 1.08995 * 109.47155 * 300.00092 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3958 2.0246 -1.2610 5 6 3.8786 1.7707 -1.5392 6 7 4.2571 2.4165 -2.8033 7 6 5.6775 2.1928 -3.1039 8 6 6.0282 2.8689 -4.4043 9 8 5.1784 3.4769 -5.0203 10 7 7.2859 2.7972 -4.8834 11 6 7.6051 3.4127 -6.0661 12 1 6.8485 3.9547 -6.6141 13 6 8.9018 3.3392 -6.5597 14 7 9.2076 3.9288 -7.6937 15 14 10.2105 2.4024 -5.6115 16 1 10.2260 0.9860 -6.0570 17 1 11.5392 3.0154 -5.8645 18 1 9.9068 2.4612 -4.1590 19 6 2.1205 2.0598 1.1598 20 8 2.4504 3.2302 1.1525 21 6 1.8324 1.3834 2.4375 22 7 1.3741 0.1571 2.5745 23 6 1.2322 -0.1123 3.8702 24 6 1.6225 0.9761 4.5778 25 7 2.0007 1.9196 3.6833 26 6 2.4967 3.2629 3.9926 27 6 1.3365 4.2591 3.9417 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7976 1.6113 -2.0730 34 1 2.2181 3.0976 -1.1885 35 1 4.4767 2.1841 -0.7271 36 1 4.0563 0.6978 -1.6115 37 1 4.0420 3.4021 -2.7843 38 1 6.2884 2.6085 -2.3024 39 1 5.8672 1.1227 -3.1876 40 1 7.9654 2.3108 -4.3910 41 1 10.1130 3.8778 -8.0381 42 1 0.8720 -1.0414 4.2869 43 1 1.6307 1.0725 5.6534 44 1 2.9359 3.2673 4.9901 45 1 3.2530 3.5483 3.2613 46 1 0.5802 3.9737 4.6730 47 1 1.7055 5.2585 4.1724 48 1 0.8973 4.2548 2.9442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699179948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:54 Heat of formation + Delta-G solvation = -12.064357 kcal Electronic energy + Delta-G solvation = -28951.295610 eV Core-core repulsion = 24849.299999 eV Total energy + Delta-G solvation = -4101.995611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.33235 -40.74159 -40.28792 -37.77763 -36.73133 -35.94554 -35.64681 -33.76811 -32.41349 -31.28062 -30.88503 -29.89709 -27.79961 -25.81898 -25.04751 -24.46879 -23.81382 -22.75209 -22.10105 -21.31855 -20.37127 -19.97648 -18.41100 -17.89572 -17.73629 -17.17244 -17.06165 -16.89510 -16.66366 -15.84752 -15.73071 -15.47945 -15.42516 -15.10990 -14.89894 -14.82957 -14.72096 -14.60757 -14.28723 -14.18576 -13.86435 -13.65824 -13.54686 -13.40031 -13.03935 -12.99698 -12.77169 -12.70113 -12.42344 -12.37627 -12.10743 -12.01276 -11.98667 -11.52724 -11.32951 -10.84910 -10.69358 -10.48973 -10.26279 -9.86782 -9.46850 -9.43478 -8.42203 -6.03315 0.32741 1.29675 1.35075 1.36029 1.43937 1.64318 1.92783 2.07765 2.22298 2.33546 2.74228 3.13356 3.15122 3.44639 3.71294 3.78689 3.95382 4.02436 4.06339 4.12315 4.23669 4.30837 4.38996 4.41559 4.45934 4.49625 4.50796 4.56204 4.67784 4.71620 4.76491 4.78798 4.86399 4.95888 5.09587 5.14272 5.27000 5.43267 5.48641 5.52969 5.77376 5.84970 5.95079 5.97551 6.21029 6.25987 6.58012 6.74256 6.86272 7.03814 7.37605 7.93728 8.75382 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002015 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.112064 B =13893.048177 C =14276.277669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.093 3.907 3 N -0.584 5.584 4 C 0.123 3.877 5 C 0.058 3.942 6 N -0.679 5.679 7 C 0.063 3.937 8 C 0.449 3.551 9 O -0.613 6.613 10 N -0.590 5.590 11 C -0.329 4.329 12 H 0.056 0.944 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.233 1.233 19 C 0.595 3.405 20 O -0.570 6.570 21 C 0.105 3.895 22 N -0.444 5.444 23 C -0.048 4.048 24 C -0.011 4.011 25 N -0.415 5.415 26 C 0.094 3.906 27 C -0.156 4.156 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.345 0.655 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.204 0.796 43 H 0.222 0.778 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 -11.748 33.518 38.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 N -0.315 5.315 4 C 0.001 3.999 5 C -0.072 4.072 6 N -0.311 5.311 7 C -0.069 4.069 8 C 0.237 3.763 9 O -0.497 6.497 10 N -0.232 5.232 11 C -0.458 4.458 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.156 1.156 19 C 0.382 3.618 20 O -0.449 6.449 21 C -0.152 4.152 22 N -0.167 5.167 23 C -0.201 4.201 24 C -0.149 4.149 25 N -0.096 5.096 26 C -0.027 4.027 27 C -0.214 4.214 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.108 0.892 37 H 0.163 0.837 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.220 0.780 43 H 0.238 0.762 44 H 0.146 0.854 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.204 -11.518 31.850 37.125 hybrid contribution 1.391 1.156 0.867 2.006 sum -13.814 -10.361 32.717 36.994 Atomic orbital electron populations 1.21923 0.95223 1.02760 1.00540 1.22232 0.95272 0.79968 1.05364 1.47690 1.62928 1.15758 1.05110 1.21349 0.95065 0.98810 0.84724 1.22224 0.95625 1.00514 0.88816 1.60002 1.17627 1.19736 1.33753 1.21624 0.89949 1.02351 0.92983 1.20902 0.82062 0.84303 0.89066 1.90546 1.49273 1.47479 1.62430 1.42020 1.10167 1.49567 1.21417 1.19014 0.96734 1.31321 0.98778 0.92621 1.26135 0.99789 0.98294 0.97233 1.69809 1.21728 1.44521 1.21324 0.85350 0.77313 0.78922 0.79844 1.17984 1.19946 1.15639 1.16890 0.77231 0.84981 0.82669 1.90789 1.50404 1.16481 1.87199 1.22341 1.13155 0.92587 0.87096 1.70306 1.15007 1.10523 1.20849 1.23120 1.07276 1.01272 0.88437 1.23650 1.03620 0.89317 0.98346 1.45490 1.44512 1.13940 1.05649 1.22218 0.98087 0.77858 1.04488 1.22003 0.97877 0.99707 1.01778 0.93669 0.90057 0.93999 0.89354 0.86727 0.87990 0.91196 0.95737 0.89243 0.83712 0.91049 0.86354 0.77449 0.91102 0.77968 0.76163 0.85363 0.89737 0.91036 0.88987 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.75 71.98 0.70 -1.69 16 2 C 0.09 1.60 5.70 86.38 0.49 2.10 16 3 N -0.58 -12.75 2.49 -825.73 -2.05 -14.81 16 4 C 0.12 2.86 5.67 86.38 0.49 3.35 16 5 C 0.06 1.41 6.01 86.30 0.52 1.93 16 6 N -0.68 -21.16 6.13 -517.92 -3.17 -24.33 16 7 C 0.06 2.03 6.17 85.56 0.53 2.56 16 8 C 0.45 20.86 7.82 87.66 0.69 21.54 16 9 O -0.61 -34.83 15.78 -3.07 -0.05 -34.88 16 10 N -0.59 -28.45 5.09 -306.98 -1.56 -30.02 16 11 C -0.33 -19.62 10.16 84.04 0.85 -18.77 16 12 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 13 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 14 N -0.93 -56.86 13.96 21.66 0.30 -56.56 16 15 Si 0.97 39.27 27.74 68.60 1.90 41.18 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 19 C 0.59 14.87 7.61 86.66 0.66 15.53 16 20 O -0.57 -16.91 13.83 -4.06 -0.06 -16.96 16 21 C 0.10 2.20 7.35 136.28 1.00 3.20 16 22 N -0.44 -8.06 6.51 -189.52 -1.23 -9.29 16 23 C -0.05 -0.58 11.85 83.88 0.99 0.41 16 24 C -0.01 -0.10 11.53 83.52 0.96 0.86 16 25 N -0.42 -6.44 2.76 -516.43 -1.42 -7.86 16 26 C 0.09 1.18 6.14 86.38 0.53 1.71 16 27 C -0.16 -1.97 10.17 71.99 0.73 -1.24 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.82 7.12 -2.39 -0.02 0.80 16 31 H 0.09 1.29 8.02 -2.39 -0.02 1.27 16 32 H 0.12 2.07 5.27 -2.39 -0.01 2.06 16 33 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.07 1.87 7.36 -2.39 -0.02 1.85 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.34 11.71 8.43 -89.70 -0.76 10.95 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.39 15.55 5.76 -92.71 -0.53 15.02 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.22 0.12 8.06 -2.91 -0.02 0.09 16 44 H 0.13 0.65 8.13 -2.39 -0.02 0.63 16 45 H 0.08 1.49 6.78 -2.38 -0.02 1.48 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.04 0.72 7.58 -2.39 -0.02 0.70 16 Total: -1.00 -83.49 395.91 1.91 -81.58 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.36 Total: 40.88 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 9.62 Total: 31.08 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -9.14 Total: -142.87 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.10 Total: -51.84 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.18 kcal Total: -83.49 1.91 -81.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699179948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.519 kcal (2) G-P(sol) polarization free energy of solvation -83.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds