Wall clock time and date at job start Tue Mar 31 2020 19:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47249 * 240.00350 * 2 1 3 5 5 N 1.46902 * 109.47477 * 184.99957 * 4 2 1 6 6 C 1.46896 * 111.00009 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47036 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00116 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00309 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00181 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00187 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00062 * 180.02562 * 10 9 7 13 13 N 1.31416 * 120.00323 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00112 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46990 * 90.00097 * 14 12 10 16 16 H 1.48503 * 109.47435 * 210.00557 * 14 12 10 17 17 H 1.48506 * 109.47108 * 330.00496 * 14 12 10 18 18 N 1.46493 * 109.47253 * 120.00220 * 2 1 3 19 19 C 1.34782 * 120.00325 * 274.99821 * 18 2 1 20 20 O 1.21286 * 119.99590 * 0.02562 * 19 18 2 21 21 C 1.50698 * 120.00288 * 180.02562 * 19 18 2 22 22 C 1.53000 * 109.46984 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.47398 * 54.99888 * 22 21 19 24 24 C 1.52997 * 109.47060 * 294.99719 * 22 21 19 25 25 N 1.46500 * 109.47023 * 174.99959 * 22 21 19 26 26 C 1.36880 * 126.39763 * 239.99410 * 25 22 21 27 27 C 1.34666 * 106.82183 * 179.97438 * 26 25 22 28 28 N 1.34135 * 108.01595 * 0.02562 * 27 26 25 29 29 C 1.30501 * 109.25833 * 359.71982 * 28 27 26 30 30 H 1.09002 * 109.46989 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.47151 * 59.99597 * 1 2 3 32 32 H 1.08996 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46995 * 305.00383 * 4 2 1 34 34 H 1.09001 * 109.47419 * 64.99806 * 4 2 1 35 35 H 1.00898 * 110.99692 * 303.95427 * 5 4 2 36 36 H 1.09001 * 109.47087 * 299.99528 * 6 5 4 37 37 H 1.09001 * 109.47646 * 59.99796 * 6 5 4 38 38 H 0.97002 * 119.99505 * 359.97438 * 9 7 6 39 39 H 0.97000 * 119.99957 * 179.97438 * 13 12 10 40 40 H 0.97003 * 120.00270 * 94.99683 * 18 2 1 41 41 H 1.08990 * 109.47311 * 60.00327 * 21 19 18 42 42 H 1.09001 * 109.47069 * 300.00092 * 21 19 18 43 43 H 1.09002 * 109.47153 * 300.00319 * 24 22 21 44 44 H 1.08998 * 109.47533 * 59.99948 * 24 22 21 45 45 H 1.08996 * 109.47853 * 180.02562 * 24 22 21 46 46 H 1.08005 * 126.59163 * 0.04499 * 26 25 22 47 47 H 1.07995 * 125.99515 * 180.02562 * 27 26 25 48 48 H 1.07993 * 125.65383 * 180.29404 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1905 6 6 4.0302 -1.5157 -2.3763 7 6 5.5316 -1.6042 -2.2809 8 8 6.1067 -1.1393 -1.3194 9 7 6.2353 -2.2008 -3.2634 10 6 7.6011 -2.2817 -3.1764 11 1 8.1132 -1.8670 -2.3207 12 6 8.3266 -2.8963 -4.1896 13 7 9.6359 -2.9734 -4.1064 14 14 7.4410 -3.6129 -5.6700 15 1 7.3208 -2.5749 -6.7251 16 1 8.2120 -4.7676 -6.1970 17 1 6.0861 -4.0659 -5.2648 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8582 1.1584 2.4117 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2543 4.7588 23 1 1.7207 0.7124 4.8916 24 6 3.7368 1.3418 4.4675 25 7 3.0749 -0.4616 5.9810 26 6 2.3309 -0.5576 7.1260 27 6 3.0442 -1.3013 7.9930 28 7 4.1927 -1.6494 7.3939 29 6 4.2156 -1.1546 6.1865 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 3.9280 0.0826 -1.0824 36 1 3.6094 -2.5198 -2.4295 37 1 3.7556 -0.9587 -3.2721 38 1 5.7753 -2.5735 -4.0318 39 1 10.1423 -3.4028 -4.8136 40 1 2.2490 -1.6318 1.1525 41 1 3.6493 -1.1204 3.3978 42 1 1.9778 -1.5510 3.8324 43 1 4.7169 0.8837 4.3347 44 1 3.4586 1.8744 3.5581 45 1 3.7734 2.0418 5.3021 46 1 1.3582 -0.1218 7.3002 47 1 2.7442 -1.5703 8.9950 48 1 5.0151 -1.2772 5.4710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699398178.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:44 Heat of formation + Delta-G solvation = -34.051911 kcal Electronic energy + Delta-G solvation = -28605.645738 eV Core-core repulsion = 24502.696675 eV Total energy + Delta-G solvation = -4102.949063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02705 -40.96596 -40.26020 -38.02682 -36.54773 -36.02920 -35.10883 -33.73163 -32.52011 -31.58995 -30.12839 -29.09582 -28.79304 -26.61354 -24.71419 -24.30139 -22.55053 -22.20149 -21.55242 -21.23758 -20.88401 -20.24343 -18.62014 -18.04290 -17.40661 -17.37507 -16.76607 -16.61898 -16.44966 -16.09829 -15.74519 -15.60019 -15.24306 -14.96556 -14.89180 -14.77145 -14.54522 -14.52023 -14.29985 -14.16226 -13.99776 -13.82433 -13.37338 -13.12677 -13.01856 -12.93584 -12.79221 -12.62943 -12.48335 -12.40683 -12.26977 -11.97813 -11.81656 -11.50279 -10.93680 -10.86946 -10.59924 -10.42916 -10.24165 -9.96717 -9.42931 -9.34124 -8.40684 -6.01696 1.14782 1.30420 1.36195 1.45266 1.62438 1.73080 1.97817 2.23612 2.24331 2.39015 2.73061 3.16143 3.40523 3.43886 3.68315 3.81521 3.88211 3.88448 4.04239 4.12706 4.17260 4.25294 4.39750 4.46020 4.49417 4.51467 4.59016 4.60356 4.67398 4.71674 4.76825 4.78967 4.84023 4.86871 5.08069 5.17130 5.30734 5.40321 5.52946 5.61300 5.85788 5.90217 6.03541 6.26575 6.31810 6.60220 6.61595 6.89371 7.16586 7.29339 7.41196 7.98205 8.76967 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.002245 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.008399 B =12467.095530 C =14256.552830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.065 0.935 4 C 0.054 3.946 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.614 6.614 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.054 0.946 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.258 1.258 16 H -0.277 1.277 17 H -0.228 1.228 18 N -0.700 5.700 19 C 0.521 3.479 20 O -0.576 6.576 21 C -0.147 4.147 22 C 0.158 3.842 23 H 0.113 0.887 24 C -0.163 4.163 25 N -0.450 5.450 26 C -0.050 4.050 27 C -0.057 4.057 28 N -0.537 5.537 29 C 0.173 3.827 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.340 0.660 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.413 0.587 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.202 0.798 47 H 0.182 0.818 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.953 3.112 9.665 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.075 4.075 5 N -0.313 5.313 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.234 5.234 10 C -0.457 4.457 11 H 0.072 0.928 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.151 1.151 18 N -0.350 5.350 19 C 0.308 3.692 20 O -0.457 6.457 21 C -0.187 4.187 22 C 0.055 3.945 23 H 0.131 0.869 24 C -0.221 4.221 25 N -0.133 5.133 26 C -0.183 4.183 27 C -0.204 4.204 28 N -0.255 5.255 29 C -0.109 4.109 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.199 0.801 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -25.014 3.225 10.855 27.457 hybrid contribution 0.086 0.381 -1.731 1.775 sum -24.928 3.606 9.124 26.789 Atomic orbital electron populations 1.22051 0.93271 1.03143 1.02619 1.20959 0.94739 0.96365 0.83896 0.91664 1.22392 0.86614 1.02250 0.96290 1.60056 1.05493 1.26361 1.39413 1.21636 0.89225 1.02542 0.93529 1.21078 0.90899 0.81480 0.83019 1.90555 1.72993 1.51918 1.34420 1.42041 1.06060 1.53873 1.21391 1.18987 0.82004 1.37354 1.07327 0.92794 1.26151 0.96203 0.97388 1.01880 1.69813 1.07562 1.44505 1.35779 0.85353 0.79793 0.78741 0.77542 1.18268 1.20264 1.15105 1.45834 1.65746 1.14776 1.08689 1.20414 0.76899 0.86771 0.85121 1.90673 1.52184 1.17079 1.85722 1.21954 1.05386 0.99527 0.91863 1.21087 1.01216 0.91392 0.80817 0.86873 1.22222 0.98188 0.98198 1.03482 1.45847 1.15871 1.38748 1.12787 1.23228 1.01038 1.06954 0.87043 1.22701 0.92349 1.03550 1.01835 1.70287 1.23168 1.25314 1.06780 1.25218 0.92181 0.97264 0.96264 0.93367 0.90240 0.90868 0.88311 0.92003 0.84171 0.86326 0.90541 0.77459 0.91209 0.75090 0.87316 0.86481 0.92079 0.89797 0.91980 0.78135 0.80053 0.76990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.48 71.98 0.68 -1.13 16 2 C 0.15 2.28 2.81 44.99 0.13 2.41 16 3 H 0.07 1.34 7.58 -2.39 -0.02 1.33 16 4 C 0.05 0.77 5.24 86.30 0.45 1.23 16 5 N -0.68 -16.17 5.85 -517.94 -3.03 -19.20 16 6 C 0.06 1.62 6.17 85.56 0.53 2.15 16 7 C 0.45 18.79 7.82 87.66 0.69 19.48 16 8 O -0.61 -32.41 15.78 -3.08 -0.05 -32.46 16 9 N -0.59 -26.55 5.09 -306.98 -1.56 -28.11 16 10 C -0.33 -18.74 10.16 84.04 0.85 -17.88 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -55.89 13.96 21.66 0.30 -55.58 16 14 Si 0.97 37.59 27.74 68.60 1.90 39.49 16 15 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 16 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 18 N -0.70 -11.31 4.80 -442.55 -2.12 -13.43 16 19 C 0.52 9.71 7.51 87.66 0.66 10.36 16 20 O -0.58 -14.14 13.63 -3.05 -0.04 -14.18 16 21 C -0.15 -2.09 5.17 29.85 0.15 -1.93 16 22 C 0.16 2.44 2.70 44.99 0.12 2.56 16 23 H 0.11 1.66 7.90 -2.39 -0.02 1.64 16 24 C -0.16 -2.98 8.99 71.98 0.65 -2.33 16 25 N -0.45 -7.78 2.62 -506.55 -1.33 -9.11 16 26 C -0.05 -0.80 11.54 83.09 0.96 0.16 16 27 C -0.06 -1.16 11.87 83.52 0.99 -0.17 16 28 N -0.54 -13.69 11.25 -200.31 -2.25 -15.95 16 29 C 0.17 3.65 11.65 180.26 2.10 5.74 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.34 9.59 8.43 -89.70 -0.76 8.83 16 36 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.39 14.25 5.76 -92.71 -0.53 13.71 16 39 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.41 5.74 8.60 -92.71 -0.80 4.94 16 41 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.12 7.95 -2.39 -0.02 1.10 16 44 H 0.08 1.83 5.95 -2.39 -0.01 1.82 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 47 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 48 H 0.21 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -82.59 401.46 0.09 -82.50 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -1.15 Total: 45.90 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 9.43 Total: 20.14 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -9.99 Total: -141.38 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.09 Total: -46.65 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.90 Total: 39.49 kcal Total: -82.59 0.09 -82.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699398178.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.446 kcal (2) G-P(sol) polarization free energy of solvation -82.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds