Wall clock time and date at job start Tue Mar 31 2020 20:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.35033 * 124.88349 * 84.71683 * 4 2 1 6 6 C 1.35365 * 107.22814 * 179.89518 * 5 4 2 7 7 C 1.41506 * 105.50368 * 0.35005 * 6 5 4 8 8 C 1.47705 * 126.52096 * 179.79725 * 7 6 5 9 9 O 1.21572 * 120.00102 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00131 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00159 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47035 * 34.99630 * 11 10 8 13 13 C 1.52998 * 109.46798 * 274.99891 * 11 10 8 14 14 C 1.53001 * 109.47204 * 155.00091 * 11 10 8 15 15 N 1.46899 * 109.46927 * 304.99831 * 14 11 10 16 16 C 1.46905 * 111.00192 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47271 * 179.97438 * 16 15 14 18 18 O 1.21289 * 120.00082 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00062 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00251 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99932 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00241 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99994 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47411 * 120.00015 * 24 22 20 27 27 H 1.48500 * 109.47378 * 240.00047 * 24 22 20 28 28 N 1.28468 * 124.88231 * 265.01891 * 4 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.08004 * 126.38762 * 0.02562 * 5 4 2 37 37 H 1.08001 * 127.24898 * 180.09609 * 6 5 4 38 38 H 0.97000 * 120.00215 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47115 * 299.99691 * 13 11 10 40 40 H 1.08998 * 109.47691 * 60.00106 * 13 11 10 41 41 H 1.09006 * 109.47037 * 179.97438 * 13 11 10 42 42 H 1.09000 * 109.47132 * 64.99823 * 14 11 10 43 43 H 1.08996 * 109.46851 * 185.00106 * 14 11 10 44 44 H 1.00898 * 111.00059 * 56.04890 * 15 14 11 45 45 H 1.08994 * 109.47022 * 300.00269 * 16 15 14 46 46 H 1.09002 * 109.46455 * 59.99880 * 16 15 14 47 47 H 0.97000 * 119.99454 * 359.97438 * 19 17 16 48 48 H 0.96993 * 119.99987 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1796 -0.1163 -2.4077 6 6 2.6474 -1.0715 -3.2450 7 6 2.7459 -2.2459 -2.4618 8 6 3.2060 -3.5724 -2.9205 9 8 3.5473 -3.7311 -4.0765 10 7 3.2473 -4.6068 -2.0576 11 6 3.7042 -5.9224 -2.5125 12 1 4.4927 -5.7967 -3.2545 13 6 2.5319 -6.6812 -3.1377 14 6 4.2466 -6.7141 -1.3209 15 7 5.2919 -5.9314 -0.6481 16 6 5.8369 -6.6616 0.5043 17 6 6.9043 -5.8296 1.1670 18 8 7.1834 -4.7357 0.7234 19 7 7.5490 -6.3009 2.2528 20 6 8.5197 -5.5438 2.8560 21 1 8.7682 -4.5698 2.4611 22 6 9.1839 -6.0295 3.9757 23 7 8.8812 -7.2145 4.4567 24 14 10.5070 -4.9983 4.7973 25 1 10.6571 -3.7133 4.0682 26 1 10.1197 -4.7259 6.2047 27 1 11.7959 -5.7354 4.7724 28 7 2.3495 -1.9309 -1.2448 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.9755 0.9136 -2.6608 37 1 2.8900 -0.9616 -4.2917 38 1 2.9746 -4.4804 -1.1354 39 1 1.7433 -6.8070 -2.3958 40 1 2.1454 -6.1173 -3.9867 41 1 2.8718 -7.6599 -3.4766 42 1 3.4366 -6.9165 -0.6201 43 1 4.6674 -7.6563 -1.6719 44 1 4.9435 -5.0262 -0.3703 45 1 5.0378 -6.8632 1.2175 46 1 6.2685 -7.6037 0.1662 47 1 7.3255 -7.1755 2.6077 48 1 9.3446 -7.5534 5.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699395306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:16 Heat of formation + Delta-G solvation = -25.124055 kcal Electronic energy + Delta-G solvation = -28753.816605 eV Core-core repulsion = 24651.254683 eV Total energy + Delta-G solvation = -4102.561922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.67789 -40.74718 -40.11850 -37.88093 -36.73519 -36.04914 -35.10792 -33.28002 -32.52194 -31.89657 -30.80061 -28.99086 -28.24171 -26.74085 -25.55076 -24.58431 -23.61320 -21.95799 -21.51527 -21.09077 -20.86349 -19.92875 -18.92164 -17.99407 -17.69813 -17.27880 -16.94232 -16.88409 -16.38581 -16.13100 -15.81676 -15.53687 -15.34297 -15.18362 -15.07591 -14.69959 -14.37231 -14.20600 -13.96530 -13.89545 -13.56693 -13.33884 -13.27614 -13.10701 -13.07994 -13.03607 -12.81101 -12.69252 -12.42170 -12.37897 -12.16096 -12.13091 -11.98795 -11.88734 -11.53190 -11.24015 -10.40751 -10.31803 -10.14342 -10.02852 -9.96449 -9.34868 -8.48233 -5.96947 0.53817 1.19817 1.35199 1.40458 1.48769 1.54778 2.03638 2.15734 2.28135 2.39101 2.87882 3.18934 3.30316 3.48281 3.71566 3.84141 3.87204 3.91954 4.04462 4.18771 4.22270 4.26592 4.36385 4.48813 4.57440 4.62913 4.64456 4.67103 4.72597 4.74670 4.75792 4.78588 4.80928 4.86623 5.05978 5.15221 5.20615 5.26896 5.35063 5.39578 5.48928 5.85544 5.90420 6.07844 6.30963 6.39941 6.59073 6.91023 7.11474 7.16229 7.54637 8.10784 8.69433 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002662 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.779725 B =10515.122217 C =12747.622796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.271 5.271 5 C 0.000 4.000 6 C -0.204 4.204 7 C -0.049 4.049 8 C 0.604 3.396 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.144 3.856 12 H 0.071 0.929 13 C -0.151 4.151 14 C 0.057 3.943 15 N -0.688 5.688 16 C 0.065 3.935 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.268 1.268 27 H -0.270 1.270 28 N -0.278 5.278 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.221 0.779 37 H 0.163 0.837 38 H 0.407 0.593 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.340 0.660 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.979 10.785 -8.416 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.060 5.060 5 C -0.143 4.143 6 C -0.232 4.232 7 C -0.208 4.208 8 C 0.390 3.610 9 O -0.449 6.449 10 N -0.354 5.354 11 C 0.039 3.961 12 H 0.090 0.910 13 C -0.209 4.209 14 C -0.072 4.072 15 N -0.321 5.321 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.200 1.200 26 H -0.193 1.193 27 H -0.195 1.195 28 N -0.115 5.115 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.181 0.819 38 H 0.243 0.757 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.159 0.841 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.173 10.646 -8.605 25.213 hybrid contribution 0.194 0.309 0.825 0.902 sum -20.979 10.956 -7.780 24.914 Atomic orbital electron populations 1.22194 0.91215 1.03000 1.05071 1.22000 0.96698 0.94344 0.83982 1.22218 1.01791 0.91905 1.05899 1.46195 1.43840 1.05282 1.10708 1.23293 1.04658 1.01963 0.84394 1.21991 1.07854 0.91310 1.02052 1.21939 1.10425 0.96362 0.92051 1.17124 0.76525 0.82625 0.84755 1.90734 1.50622 1.84358 1.19171 1.45854 1.66053 1.09706 1.13770 1.21119 0.96969 0.81350 0.96621 0.91033 1.22063 0.97352 1.00733 1.00791 1.22381 0.92803 0.97264 0.94772 1.60019 1.37612 1.06162 1.28319 1.21566 0.95783 0.97019 0.92351 1.20944 0.86241 0.88178 0.82341 1.90505 1.69791 1.24530 1.66442 1.41915 1.34048 1.19116 1.25825 1.19677 1.14844 1.01557 1.10292 0.90639 1.26026 1.00561 0.97575 0.96996 1.69672 1.43402 1.18134 1.24809 0.84884 0.77626 0.77905 0.77993 1.20011 1.19326 1.19546 1.73430 1.16759 0.99683 1.21584 0.93133 0.87625 0.90748 0.88013 0.89483 0.87420 0.92626 0.76213 0.81900 0.75726 0.91020 0.93415 0.89278 0.92444 0.87612 0.84125 0.91021 0.87281 0.76856 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.52 71.98 0.69 -0.60 16 2 C 0.13 1.57 3.80 44.99 0.17 1.74 16 3 C -0.16 -1.12 8.81 71.98 0.63 -0.48 16 4 N -0.27 -5.31 3.22 -327.38 -1.05 -6.36 16 5 C 0.00 0.00 10.54 83.54 0.88 0.88 16 6 C -0.20 -4.96 10.81 22.41 0.24 -4.71 16 7 C -0.05 -1.45 7.13 42.46 0.30 -1.15 16 8 C 0.60 19.63 7.79 86.75 0.68 20.31 16 9 O -0.57 -21.71 16.59 -3.94 -0.07 -21.78 16 10 N -0.70 -19.37 4.35 -445.53 -1.94 -21.31 16 11 C 0.14 3.60 2.88 44.99 0.13 3.73 16 12 H 0.07 2.21 7.58 -2.39 -0.02 2.20 16 13 C -0.15 -2.92 9.48 71.98 0.68 -2.23 16 14 C 0.06 1.32 5.30 86.30 0.46 1.78 16 15 N -0.69 -22.92 6.12 -517.94 -3.17 -26.09 16 16 C 0.06 2.26 6.17 85.56 0.53 2.78 16 17 C 0.44 21.36 7.82 87.66 0.69 22.05 16 18 O -0.63 -36.37 15.78 -3.06 -0.05 -36.42 16 19 N -0.57 -29.85 5.29 -306.99 -1.62 -31.47 16 20 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 24 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 N -0.28 -7.40 11.67 -48.17 -0.56 -7.96 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 0.30 7.06 -2.39 -0.02 0.29 16 34 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.22 1.66 7.17 -2.91 -0.02 1.64 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.41 10.40 7.88 -92.71 -0.73 9.67 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.34 12.32 7.28 -89.70 -0.65 11.67 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 47 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -81.06 406.38 0.09 -80.97 By element: Atomic # 1 Polarization: 50.26 SS G_CDS: -1.12 Total: 49.14 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 7.35 Total: 25.37 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -8.06 Total: -142.73 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -0.11 Total: -58.20 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -81.06 0.09 -80.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699395306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.849 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds