Wall clock time and date at job start Tue Mar 31 2020 19:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 N 1.46497 * 109.47015 * 240.00267 * 2 1 3 5 5 C 1.36942 * 120.00133 * 84.99817 * 4 2 1 6 6 H 1.07998 * 119.99821 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99726 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00443 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47213 * 60.00148 * 9 7 5 11 11 H 1.48508 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47064 * 300.00117 * 9 7 5 13 13 C 1.53001 * 109.47509 * 119.99820 * 2 1 3 14 14 H 1.09000 * 110.91002 * 59.93914 * 13 2 1 15 15 C 1.55157 * 111.00462 * 296.04390 * 13 2 1 16 16 C 1.54326 * 102.94160 * 206.42007 * 15 13 2 17 17 N 1.47031 * 107.26947 * 22.19299 * 16 15 13 18 18 C 1.34773 * 125.64652 * 181.01189 * 17 16 15 19 19 O 1.21280 * 120.00038 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00258 * 0.02667 * 18 17 16 21 21 C 1.52993 * 109.46971 * 179.97438 * 20 18 17 22 22 N 1.46505 * 109.46975 * 179.97438 * 21 20 18 23 23 N 1.40165 * 126.34932 * 269.69181 * 22 21 20 24 24 C 1.29400 * 108.14053 * 179.87881 * 23 22 21 25 25 N 1.37355 * 108.82972 * 0.37827 * 24 23 22 26 26 C 1.46502 * 125.83709 * 179.73110 * 25 24 23 27 27 C 1.34816 * 108.33283 * 359.75640 * 25 24 23 28 28 O 1.21819 * 126.30032 * 179.97438 * 27 25 24 29 29 C 1.47425 * 108.70431 * 1.05827 * 17 16 15 30 30 H 1.09002 * 109.46573 * 185.08070 * 1 2 3 31 31 H 1.09001 * 109.46872 * 305.07242 * 1 2 3 32 32 H 1.08993 * 109.47458 * 65.07776 * 1 2 3 33 33 H 0.97002 * 119.99638 * 264.99563 * 4 2 1 34 34 H 0.97000 * 120.00151 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.71670 * 324.77945 * 15 13 2 36 36 H 1.08993 * 110.72193 * 88.05901 * 15 13 2 37 37 H 1.09002 * 109.88145 * 141.60427 * 16 15 13 38 38 H 1.08997 * 109.88572 * 262.77367 * 16 15 13 39 39 H 1.09004 * 109.46515 * 299.99900 * 20 18 17 40 40 H 1.08996 * 109.46818 * 59.99432 * 20 18 17 41 41 H 1.08999 * 109.47509 * 299.99920 * 21 20 18 42 42 H 1.09003 * 109.47232 * 60.00170 * 21 20 18 43 43 H 1.07999 * 125.58499 * 180.13755 * 24 23 22 44 44 H 1.08991 * 109.47292 * 270.03193 * 26 25 24 45 45 H 1.09000 * 109.46642 * 30.03039 * 26 25 24 46 46 H 1.09003 * 109.47125 * 150.02283 * 26 25 24 47 47 H 1.08996 * 110.36458 * 217.03660 * 29 17 16 48 48 H 1.08997 * 110.36670 * 94.70524 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5090 8 7 2.9253 -1.9386 -3.4500 9 14 2.7899 0.2702 -5.1183 10 1 3.7443 1.3933 -4.9372 11 1 3.2990 -0.6482 -6.1685 12 1 1.4670 0.8059 -5.5287 13 6 2.0401 -0.7212 1.2492 14 1 1.6889 -1.7528 1.2735 15 6 1.6259 0.0377 2.5376 16 6 2.7196 -0.3716 3.5465 17 7 3.8906 -0.8039 2.7695 18 6 5.0510 -1.2570 3.2839 19 8 5.9540 -1.5871 2.5448 20 6 5.2263 -1.3534 4.7776 21 6 6.6226 -1.8933 5.0933 22 7 6.7933 -1.9865 6.5454 23 7 7.2989 -0.9872 7.3883 24 6 7.2933 -1.4413 8.5999 25 7 6.8041 -2.7248 8.5901 26 6 6.6426 -3.5901 9.7612 27 6 6.4984 -3.0524 7.3186 28 8 6.0407 -4.1151 6.9378 29 6 3.5856 -0.6585 1.3345 30 1 -0.3632 -1.0237 0.0910 31 1 -0.3633 0.5905 0.8411 32 1 -0.3634 0.4330 -0.9319 33 1 2.2490 -1.6317 -1.1526 34 1 3.2486 -2.3959 -4.2420 35 1 1.6383 1.1149 2.3714 36 1 0.6441 -0.2897 2.8793 37 1 2.9842 0.4806 4.1725 38 1 2.3627 -1.1934 4.1672 39 1 5.1097 -0.3648 5.2216 40 1 4.4749 -2.0274 5.1888 41 1 6.7389 -2.8820 4.6493 42 1 7.3743 -1.2196 4.6820 43 1 7.6232 -0.9012 9.4750 44 1 7.5549 -4.1662 9.9158 45 1 6.4461 -2.9776 10.6411 46 1 5.8066 -4.2702 9.5979 47 1 4.0303 -1.4763 0.7674 48 1 3.9472 0.3011 0.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:45 Heat of formation + Delta-G solvation = 25.444791 kcal Electronic energy + Delta-G solvation = -28959.387159 eV Core-core repulsion = 24859.018067 eV Total energy + Delta-G solvation = -4100.369093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73715 -40.03597 -37.92455 -37.53527 -35.94843 -35.17271 -33.10793 -32.44421 -30.71428 -30.07726 -28.63387 -28.20391 -27.70408 -25.21241 -23.89678 -23.21081 -22.44352 -21.53399 -21.29381 -19.64123 -19.07812 -18.08249 -17.27682 -17.06265 -16.78010 -16.51838 -16.04624 -15.86148 -15.44171 -15.09357 -14.70023 -14.35110 -14.11979 -13.85844 -13.63744 -13.42003 -13.24730 -13.10729 -12.99946 -12.68398 -12.57403 -12.45992 -12.23075 -12.11845 -11.99137 -11.63484 -11.49443 -11.33065 -10.85479 -10.75208 -10.58234 -10.55743 -10.51750 -10.46807 -10.21505 -9.91671 -9.75183 -9.59311 -8.89865 -8.87496 -8.50616 -6.93325 -5.72260 -3.01541 1.40456 1.58492 2.35406 2.67906 2.71740 3.12792 3.46909 3.51287 3.52544 4.05561 4.30775 4.46232 4.57529 4.58951 4.63735 4.70202 4.73420 4.85472 4.97745 5.02081 5.02858 5.18227 5.33557 5.37200 5.48074 5.54434 5.58129 5.62564 5.67961 5.87428 5.90408 5.90762 5.94547 6.07797 6.17440 6.18270 6.33815 6.38377 6.41483 6.57802 6.65264 6.86823 7.09194 7.27253 7.61677 7.72744 7.72780 8.21217 8.45654 9.56844 10.13757 10.48151 11.50123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.002039 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.544064 B =13727.480116 C =14345.624125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.100 3.900 17 N -0.617 5.617 18 C 0.532 3.468 19 O -0.538 6.538 20 C -0.153 4.153 21 C 0.176 3.824 22 N -0.450 5.450 23 N -0.279 5.279 24 C 0.251 3.749 25 N -0.564 5.564 26 C 0.099 3.901 27 C 0.641 3.359 28 O -0.550 6.550 29 C 0.120 3.880 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 2.608 31.669 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.162 4.162 16 C -0.023 4.023 17 N -0.351 5.351 18 C 0.320 3.680 19 O -0.415 6.415 20 C -0.194 4.194 21 C 0.055 3.945 22 N -0.271 5.271 23 N -0.100 5.100 24 C -0.049 4.049 25 N -0.293 5.293 26 C -0.043 4.043 27 C 0.341 3.659 28 O -0.423 6.423 29 C -0.002 4.002 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.897 2.525 30.189 30.688 hybrid contribution -0.137 -0.357 -0.275 0.471 sum 4.759 2.168 29.915 30.368 Atomic orbital electron populations 1.22443 0.99118 1.00527 1.00330 1.20150 0.91892 0.95138 0.85373 0.93332 1.42413 1.78166 1.10725 1.05243 1.19147 1.36795 0.93786 0.87312 0.91285 1.24736 1.02125 0.95961 0.98044 1.69644 1.50645 1.08637 1.28983 0.86297 0.77688 0.78632 0.83708 1.21292 1.21754 1.21371 1.22683 0.93983 1.00458 0.95083 0.90090 1.22674 0.97590 1.01255 0.94726 1.22075 0.86287 0.99090 0.94887 1.48595 1.13602 1.63985 1.08946 1.19844 0.81297 0.77218 0.89691 1.90760 1.40083 1.49145 1.61525 1.21993 0.99214 1.04219 0.94011 1.21229 0.96691 1.04779 0.71795 1.49060 1.59126 1.11154 1.07762 1.77024 1.19459 1.14445 0.99053 1.25945 0.96879 0.84131 0.97904 1.45967 1.59130 1.15028 1.09202 1.21824 1.03819 0.94209 0.84494 1.16831 0.82338 0.85243 0.81521 1.91120 1.51321 1.23446 1.76434 1.22282 0.95398 1.03034 0.79457 0.93648 0.94446 0.92594 0.78257 0.93456 0.90318 0.90060 0.91652 0.91669 0.88277 0.88564 0.87630 0.87637 0.75325 0.90858 0.89301 0.89363 0.89704 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.23 37.16 0.34 -2.45 16 2 C 0.18 3.47 2.40 -67.93 -0.16 3.31 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -17.73 4.88 -53.43 -0.26 -17.99 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.36 5.50 -17.44 -0.10 -0.45 16 8 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 9 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.59 2.63 -88.47 -0.23 -1.83 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.41 5.56 -24.90 -0.14 -1.55 16 16 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16 17 N -0.62 -8.98 3.33 -170.51 -0.57 -9.54 16 18 C 0.53 8.05 7.85 -10.98 -0.09 7.96 16 19 O -0.54 -10.29 16.24 5.56 0.09 -10.20 16 20 C -0.15 -1.73 5.22 -27.88 -0.15 -1.87 16 21 C 0.18 2.08 5.68 -4.04 -0.02 2.06 16 22 N -0.45 -5.06 3.63 -65.12 -0.24 -5.30 16 23 N -0.28 -2.52 12.53 29.87 0.37 -2.14 16 24 C 0.25 1.31 12.66 -89.12 -1.13 0.18 16 25 N -0.56 -4.06 3.14 -130.11 -0.41 -4.47 16 26 C 0.10 0.32 11.05 59.85 0.66 0.99 16 27 C 0.64 7.65 8.60 -86.74 -0.75 6.90 16 28 O -0.55 -8.58 17.71 5.08 0.09 -8.49 16 29 C 0.12 2.07 6.14 -2.53 -0.02 2.06 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.51 7.60 -51.93 -0.39 0.12 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.23 -0.10 8.06 -52.49 -0.42 -0.52 16 44 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 46 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.08 1.74 8.04 -51.93 -0.42 1.33 16 48 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -37.73 401.76 -8.94 -46.67 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.84 Total: 5.88 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.94 Total: 9.63 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.37 Total: -67.17 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.73 -8.94 -46.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.117 kcal (2) G-P(sol) polarization free energy of solvation -37.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds