Wall clock time and date at job start Tue Mar 31 2020 20:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.35033 * 124.88349 * 84.71683 * 4 2 1 6 6 C 1.35365 * 107.22814 * 179.89518 * 5 4 2 7 7 C 1.41506 * 105.50368 * 0.35005 * 6 5 4 8 8 C 1.47705 * 126.52096 * 179.79725 * 7 6 5 9 9 O 1.21572 * 120.00102 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00159 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47035 * 34.99630 * 11 10 8 13 13 C 1.52998 * 109.46798 * 274.99891 * 11 10 8 14 14 C 1.53001 * 109.47204 * 155.00091 * 11 10 8 15 15 N 1.46899 * 109.46927 * 304.99831 * 14 11 10 16 16 C 1.46905 * 111.00192 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47271 * 179.97438 * 16 15 14 18 18 O 1.21289 * 120.00082 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00062 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00251 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99932 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00241 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99994 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47411 * 120.00015 * 24 22 20 27 27 H 1.48500 * 109.47378 * 240.00047 * 24 22 20 28 28 N 1.28468 * 124.88231 * 265.01891 * 4 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08004 * 126.38762 * 0.02562 * 5 4 2 37 37 H 1.08001 * 127.24898 * 180.09609 * 6 5 4 38 38 H 0.97000 * 120.00215 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47115 * 299.99691 * 13 11 10 40 40 H 1.08998 * 109.47691 * 60.00106 * 13 11 10 41 41 H 1.09006 * 109.47037 * 179.97438 * 13 11 10 42 42 H 1.09000 * 109.47132 * 64.99823 * 14 11 10 43 43 H 1.08996 * 109.46851 * 185.00106 * 14 11 10 44 44 H 1.00898 * 111.00059 * 56.04890 * 15 14 11 45 45 H 1.08994 * 109.47022 * 300.00269 * 16 15 14 46 46 H 1.09002 * 109.46455 * 59.99880 * 16 15 14 47 47 H 0.97000 * 119.99454 * 359.97438 * 19 17 16 48 48 H 0.96993 * 119.99987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1796 -0.1163 -2.4077 6 6 2.6474 -1.0715 -3.2450 7 6 2.7459 -2.2459 -2.4618 8 6 3.2060 -3.5724 -2.9205 9 8 3.5473 -3.7311 -4.0765 10 7 3.2473 -4.6068 -2.0576 11 6 3.7042 -5.9224 -2.5125 12 1 4.4927 -5.7967 -3.2545 13 6 2.5319 -6.6812 -3.1377 14 6 4.2466 -6.7141 -1.3209 15 7 5.2919 -5.9314 -0.6481 16 6 5.8369 -6.6616 0.5043 17 6 6.9043 -5.8296 1.1670 18 8 7.1834 -4.7357 0.7234 19 7 7.5490 -6.3009 2.2528 20 6 8.5197 -5.5438 2.8560 21 1 8.7682 -4.5698 2.4611 22 6 9.1839 -6.0295 3.9757 23 7 8.8812 -7.2145 4.4567 24 14 10.5070 -4.9983 4.7973 25 1 10.6571 -3.7133 4.0682 26 1 10.1197 -4.7259 6.2047 27 1 11.7959 -5.7354 4.7724 28 7 2.3495 -1.9309 -1.2448 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.9755 0.9136 -2.6608 37 1 2.8900 -0.9616 -4.2917 38 1 2.9746 -4.4804 -1.1354 39 1 1.7433 -6.8070 -2.3958 40 1 2.1454 -6.1173 -3.9867 41 1 2.8718 -7.6599 -3.4766 42 1 3.4366 -6.9165 -0.6201 43 1 4.6674 -7.6563 -1.6719 44 1 4.9435 -5.0262 -0.3703 45 1 5.0378 -6.8632 1.2175 46 1 6.2685 -7.6037 0.1662 47 1 7.3255 -7.1755 2.6077 48 1 9.3446 -7.5534 5.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699395306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:16 Heat of formation + Delta-G solvation = 2.875396 kcal Electronic energy + Delta-G solvation = -28752.602458 eV Core-core repulsion = 24651.254683 eV Total energy + Delta-G solvation = -4101.347775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.82964 -39.59414 -38.25337 -36.66286 -36.09724 -34.20740 -33.58300 -31.54521 -31.16729 -31.06999 -29.93536 -27.85697 -27.54755 -25.08754 -24.52129 -23.23801 -22.79551 -20.94932 -20.59881 -19.99858 -19.21863 -18.06874 -17.82611 -17.02429 -16.32859 -16.15619 -15.94766 -15.29884 -15.06793 -14.75388 -14.50913 -14.27958 -14.21017 -13.94396 -13.82989 -13.50691 -13.35209 -13.33879 -13.00563 -12.83375 -12.70847 -12.56199 -12.36737 -11.92067 -11.87559 -11.69776 -11.64638 -11.57687 -11.43808 -11.07523 -11.03197 -10.89440 -10.33228 -10.20777 -10.05913 -9.50156 -9.39832 -9.21638 -9.00943 -8.42797 -8.03396 -7.93590 -6.40101 -3.80626 1.53805 2.03543 2.19487 3.17227 3.18036 3.27593 3.35229 3.48560 3.93470 3.96905 4.09570 4.30365 4.32313 4.51970 4.52955 4.55481 4.87415 4.93531 4.99521 5.07256 5.12564 5.22180 5.24630 5.26384 5.28692 5.33032 5.45974 5.50557 5.57857 5.59367 5.63143 5.65784 5.70233 5.81686 5.98722 6.02883 6.14656 6.27099 6.29575 6.52422 6.61885 7.21537 7.46865 7.57157 7.66650 7.83413 8.08684 8.27465 8.63737 9.20129 9.56611 10.08548 10.77869 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002662 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.779725 B =10515.122217 C =12747.622796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 C -0.165 4.165 4 N -0.275 5.275 5 C -0.020 4.020 6 C -0.179 4.179 7 C -0.017 4.017 8 C 0.611 3.389 9 O -0.534 6.534 10 N -0.710 5.710 11 C 0.144 3.856 12 H 0.100 0.900 13 C -0.161 4.161 14 C 0.051 3.949 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 N -0.258 5.258 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.403 0.597 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 10.372 -9.481 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 C -0.223 4.223 4 N -0.064 5.064 5 C -0.162 4.162 6 C -0.207 4.207 7 C -0.177 4.177 8 C 0.395 3.605 9 O -0.409 6.409 10 N -0.362 5.362 11 C 0.039 3.961 12 H 0.118 0.882 13 C -0.220 4.220 14 C -0.079 4.079 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.465 6.465 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 N -0.094 5.094 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.238 0.762 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.806 10.290 -9.702 24.337 hybrid contribution -0.180 0.393 1.125 1.205 sum -19.986 10.683 -8.578 24.231 Atomic orbital electron populations 1.22223 0.92872 1.03648 1.03468 1.21622 0.95425 0.93513 0.85558 1.22199 1.02867 0.93344 1.03904 1.45731 1.45238 1.05996 1.09442 1.22730 1.07138 1.00852 0.85524 1.21753 1.06455 0.91129 1.01357 1.21935 1.08611 0.96245 0.90958 1.16814 0.76931 0.81719 0.85000 1.90777 1.48709 1.83632 1.17784 1.45846 1.66850 1.09626 1.13839 1.21079 0.96642 0.81349 0.96982 0.88236 1.22152 0.98134 1.00508 1.01194 1.22301 0.93138 0.97500 0.94982 1.60031 1.35457 1.05974 1.28609 1.21691 0.97029 0.97826 0.91723 1.19822 0.85981 0.88303 0.83252 1.90537 1.68292 1.22224 1.65406 1.41864 1.34035 1.19066 1.25223 1.19752 1.12624 1.01638 1.08679 0.87920 1.25254 0.99085 0.96480 0.97184 1.69621 1.42852 1.17408 1.24545 0.85807 0.80046 0.79782 0.78759 1.19234 1.20804 1.20729 1.73496 1.15970 0.97956 1.21941 0.91381 0.89972 0.91650 0.87016 0.91288 0.89562 0.90986 0.80436 0.82159 0.76227 0.92564 0.91837 0.91316 0.94988 0.89382 0.83086 0.93881 0.89449 0.77478 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.52 37.16 0.35 -0.48 16 2 C 0.14 0.94 3.80 -67.93 -0.26 0.68 16 3 C -0.17 -0.77 8.81 37.16 0.33 -0.44 16 4 N -0.27 -2.78 3.22 -54.83 -0.18 -2.95 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.13 10.81 -39.36 -0.43 -2.55 16 7 C -0.02 -0.24 7.13 -82.76 -0.59 -0.84 16 8 C 0.61 9.37 7.79 -12.40 -0.10 9.27 16 9 O -0.53 -9.53 16.59 5.30 0.09 -9.44 16 10 N -0.71 -9.48 4.35 -54.79 -0.24 -9.71 16 11 C 0.14 1.81 2.88 -67.93 -0.20 1.61 16 12 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 14 C 0.05 0.64 5.30 -3.82 -0.02 0.62 16 15 N -0.67 -11.30 6.12 -115.06 -0.70 -12.01 16 16 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 17 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 18 O -0.58 -16.33 15.78 5.55 0.09 -16.24 16 19 N -0.56 -14.56 5.29 -10.97 -0.06 -14.62 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.24 7.06 -51.93 -0.37 -0.12 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.18 0.96 7.17 -52.48 -0.38 0.59 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.40 5.02 7.88 -40.82 -0.32 4.70 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.35 6.25 7.28 -39.29 -0.29 5.96 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 406.38 15.07 6.12 6.12 Total: -1.00 -35.75 406.38 -7.37 -43.13 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -7.50 Total: 16.89 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.09 Total: 9.60 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.06 Total: -66.32 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.18 Total: -25.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.75 -7.37 -43.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699395306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.002 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds