Wall clock time and date at job start Tue Mar 31 2020 19:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 N 1.46899 * 109.47420 * 184.99799 * 4 2 1 6 6 C 1.46892 * 111.00057 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47305 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00023 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.37104 * 119.99561 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00081 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99466 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99838 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99819 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46958 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46869 * 120.00109 * 14 12 10 17 17 H 1.48494 * 109.47216 * 240.00551 * 14 12 10 18 18 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 19 19 C 1.34773 * 119.99968 * 275.00042 * 18 2 1 20 20 O 1.21283 * 120.00360 * 359.73034 * 19 18 2 21 21 C 1.50706 * 120.00081 * 180.02562 * 19 18 2 22 22 C 1.52998 * 109.47348 * 179.72561 * 21 19 18 23 23 H 1.08995 * 109.47026 * 305.00506 * 22 21 19 24 24 C 1.53005 * 109.46813 * 65.00232 * 22 21 19 25 25 N 1.46498 * 109.47113 * 184.99879 * 22 21 19 26 26 C 1.36876 * 126.39757 * 119.71585 * 25 22 21 27 27 C 1.34667 * 106.81844 * 179.84065 * 26 25 22 28 28 N 1.34125 * 108.02285 * 0.42239 * 27 26 25 29 29 C 1.30500 * 109.25409 * 359.72954 * 28 27 26 30 30 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 31 31 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 32 32 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47015 * 305.00545 * 4 2 1 34 34 H 1.09006 * 109.46509 * 65.00046 * 4 2 1 35 35 H 1.00900 * 110.99991 * 303.95532 * 5 4 2 36 36 H 1.08995 * 109.47498 * 300.00191 * 6 5 4 37 37 H 1.09003 * 109.46976 * 60.00171 * 6 5 4 38 38 H 0.96994 * 120.00448 * 359.97438 * 9 7 6 39 39 H 0.97006 * 119.99666 * 180.02562 * 13 12 10 40 40 H 0.96998 * 119.99507 * 95.00898 * 18 2 1 41 41 H 1.09001 * 109.46564 * 299.73030 * 21 19 18 42 42 H 1.08998 * 109.47012 * 59.72084 * 21 19 18 43 43 H 1.08991 * 109.47325 * 59.99870 * 24 22 21 44 44 H 1.09005 * 109.46643 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.47034 * 299.99245 * 24 22 21 46 46 H 1.08008 * 126.58930 * 359.97438 * 26 25 22 47 47 H 1.08006 * 125.99126 * 180.11192 * 27 26 25 48 48 H 1.08004 * 125.65080 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5042 -0.8267 -1.1902 6 6 4.0306 -1.5149 -2.3764 7 6 5.5318 -1.6044 -2.2803 8 8 6.1068 -1.1401 -1.3185 9 7 6.2357 -2.1995 -3.2636 10 6 7.6016 -2.2804 -3.1764 11 1 8.1133 -1.8677 -2.3196 12 6 8.3272 -2.8945 -4.1899 13 7 7.7044 -3.3971 -5.2321 14 14 10.1881 -3.0054 -4.0708 15 1 10.6421 -2.3690 -2.8082 16 1 10.6006 -4.4319 -4.0817 17 1 10.8009 -2.3040 -5.2274 18 7 2.0183 -0.6905 1.1963 19 6 2.1469 -0.0181 2.3572 20 8 1.8632 1.1599 2.4104 21 6 2.6497 -0.7282 3.5877 22 6 2.7075 0.2566 4.7571 23 1 3.3113 1.1194 4.4760 24 6 1.2909 0.7174 5.1062 25 7 3.3076 -0.4014 5.9204 26 6 4.4502 -0.0193 6.5700 27 6 4.6362 -0.8929 7.5778 28 7 3.6395 -1.7897 7.5388 29 6 2.8398 -1.5016 6.5486 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6055 -1.7198 -1.2949 34 1 1.7518 -0.1584 -2.1369 35 1 3.9281 0.0826 -1.0822 36 1 3.6098 -2.5189 -2.4305 37 1 3.7560 -0.9571 -3.2717 38 1 5.7761 -2.5705 -4.0329 39 1 8.2110 -3.8260 -5.9395 40 1 2.2490 -1.6317 1.1528 41 1 1.9748 -1.5475 3.8355 42 1 3.6470 -1.1243 3.3965 43 1 0.6871 -0.1454 5.3873 44 1 1.3321 1.4194 5.9391 45 1 0.8445 1.2070 4.2407 46 1 5.0802 0.8226 6.3232 47 1 5.4485 -0.8775 8.2894 48 1 1.9514 -2.0520 6.2763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699398179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:48 Heat of formation + Delta-G solvation = -14.807465 kcal Electronic energy + Delta-G solvation = -28519.064713 eV Core-core repulsion = 24416.950152 eV Total energy + Delta-G solvation = -4102.114561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27225 -40.16207 -38.40590 -37.07148 -35.72339 -34.38138 -33.73773 -31.73444 -31.26678 -30.82232 -29.38693 -28.12057 -27.68924 -25.11596 -23.86413 -23.27302 -21.76537 -21.45585 -20.75208 -20.15295 -19.30523 -17.96343 -17.88923 -16.95761 -16.64602 -15.99917 -15.75537 -15.46932 -15.14622 -14.87121 -14.64303 -14.56493 -14.16611 -14.06304 -13.92575 -13.66129 -13.61205 -13.53159 -13.22999 -13.15776 -12.72082 -12.65432 -12.18582 -12.08184 -11.87901 -11.83155 -11.63450 -11.59169 -11.53728 -11.10314 -11.05889 -10.38350 -10.27710 -10.13949 -10.04116 -9.79882 -9.57496 -9.20437 -8.67484 -8.56594 -8.19782 -8.02236 -6.47295 -3.88251 1.89271 2.42091 2.43543 3.04179 3.11802 3.12626 3.23747 3.30826 3.83772 3.97391 4.09678 4.21872 4.38866 4.50615 4.53927 4.66364 4.72323 4.83513 4.95447 5.01108 5.05548 5.14677 5.16608 5.20579 5.28334 5.35388 5.39711 5.44474 5.46630 5.50310 5.57517 5.69413 5.78022 5.82535 5.87163 5.93735 6.12700 6.17958 6.35226 6.58243 7.00813 7.04190 7.36243 7.48878 7.50301 7.92284 8.00576 8.04484 8.54861 9.12373 9.48047 9.98987 10.70386 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.002291 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.642284 B =12220.629107 C =14548.927851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.703 5.703 19 C 0.524 3.476 20 O -0.547 6.547 21 C -0.155 4.155 22 C 0.149 3.851 23 H 0.110 0.890 24 C -0.165 4.165 25 N -0.453 5.453 26 C -0.052 4.052 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.179 3.821 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.351 0.649 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.407 0.593 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.760 5.312 13.857 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.353 5.353 19 C 0.310 3.690 20 O -0.426 6.426 21 C -0.195 4.195 22 C 0.046 3.954 23 H 0.128 0.872 24 C -0.223 4.223 25 N -0.136 5.136 26 C -0.185 4.185 27 C -0.182 4.182 28 N -0.215 5.215 29 C -0.103 4.103 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.242 0.758 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.190 0.810 47 H 0.185 0.815 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.647 5.212 15.161 23.111 hybrid contribution 0.847 0.432 -1.966 2.184 sum -15.800 5.644 13.194 21.344 Atomic orbital electron populations 1.22136 0.94869 1.02285 1.02673 1.20967 0.93623 0.97505 0.83914 0.89475 1.22322 0.89599 1.00747 0.95670 1.60077 1.02987 1.26861 1.40045 1.21679 0.95377 0.99850 0.91325 1.19787 0.87974 0.84704 0.85077 1.90530 1.71105 1.51925 1.33208 1.41875 1.07453 1.50881 1.19741 1.19748 0.81458 1.35186 1.06508 0.87877 1.25272 1.00765 0.96699 0.95203 1.69617 1.36672 1.38570 1.09385 0.85800 0.82140 0.77973 0.78450 1.19187 1.20689 1.20729 1.45810 1.66149 1.14563 1.08809 1.20115 0.77304 0.87142 0.84474 1.90677 1.51015 1.15736 1.85122 1.22008 1.04937 0.99551 0.93026 1.21145 0.96805 0.95092 0.82337 0.87223 1.22288 0.94010 1.02039 1.03937 1.45771 1.20352 1.23173 1.24336 1.22810 0.92352 1.04684 0.98660 1.22299 1.00311 0.94715 1.00834 1.70293 1.05071 1.26742 1.19419 1.24844 1.01819 0.90244 0.93386 0.91897 0.91529 0.92270 0.90403 0.93810 0.82999 0.89580 0.93795 0.77471 0.91876 0.75752 0.88133 0.87528 0.92253 0.91942 0.88370 0.80952 0.81469 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.15 1.36 2.82 -67.93 -0.19 1.17 16 3 H 0.09 0.98 7.57 -51.93 -0.39 0.59 16 4 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 5 N -0.67 -9.41 5.85 -115.07 -0.67 -10.08 16 6 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 7 C 0.44 9.94 7.82 -10.99 -0.09 9.85 16 8 O -0.58 -15.34 15.78 5.55 0.09 -15.25 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 10 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 14 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 N -0.70 -6.52 4.80 -53.80 -0.26 -6.78 16 19 C 0.52 5.22 7.51 -10.98 -0.08 5.14 16 20 O -0.55 -6.88 13.63 5.56 0.08 -6.81 16 21 C -0.15 -1.21 5.17 -27.88 -0.14 -1.35 16 22 C 0.15 1.23 2.70 -67.93 -0.18 1.05 16 23 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 24 C -0.17 -1.24 8.98 37.16 0.33 -0.91 16 25 N -0.45 -4.20 2.62 -111.46 -0.29 -4.49 16 26 C -0.05 -0.50 11.54 -16.56 -0.19 -0.70 16 27 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 28 N -0.50 -6.19 11.25 -14.66 -0.16 -6.35 16 29 C 0.18 1.77 11.65 -90.37 -1.05 0.72 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.41 3.46 8.60 -40.82 -0.35 3.11 16 41 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.37 7.95 -51.93 -0.41 -0.04 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.87 5.95 -51.93 -0.31 0.56 16 46 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 48 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -33.89 404.57 -8.77 -42.65 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -7.53 Total: 15.71 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.75 Total: 6.87 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.72 Total: -65.04 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.16 Total: -22.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.89 -8.77 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699398179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.847 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds