Wall clock time and date at job start Tue Mar 31 2020 20:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46655 * 2 1 4 4 C 1.34950 * 126.03376 * 124.97502 * 3 2 1 5 5 C 1.35319 * 107.74379 * 179.75106 * 4 3 2 6 6 C 1.39863 * 107.92095 * 0.39476 * 5 4 3 7 7 C 1.50707 * 125.90198 * 179.86455 * 6 5 4 8 8 C 1.50695 * 109.47011 * 124.71631 * 7 6 5 9 9 O 1.21274 * 120.00413 * 0.27295 * 8 7 6 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.47230 * 34.99566 * 11 10 8 13 13 C 1.53001 * 109.47277 * 275.00026 * 11 10 8 14 14 C 1.52990 * 109.47333 * 154.99849 * 11 10 8 15 15 N 1.46906 * 109.47473 * 305.00346 * 14 11 10 16 16 C 1.46896 * 111.00220 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.46825 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00429 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00020 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00087 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00235 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99726 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00402 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99728 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47243 * 90.00488 * 24 22 20 26 26 H 1.48502 * 109.46981 * 210.00344 * 24 22 20 27 27 H 1.48501 * 109.47148 * 329.99875 * 24 22 20 28 28 N 1.30843 * 108.20455 * 359.59989 * 6 5 4 29 29 H 1.08999 * 109.47405 * 59.99793 * 1 2 3 30 30 H 1.09002 * 109.46766 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46959 * 299.99499 * 1 2 3 32 32 H 1.08998 * 109.47482 * 240.00522 * 2 1 3 33 33 H 1.09001 * 109.47215 * 119.99702 * 2 1 3 34 34 H 1.08001 * 126.13169 * 0.02562 * 4 3 2 35 35 H 1.08006 * 126.04244 * 180.27770 * 5 4 3 36 36 H 1.09005 * 109.46877 * 4.71505 * 7 6 5 37 37 H 1.09002 * 109.46993 * 244.71851 * 7 6 5 38 38 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.47307 * 59.99945 * 13 11 10 40 40 H 1.09000 * 109.47576 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.46954 * 300.00156 * 13 11 10 42 42 H 1.08999 * 109.47135 * 65.00148 * 14 11 10 43 43 H 1.09000 * 109.47629 * 185.00235 * 14 11 10 44 44 H 1.00902 * 110.99780 * 56.03718 * 15 14 11 45 45 H 1.09004 * 109.47058 * 299.99591 * 16 15 14 46 46 H 1.08997 * 109.47016 * 60.00038 * 16 15 14 47 47 H 0.96998 * 119.99716 * 0.02562 * 19 17 16 48 48 H 0.97003 * 120.00174 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8726 1.9213 0.8942 5 6 3.0756 3.2123 0.5430 6 6 2.3124 3.4725 -0.5997 7 6 2.2358 4.7883 -1.3306 8 6 2.5934 4.5796 -2.7795 9 8 2.8772 3.4709 -3.1805 10 7 2.5929 5.6245 -3.6309 11 6 2.9411 5.4219 -5.0394 12 1 2.5765 4.4483 -5.3674 13 6 4.4614 5.4783 -5.2023 14 6 2.2963 6.5200 -5.8873 15 7 0.8485 6.5437 -5.6393 16 6 0.1946 7.5889 -6.4380 17 6 -1.2862 7.5822 -6.1580 18 8 -1.7511 6.7849 -5.3710 19 7 -2.0939 8.4623 -6.7822 20 6 -3.4411 8.4559 -6.5279 21 1 -3.8551 7.7460 -5.8272 22 6 -4.2738 9.3635 -7.1710 23 7 -3.7701 10.2277 -8.0233 24 14 -6.1092 9.3553 -6.8240 25 1 -6.4028 10.2684 -5.6903 26 1 -6.8432 9.8131 -8.0311 27 1 -6.5409 7.9780 -6.4750 28 7 1.6807 2.3747 -0.9282 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3183 1.4129 1.7364 35 1 3.7128 3.9177 1.0558 36 1 2.9347 5.4943 -0.8818 37 1 1.2230 5.1849 -1.2597 38 1 2.3629 6.5108 -3.3109 39 1 4.9208 4.6958 -4.5982 40 1 4.7205 5.3271 -6.2502 41 1 4.8260 6.4517 -4.8743 42 1 2.7264 7.4852 -5.6200 43 1 2.4808 6.3198 -6.9427 44 1 0.6518 6.6634 -4.6569 45 1 0.6103 8.5613 -6.1740 46 1 0.3646 7.3964 -7.4973 47 1 -1.7222 9.0996 -7.4118 48 1 -4.3514 10.8611 -8.4726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699362557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:18 Heat of formation + Delta-G solvation = -27.774976 kcal Electronic energy + Delta-G solvation = -28302.936673 eV Core-core repulsion = 24200.259798 eV Total energy + Delta-G solvation = -4102.676875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11990 -40.72599 -40.10051 -37.85237 -36.03183 -35.57592 -35.02968 -33.26949 -32.96105 -31.69299 -30.59263 -28.98525 -28.83249 -26.69915 -24.73850 -24.28604 -22.65902 -21.98365 -21.47601 -21.09501 -20.42162 -19.90293 -18.31797 -17.95208 -17.71429 -17.07440 -16.90438 -16.40583 -16.28958 -16.18147 -15.94466 -15.40520 -15.28271 -15.18161 -15.03852 -14.45440 -14.33728 -14.21917 -14.06911 -13.63956 -13.58180 -13.47422 -13.20071 -13.07972 -13.02264 -12.95866 -12.80743 -12.78594 -12.60333 -12.41863 -12.23985 -12.13170 -11.92421 -11.51050 -11.38237 -10.83628 -10.36513 -10.16760 -10.02569 -10.01400 -9.41685 -9.30149 -8.46956 -5.95455 1.06168 1.37390 1.41284 1.53990 1.69448 1.74206 1.81793 2.05541 2.28728 2.40167 2.90840 3.20398 3.50411 3.53185 3.85145 3.88342 3.98365 4.07305 4.15540 4.21998 4.28371 4.32449 4.33793 4.40569 4.51079 4.56787 4.60477 4.67311 4.69482 4.76675 4.78891 4.82267 4.89852 4.95421 5.09900 5.15604 5.23695 5.28811 5.40741 5.59406 5.75737 5.88046 6.10071 6.27282 6.39968 6.60409 6.61242 6.88833 7.12857 7.36130 7.56538 8.12507 8.70308 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.002173 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.226497 B =12881.823708 C =14751.709831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 N -0.382 5.382 4 C 0.053 3.947 5 C -0.282 4.282 6 C 0.061 3.939 7 C -0.058 4.058 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.715 5.715 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.149 4.149 14 C 0.058 3.942 15 N -0.690 5.690 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.276 1.276 28 N -0.319 5.319 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.214 0.786 35 H 0.172 0.828 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.411 0.589 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.344 0.656 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.704 -10.053 16.227 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.004 3.996 3 N -0.166 5.166 4 C -0.093 4.093 5 C -0.311 4.311 6 C -0.106 4.106 7 C -0.099 4.099 8 C 0.303 3.697 9 O -0.452 6.452 10 N -0.368 5.368 11 C 0.042 3.958 12 H 0.075 0.925 13 C -0.208 4.208 14 C -0.071 4.071 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.201 1.201 28 N -0.142 5.142 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.231 0.769 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.247 0.753 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.163 0.837 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.514 -12.438 15.055 26.909 hybrid contribution -0.334 1.732 0.606 1.865 sum 18.180 -10.706 15.660 26.275 Atomic orbital electron populations 1.22001 0.94202 1.03799 1.01791 1.21968 0.95883 0.76542 1.05243 1.49069 1.36056 1.10721 1.20704 1.23234 0.94639 0.94871 0.96558 1.21706 1.09915 0.98013 1.01430 1.22008 0.97593 0.94430 0.96563 1.20167 1.06324 0.93572 0.89856 1.20823 0.76056 0.84055 0.88806 1.90702 1.49543 1.25732 1.79263 1.45911 1.70305 1.11348 1.09252 1.20914 0.95454 0.99033 0.80361 0.92476 1.22037 0.93233 1.02597 1.02939 1.22342 0.85858 0.97715 1.01181 1.59972 1.10159 1.49525 1.12658 1.21546 0.89650 0.94989 1.00444 1.20973 0.90007 0.82782 0.83959 1.90509 1.77928 1.42480 1.40286 1.41923 1.07078 1.32083 1.39896 1.19633 0.83831 1.17843 1.25018 0.90589 1.26016 1.04590 0.95021 0.95597 1.69665 1.38067 1.20290 1.27941 0.84952 0.76919 0.78441 0.78171 1.19429 1.19479 1.20090 1.77378 1.25129 0.97929 1.13773 0.94492 0.88264 0.92363 0.90509 0.84616 0.76904 0.81095 0.83185 0.86637 0.75289 0.93848 0.90258 0.90357 0.91887 0.88602 0.83673 0.90696 0.87750 0.76864 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.10 71.98 0.73 -1.92 16 2 C 0.12 1.89 7.23 86.38 0.62 2.52 16 3 N -0.38 -8.74 3.68 -348.04 -1.28 -10.02 16 4 C 0.05 0.90 11.45 83.54 0.96 1.85 16 5 C -0.28 -5.47 10.72 21.99 0.24 -5.24 16 6 C 0.06 1.59 6.02 43.10 0.26 1.85 16 7 C -0.06 -1.21 6.28 29.10 0.18 -1.03 16 8 C 0.52 14.10 7.78 87.65 0.68 14.78 16 9 O -0.57 -21.43 15.22 -3.01 -0.05 -21.48 16 10 N -0.72 -15.62 4.35 -442.54 -1.93 -17.54 16 11 C 0.15 3.40 2.88 44.99 0.13 3.53 16 12 H 0.06 1.79 7.57 -2.38 -0.02 1.77 16 13 C -0.15 -2.68 9.48 71.98 0.68 -2.00 16 14 C 0.06 1.24 5.30 86.30 0.46 1.70 16 15 N -0.69 -21.48 6.12 -517.95 -3.17 -24.65 16 16 C 0.07 2.19 6.17 85.56 0.53 2.71 16 17 C 0.44 20.81 7.82 87.66 0.69 21.50 16 18 O -0.63 -35.46 15.78 -3.08 -0.05 -35.51 16 19 N -0.57 -29.43 5.29 -306.98 -1.62 -31.06 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 24 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 N -0.32 -10.08 11.76 -47.38 -0.56 -10.63 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.14 0.86 8.07 -2.39 -0.02 0.84 16 34 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.15 1.76 8.12 -2.38 -0.02 1.74 16 37 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.41 6.57 8.16 -92.71 -0.76 5.81 16 39 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.34 11.07 7.28 -89.69 -0.65 10.42 16 45 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -87.49 408.91 -0.06 -87.54 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -1.15 Total: 45.50 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 7.43 Total: 21.73 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -8.27 Total: -143.15 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.09 Total: -56.98 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -87.49 -0.06 -87.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699362557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.768 kcal (2) G-P(sol) polarization free energy of solvation -87.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds