Wall clock time and date at job start Tue Mar 31 2020 19:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47260 * 2 1 4 4 N 1.46504 * 109.47196 * 120.00759 * 2 1 3 5 5 C 1.36937 * 119.99563 * 274.99758 * 4 2 1 6 6 H 1.08001 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99644 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99931 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47125 * 60.00309 * 9 7 5 11 11 H 1.48498 * 109.47361 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47689 * 300.00301 * 9 7 5 13 13 C 1.53002 * 109.46866 * 240.00444 * 2 1 3 14 14 H 1.09004 * 110.88825 * 304.55103 * 13 2 1 15 15 C 1.55152 * 111.00383 * 68.47090 * 13 2 1 16 16 C 1.54339 * 103.01941 * 153.38114 * 15 13 2 17 17 N 1.47018 * 107.26496 * 338.14133 * 16 15 13 18 18 C 1.34775 * 125.64710 * 178.84985 * 17 16 15 19 19 O 1.21285 * 120.00287 * 179.68722 * 18 17 16 20 20 C 1.50701 * 120.00261 * 359.69069 * 18 17 16 21 21 C 1.53000 * 109.47322 * 180.02562 * 20 18 17 22 22 N 1.46498 * 109.47097 * 180.02562 * 21 20 18 23 23 N 1.40172 * 126.35057 * 270.00424 * 22 21 20 24 24 C 1.29401 * 108.14319 * 179.76159 * 23 22 21 25 25 N 1.37362 * 108.82796 * 0.37374 * 24 23 22 26 26 C 1.46491 * 125.83289 * 179.88171 * 25 24 23 27 27 C 1.34822 * 108.33218 * 359.61730 * 25 24 23 28 28 O 1.21810 * 126.29581 * 180.19253 * 27 25 24 29 29 C 1.47424 * 108.70318 * 358.58653 * 17 16 15 30 30 H 1.08997 * 109.47124 * 54.74148 * 1 2 3 31 31 H 1.08992 * 109.47209 * 174.74536 * 1 2 3 32 32 H 1.09003 * 109.46415 * 294.74682 * 1 2 3 33 33 H 0.96992 * 120.00121 * 94.99928 * 4 2 1 34 34 H 0.97004 * 119.99591 * 180.02562 * 8 7 5 35 35 H 1.09000 * 110.72312 * 271.93788 * 15 13 2 36 36 H 1.09001 * 110.72273 * 35.03667 * 15 13 2 37 37 H 1.09005 * 109.99097 * 218.66178 * 16 15 13 38 38 H 1.09003 * 109.77927 * 97.50091 * 16 15 13 39 39 H 1.08999 * 109.46992 * 59.99852 * 20 18 17 40 40 H 1.08997 * 109.47219 * 300.00181 * 20 18 17 41 41 H 1.08999 * 109.47213 * 59.99981 * 21 20 18 42 42 H 1.09000 * 109.47152 * 299.99699 * 21 20 18 43 43 H 1.07995 * 125.58665 * 180.22305 * 24 23 22 44 44 H 1.09005 * 109.47307 * 269.69079 * 26 25 24 45 45 H 1.08999 * 109.47317 * 29.68980 * 26 25 24 46 46 H 1.08999 * 109.47465 * 149.69046 * 26 25 24 47 47 H 1.08998 * 110.36756 * 143.19604 * 29 17 16 48 48 H 1.09001 * 110.36482 * 265.40766 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8928 1.0403 2.4242 7 6 2.6125 -0.6621 3.5089 8 7 2.9254 -1.9391 3.4496 9 14 2.7916 0.2699 5.1179 10 1 1.4694 0.8066 5.5289 11 1 3.3016 -0.6483 6.1676 12 1 3.7466 1.3924 4.9362 13 6 2.0400 -0.7212 -1.2493 14 1 1.6250 -1.7270 -1.3141 15 6 1.7242 0.0951 -2.5305 16 6 2.8293 -0.3537 -3.5099 17 7 3.9377 -0.8853 -2.7034 18 6 5.0853 -1.3997 -3.1877 19 8 5.9371 -1.8058 -2.4258 20 6 5.3104 -1.4704 -4.6762 21 6 6.6803 -2.0916 -4.9560 22 7 6.8993 -2.1597 -6.4029 23 7 6.5534 -3.2245 -7.2463 24 6 6.9009 -2.9120 -8.4530 25 7 7.4797 -1.6663 -8.4391 26 6 8.0095 -0.9538 -9.6043 27 6 7.4714 -1.2090 -7.1709 28 8 7.9017 -0.1354 -6.7886 29 6 3.5884 -0.7566 -1.2769 30 1 -0.3633 0.5932 -0.8391 31 1 -0.3633 -1.0233 -0.0941 32 1 -0.3632 0.4302 0.9334 33 1 2.2491 -1.6319 1.1524 34 1 3.2488 -2.3964 4.2416 35 1 0.7371 -0.1594 -2.9164 36 1 1.7958 1.1648 -2.3337 37 1 3.1736 0.4968 -4.0984 38 1 2.4442 -1.1317 -4.1692 39 1 5.2738 -0.4657 -5.0972 40 1 4.5336 -2.0840 -5.1324 41 1 6.7165 -3.0964 -4.5350 42 1 7.4574 -1.4783 -4.4998 43 1 6.7613 -3.5303 -9.3273 44 1 9.0630 -1.2022 -9.7340 45 1 7.4543 -1.2494 -10.4944 46 1 7.9057 0.1204 -9.4515 47 1 3.9583 -1.6154 -0.7168 48 1 3.9980 0.1671 -0.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699946183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:41 Heat of formation + Delta-G solvation = -0.612823 kcal Electronic energy + Delta-G solvation = -28971.524672 eV Core-core repulsion = 24870.025636 eV Total energy + Delta-G solvation = -4101.499035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.41216 -41.24554 -39.21402 -38.43225 -36.84299 -36.64100 -34.34383 -33.80225 -32.12678 -31.02466 -30.02146 -29.57527 -28.26403 -26.19999 -25.76751 -24.21235 -23.17685 -22.84755 -22.10694 -21.08434 -20.24717 -19.18551 -18.79504 -17.93928 -17.78121 -17.50236 -17.05830 -16.78373 -16.57034 -16.45076 -15.80734 -15.60491 -15.31079 -15.13597 -14.71087 -14.62616 -14.43024 -14.08691 -13.98524 -13.75746 -13.53874 -13.48745 -13.35817 -13.23473 -13.08369 -12.88085 -12.84480 -12.68932 -12.45274 -12.34843 -12.25831 -12.04539 -11.70607 -11.52655 -11.39687 -11.38283 -11.19844 -10.95512 -10.89384 -9.72236 -9.67814 -8.98458 -7.92251 -5.19672 0.69573 1.09412 1.45196 1.48344 1.48425 1.53754 1.54048 1.91210 2.28609 2.56455 3.34417 3.41676 3.44802 3.59896 3.67941 3.80902 3.85789 3.95835 4.12408 4.18724 4.26493 4.27487 4.32740 4.43703 4.54207 4.55477 4.62196 4.63323 4.65298 4.73359 4.83127 4.87321 4.89488 4.94611 4.99964 5.07308 5.10520 5.12621 5.22359 5.33997 5.41752 5.53336 5.66220 5.69801 6.29881 6.46356 6.63104 6.92489 7.01959 7.35585 8.13944 8.34770 9.31169 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002053 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.198648 B =13637.926240 C =14291.029901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.177 3.823 3 H 0.045 0.955 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.076 0.924 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.299 1.299 12 H -0.281 1.281 13 C -0.092 4.092 14 H 0.079 0.921 15 C -0.112 4.112 16 C 0.096 3.904 17 N -0.617 5.617 18 C 0.525 3.475 19 O -0.590 6.590 20 C -0.130 4.130 21 C 0.179 3.821 22 N -0.458 5.458 23 N -0.316 5.316 24 C 0.282 3.718 25 N -0.558 5.558 26 C 0.091 3.909 27 C 0.625 3.375 28 O -0.601 6.601 29 C 0.124 3.876 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.291 0.709 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 0.046 -35.727 35.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.094 0.906 7 C -0.273 4.273 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.208 1.208 13 C -0.112 4.112 14 H 0.097 0.903 15 C -0.150 4.150 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.314 3.686 19 O -0.471 6.471 20 C -0.171 4.171 21 C 0.057 3.943 22 N -0.277 5.277 23 N -0.137 5.137 24 C -0.016 4.016 25 N -0.285 5.285 26 C -0.049 4.049 27 C 0.324 3.676 28 O -0.478 6.478 29 C 0.001 3.999 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.306 0.694 44 H 0.101 0.899 45 H 0.153 0.847 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.156 0.028 -34.342 34.410 hybrid contribution 0.911 0.485 1.423 1.758 sum 3.066 0.513 -32.919 33.065 Atomic orbital electron populations 1.22264 0.96839 1.01120 1.00964 1.20447 0.93282 0.94700 0.84652 0.93704 1.42645 1.78486 1.10246 1.06394 1.19558 1.34431 0.94097 0.88312 0.90593 1.25535 1.03370 0.96879 1.01497 1.69818 1.52858 1.10256 1.29282 0.85274 0.77957 0.77236 0.79698 1.20144 1.22573 1.20779 1.22496 0.92179 1.00560 0.95945 0.90250 1.22712 0.99500 1.00540 0.92271 1.22396 0.85989 0.99893 0.94274 1.48687 1.17685 1.60429 1.08186 1.20596 0.80203 0.76525 0.91267 1.90737 1.44620 1.50336 1.61427 1.21835 0.99572 1.04850 0.90804 1.20980 0.96649 1.03546 0.73114 1.48970 1.56103 1.14634 1.07989 1.77076 1.24977 1.11339 1.00336 1.27190 0.90935 0.85074 0.98372 1.46183 1.55126 1.18498 1.08716 1.22181 1.01027 0.97154 0.84538 1.17149 0.82531 0.84812 0.83142 1.91057 1.56326 1.22959 1.77471 1.21964 0.96446 1.00074 0.81367 0.90137 0.93724 0.94896 0.79887 0.94316 0.86729 0.89628 0.89290 0.88706 0.87607 0.85738 0.88096 0.90095 0.69383 0.89887 0.84713 0.91023 0.94211 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.29 71.98 0.67 -4.20 16 2 C 0.18 6.58 2.42 44.99 0.11 6.69 16 3 H 0.04 1.70 8.00 -2.39 -0.02 1.68 16 4 N -0.74 -37.11 4.76 -322.92 -1.54 -38.64 16 5 C -0.23 -13.01 9.93 84.03 0.83 -12.17 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 8 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 9 Si 0.97 47.78 29.55 68.60 2.03 49.80 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 13 C -0.09 -2.77 2.62 -9.40 -0.02 -2.80 16 14 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 15 C -0.11 -2.14 5.78 31.79 0.18 -1.96 16 16 C 0.10 1.75 6.49 86.74 0.56 2.31 16 17 N -0.62 -17.92 3.33 -811.77 -2.70 -20.62 16 18 C 0.52 16.42 7.85 87.66 0.69 17.11 16 19 O -0.59 -24.47 16.24 -3.04 -0.05 -24.52 16 20 C -0.13 -2.86 5.22 29.85 0.16 -2.71 16 21 C 0.18 4.44 5.68 86.38 0.49 4.93 16 22 N -0.46 -10.17 3.63 -478.02 -1.73 -11.90 16 23 N -0.32 -5.10 12.53 -59.42 -0.74 -5.84 16 24 C 0.28 1.89 12.66 179.82 2.28 4.16 16 25 N -0.56 -6.65 3.14 -683.70 -2.15 -8.79 16 26 C 0.09 0.32 11.05 127.77 1.41 1.74 16 27 C 0.62 14.66 8.60 178.99 1.54 16.20 16 28 O -0.60 -19.30 17.71 -4.70 -0.08 -19.39 16 29 C 0.12 4.54 6.03 86.85 0.52 5.07 16 30 H 0.08 1.89 7.75 -2.39 -0.02 1.87 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.37 20.44 7.80 -92.71 -0.72 19.72 16 34 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.57 7.98 -2.39 -0.02 1.55 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 42 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16 43 H 0.29 -2.07 8.06 -2.91 -0.02 -2.09 16 44 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 47 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 48 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 Total: -1.00 -90.74 401.83 3.44 -87.30 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.23 Total: 23.93 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 9.89 Total: 30.07 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -8.58 Total: -147.19 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.13 Total: -43.91 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -90.74 3.44 -87.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.691 kcal (2) G-P(sol) polarization free energy of solvation -90.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds