Wall clock time and date at job start Tue Mar 31 2020 19:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47249 * 240.00350 * 2 1 3 5 5 N 1.46902 * 109.47477 * 184.99957 * 4 2 1 6 6 C 1.46896 * 111.00009 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47036 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00116 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00309 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00181 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00187 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00062 * 180.02562 * 10 9 7 13 13 N 1.31416 * 120.00323 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00112 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46990 * 90.00097 * 14 12 10 16 16 H 1.48503 * 109.47435 * 210.00557 * 14 12 10 17 17 H 1.48506 * 109.47108 * 330.00496 * 14 12 10 18 18 N 1.46493 * 109.47253 * 120.00220 * 2 1 3 19 19 C 1.34782 * 120.00325 * 274.99821 * 18 2 1 20 20 O 1.21286 * 119.99590 * 0.02562 * 19 18 2 21 21 C 1.50698 * 120.00288 * 180.02562 * 19 18 2 22 22 C 1.53000 * 109.46984 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.47398 * 54.99888 * 22 21 19 24 24 C 1.52997 * 109.47060 * 294.99719 * 22 21 19 25 25 N 1.46500 * 109.47023 * 174.99959 * 22 21 19 26 26 C 1.36880 * 126.39763 * 239.99410 * 25 22 21 27 27 C 1.34666 * 106.82183 * 179.97438 * 26 25 22 28 28 N 1.34135 * 108.01595 * 0.02562 * 27 26 25 29 29 C 1.30501 * 109.25833 * 359.71982 * 28 27 26 30 30 H 1.09002 * 109.46989 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.47151 * 59.99597 * 1 2 3 32 32 H 1.08996 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46995 * 305.00383 * 4 2 1 34 34 H 1.09001 * 109.47419 * 64.99806 * 4 2 1 35 35 H 1.00898 * 110.99692 * 303.95427 * 5 4 2 36 36 H 1.09001 * 109.47087 * 299.99528 * 6 5 4 37 37 H 1.09001 * 109.47646 * 59.99796 * 6 5 4 38 38 H 0.97002 * 119.99505 * 359.97438 * 9 7 6 39 39 H 0.97000 * 119.99957 * 179.97438 * 13 12 10 40 40 H 0.97003 * 120.00270 * 94.99683 * 18 2 1 41 41 H 1.08990 * 109.47311 * 60.00327 * 21 19 18 42 42 H 1.09001 * 109.47069 * 300.00092 * 21 19 18 43 43 H 1.09002 * 109.47153 * 300.00319 * 24 22 21 44 44 H 1.08998 * 109.47533 * 59.99948 * 24 22 21 45 45 H 1.08996 * 109.47853 * 180.02562 * 24 22 21 46 46 H 1.08005 * 126.59163 * 0.04499 * 26 25 22 47 47 H 1.07995 * 125.99515 * 180.02562 * 27 26 25 48 48 H 1.07993 * 125.65383 * 180.29404 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1905 6 6 4.0302 -1.5157 -2.3763 7 6 5.5316 -1.6042 -2.2809 8 8 6.1067 -1.1393 -1.3194 9 7 6.2353 -2.2008 -3.2634 10 6 7.6011 -2.2817 -3.1764 11 1 8.1132 -1.8670 -2.3207 12 6 8.3266 -2.8963 -4.1896 13 7 9.6359 -2.9734 -4.1064 14 14 7.4410 -3.6129 -5.6700 15 1 7.3208 -2.5749 -6.7251 16 1 8.2120 -4.7676 -6.1970 17 1 6.0861 -4.0659 -5.2648 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8582 1.1584 2.4117 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2543 4.7588 23 1 1.7207 0.7124 4.8916 24 6 3.7368 1.3418 4.4675 25 7 3.0749 -0.4616 5.9810 26 6 2.3309 -0.5576 7.1260 27 6 3.0442 -1.3013 7.9930 28 7 4.1927 -1.6494 7.3939 29 6 4.2156 -1.1546 6.1865 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9280 0.0826 -1.0824 36 1 3.6094 -2.5198 -2.4295 37 1 3.7556 -0.9587 -3.2721 38 1 5.7753 -2.5735 -4.0318 39 1 10.1423 -3.4028 -4.8136 40 1 2.2490 -1.6318 1.1525 41 1 3.6493 -1.1204 3.3978 42 1 1.9778 -1.5510 3.8324 43 1 4.7169 0.8837 4.3347 44 1 3.4586 1.8744 3.5581 45 1 3.7734 2.0418 5.3021 46 1 1.3582 -0.1218 7.3002 47 1 2.7442 -1.5703 8.9950 48 1 5.0151 -1.2772 5.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699398178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:45 Heat of formation + Delta-G solvation = -7.367772 kcal Electronic energy + Delta-G solvation = -28604.488627 eV Core-core repulsion = 24502.696675 eV Total energy + Delta-G solvation = -4101.791952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.27755 -40.18994 -38.58996 -37.13975 -35.73438 -34.44675 -33.80864 -31.81124 -31.66379 -30.83028 -29.39436 -28.10415 -27.86346 -25.13502 -23.82081 -23.18867 -21.80712 -21.46902 -20.78604 -20.15168 -19.44743 -18.42785 -17.90240 -16.95477 -16.63798 -15.97696 -15.89558 -15.52545 -15.25163 -14.96478 -14.75769 -14.53834 -14.20977 -14.07513 -13.94431 -13.77041 -13.60728 -13.33845 -13.25177 -13.09320 -12.77737 -12.68037 -12.33599 -12.24725 -12.11399 -11.86315 -11.78385 -11.72423 -11.57358 -11.21931 -11.11609 -10.65024 -10.13121 -10.06674 -10.03076 -9.80770 -9.63365 -9.23538 -8.69666 -8.68682 -8.31748 -8.23342 -6.36385 -3.88257 1.87942 2.36570 2.45604 2.97240 3.01654 3.03660 3.09047 3.10673 3.66331 3.91122 4.05054 4.11406 4.35853 4.49757 4.58210 4.60338 4.70935 4.74501 4.82642 4.91573 5.08404 5.11152 5.16299 5.17566 5.25190 5.27108 5.39688 5.40559 5.43948 5.52067 5.53126 5.58635 5.70070 5.73750 5.83019 5.88918 5.94876 6.13434 6.31990 6.56742 6.90781 7.00697 7.32712 7.39550 7.51978 7.93204 8.01681 8.08340 8.53372 8.89112 9.36275 9.75567 10.76579 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.002245 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.008399 B =12467.095530 C =14256.552830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.088 0.912 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.565 6.565 9 N -0.589 5.589 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.879 5.879 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.704 5.704 19 C 0.524 3.476 20 O -0.546 6.546 21 C -0.155 4.155 22 C 0.151 3.849 23 H 0.107 0.893 24 C -0.168 4.168 25 N -0.454 5.454 26 C -0.058 4.058 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.185 3.815 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.352 0.648 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.407 0.593 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.171 0.829 47 H 0.167 0.833 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.030 4.259 11.564 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.447 6.447 9 N -0.229 5.229 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.519 5.519 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 N -0.354 5.354 19 C 0.310 3.690 20 O -0.425 6.425 21 C -0.196 4.196 22 C 0.048 3.952 23 H 0.125 0.875 24 C -0.226 4.226 25 N -0.137 5.137 26 C -0.191 4.191 27 C -0.182 4.182 28 N -0.215 5.215 29 C -0.097 4.097 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.189 0.811 47 H 0.184 0.816 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -21.042 4.384 12.756 24.994 hybrid contribution -1.161 -0.075 -2.456 2.718 sum -22.203 4.309 10.299 24.852 Atomic orbital electron populations 1.22137 0.94890 1.02271 1.02706 1.20956 0.93624 0.97529 0.83884 0.89403 1.22326 0.89429 1.00782 0.95777 1.60052 1.03116 1.27004 1.39794 1.21712 0.95135 1.00016 0.91632 1.19679 0.87887 0.84300 0.84770 1.90571 1.70972 1.50606 1.32535 1.42209 1.07886 1.52779 1.19977 1.19422 0.79475 1.36117 1.08475 0.86275 1.25054 0.95453 0.97601 0.98064 1.69621 1.05083 1.43199 1.34023 0.86667 0.79570 0.79825 0.83272 1.19654 1.20118 1.19515 1.45809 1.66238 1.14552 1.08823 1.20123 0.77346 0.87093 0.84441 1.90681 1.50782 1.15792 1.85219 1.22014 1.05048 0.99515 0.92994 1.21134 1.01444 0.91668 0.80953 0.87509 1.22307 0.98008 0.97968 1.04279 1.45811 1.16216 1.39203 1.12465 1.22741 1.00363 1.08163 0.87867 1.22302 0.92501 1.02667 1.00684 1.70329 1.21665 1.23903 1.05610 1.24986 0.91371 0.96995 0.96366 0.91868 0.91530 0.92301 0.90395 0.93769 0.82793 0.89461 0.93691 0.79706 0.91548 0.75757 0.87394 0.88216 0.91792 0.88270 0.91981 0.81146 0.81567 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16 2 C 0.15 1.28 2.81 -67.94 -0.19 1.09 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C 0.05 0.43 5.24 -3.82 -0.02 0.40 16 5 N -0.67 -8.72 5.85 -115.06 -0.67 -9.39 16 6 C 0.05 0.70 6.17 -4.98 -0.03 0.67 16 7 C 0.45 9.58 7.82 -10.99 -0.09 9.50 16 8 O -0.56 -14.45 15.78 5.54 0.09 -14.37 16 9 N -0.59 -13.47 5.09 -10.96 -0.06 -13.53 16 10 C -0.31 -8.45 10.16 -14.94 -0.15 -8.61 16 11 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.30 13.96 55.50 0.77 -24.52 16 14 Si 0.88 18.86 27.74 -169.99 -4.71 14.14 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 18 N -0.70 -6.23 4.80 -53.81 -0.26 -6.48 16 19 C 0.52 5.08 7.51 -10.98 -0.08 5.00 16 20 O -0.55 -6.74 13.63 5.55 0.08 -6.66 16 21 C -0.16 -1.18 5.17 -27.88 -0.14 -1.33 16 22 C 0.15 1.23 2.70 -67.93 -0.18 1.05 16 23 H 0.11 0.86 7.90 -51.93 -0.41 0.45 16 24 C -0.17 -1.52 8.99 37.16 0.33 -1.18 16 25 N -0.45 -4.13 2.62 -111.46 -0.29 -4.43 16 26 C -0.06 -0.51 11.54 -16.56 -0.19 -0.71 16 27 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 28 N -0.50 -6.31 11.25 -14.67 -0.17 -6.47 16 29 C 0.19 1.96 11.65 -90.37 -1.05 0.90 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.35 5.13 8.43 -39.29 -0.33 4.80 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.41 3.26 8.60 -40.82 -0.35 2.91 16 41 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 44 H 0.10 1.05 5.95 -51.93 -0.31 0.74 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 47 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.20 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -34.84 401.46 -8.42 -43.26 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.49 Total: 15.98 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.75 Total: 6.43 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.67 Total: -64.83 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.16 Total: -21.03 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.84 -8.42 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699398178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.889 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds