Wall clock time and date at job start Tue Mar 31 2020 19:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 N 1.46497 * 109.47015 * 240.00267 * 2 1 3 5 5 C 1.36942 * 120.00133 * 84.99817 * 4 2 1 6 6 H 1.07998 * 119.99821 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99726 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00443 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99624 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47213 * 60.00148 * 9 7 5 11 11 H 1.48508 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47064 * 300.00117 * 9 7 5 13 13 C 1.53001 * 109.47509 * 119.99820 * 2 1 3 14 14 H 1.09000 * 110.91002 * 59.93914 * 13 2 1 15 15 C 1.55157 * 111.00462 * 296.04390 * 13 2 1 16 16 C 1.54326 * 102.94160 * 206.42007 * 15 13 2 17 17 N 1.47031 * 107.26947 * 22.19299 * 16 15 13 18 18 C 1.34773 * 125.64652 * 181.01189 * 17 16 15 19 19 O 1.21280 * 120.00038 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00258 * 0.02667 * 18 17 16 21 21 C 1.52993 * 109.46971 * 179.97438 * 20 18 17 22 22 N 1.46505 * 109.46975 * 179.97438 * 21 20 18 23 23 N 1.40165 * 126.34932 * 269.69181 * 22 21 20 24 24 C 1.29400 * 108.14053 * 179.87881 * 23 22 21 25 25 N 1.37355 * 108.82972 * 0.37827 * 24 23 22 26 26 C 1.46502 * 125.83709 * 179.73110 * 25 24 23 27 27 C 1.34816 * 108.33283 * 359.75640 * 25 24 23 28 28 O 1.21819 * 126.30032 * 179.97438 * 27 25 24 29 29 C 1.47425 * 108.70431 * 1.05827 * 17 16 15 30 30 H 1.09002 * 109.46573 * 185.08070 * 1 2 3 31 31 H 1.09001 * 109.46872 * 305.07242 * 1 2 3 32 32 H 1.08993 * 109.47458 * 65.07776 * 1 2 3 33 33 H 0.97002 * 119.99638 * 264.99563 * 4 2 1 34 34 H 0.97000 * 120.00151 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.71670 * 324.77945 * 15 13 2 36 36 H 1.08993 * 110.72193 * 88.05901 * 15 13 2 37 37 H 1.09002 * 109.88145 * 141.60427 * 16 15 13 38 38 H 1.08997 * 109.88572 * 262.77367 * 16 15 13 39 39 H 1.09004 * 109.46515 * 299.99900 * 20 18 17 40 40 H 1.08996 * 109.46818 * 59.99432 * 20 18 17 41 41 H 1.08999 * 109.47509 * 299.99920 * 21 20 18 42 42 H 1.09003 * 109.47232 * 60.00170 * 21 20 18 43 43 H 1.07999 * 125.58499 * 180.13755 * 24 23 22 44 44 H 1.08991 * 109.47292 * 270.03193 * 26 25 24 45 45 H 1.09000 * 109.46642 * 30.03039 * 26 25 24 46 46 H 1.09003 * 109.47125 * 150.02283 * 26 25 24 47 47 H 1.08996 * 110.36458 * 217.03660 * 29 17 16 48 48 H 1.08997 * 110.36670 * 94.70524 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5090 8 7 2.9253 -1.9386 -3.4500 9 14 2.7899 0.2702 -5.1183 10 1 3.7443 1.3933 -4.9372 11 1 3.2990 -0.6482 -6.1685 12 1 1.4670 0.8059 -5.5287 13 6 2.0401 -0.7212 1.2492 14 1 1.6889 -1.7528 1.2735 15 6 1.6259 0.0377 2.5376 16 6 2.7196 -0.3716 3.5465 17 7 3.8906 -0.8039 2.7695 18 6 5.0510 -1.2570 3.2839 19 8 5.9540 -1.5871 2.5448 20 6 5.2263 -1.3534 4.7776 21 6 6.6226 -1.8933 5.0933 22 7 6.7933 -1.9865 6.5454 23 7 7.2989 -0.9872 7.3883 24 6 7.2933 -1.4413 8.5999 25 7 6.8041 -2.7248 8.5901 26 6 6.6426 -3.5901 9.7612 27 6 6.4984 -3.0524 7.3186 28 8 6.0407 -4.1151 6.9378 29 6 3.5856 -0.6585 1.3345 30 1 -0.3632 -1.0237 0.0910 31 1 -0.3633 0.5905 0.8411 32 1 -0.3634 0.4330 -0.9319 33 1 2.2490 -1.6317 -1.1526 34 1 3.2486 -2.3959 -4.2420 35 1 1.6383 1.1149 2.3714 36 1 0.6441 -0.2897 2.8793 37 1 2.9842 0.4806 4.1725 38 1 2.3627 -1.1934 4.1672 39 1 5.1097 -0.3648 5.2216 40 1 4.4749 -2.0274 5.1888 41 1 6.7389 -2.8820 4.6493 42 1 7.3743 -1.2196 4.6820 43 1 7.6232 -0.9012 9.4750 44 1 7.5549 -4.1662 9.9158 45 1 6.4461 -2.9776 10.6411 46 1 5.8066 -4.2702 9.5979 47 1 4.0303 -1.4763 0.7674 48 1 3.9472 0.3011 0.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699946184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:44 Heat of formation + Delta-G solvation = -0.692396 kcal Electronic energy + Delta-G solvation = -28960.520553 eV Core-core repulsion = 24859.018067 eV Total energy + Delta-G solvation = -4101.502486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41235 -41.24770 -39.21799 -38.43184 -36.84476 -36.64027 -34.34863 -33.80232 -32.12773 -31.02510 -30.01944 -29.57331 -28.26553 -26.20204 -25.77262 -24.19551 -23.17608 -22.87106 -22.10534 -21.08663 -20.23441 -19.18177 -18.79463 -17.95385 -17.78172 -17.51677 -17.06379 -16.73550 -16.55202 -16.47197 -15.89737 -15.54036 -15.35273 -15.04243 -14.75435 -14.62315 -14.40728 -14.09718 -14.00060 -13.77427 -13.53472 -13.48705 -13.35167 -13.23809 -13.10079 -12.88148 -12.83492 -12.67126 -12.45222 -12.37412 -12.25688 -12.02069 -11.71427 -11.53537 -11.40242 -11.37866 -11.19869 -10.95560 -10.89215 -9.72207 -9.67751 -8.98758 -7.92091 -5.19857 0.69516 1.09406 1.45477 1.48298 1.48808 1.53756 1.54515 1.91152 2.28700 2.56712 3.34339 3.41871 3.45054 3.59962 3.67983 3.80361 3.86349 3.95386 4.12265 4.17969 4.26477 4.27536 4.32568 4.43161 4.54297 4.56041 4.61220 4.63985 4.65657 4.73296 4.83082 4.87158 4.88385 4.94652 4.99226 5.07239 5.10451 5.12760 5.22090 5.33517 5.41731 5.53531 5.65835 5.69906 6.29810 6.46175 6.63127 6.92569 7.01835 7.35353 8.13666 8.34478 9.31418 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.002039 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.544064 B =13727.480116 C =14345.624125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.111 4.111 16 C 0.096 3.904 17 N -0.617 5.617 18 C 0.525 3.475 19 O -0.590 6.590 20 C -0.130 4.130 21 C 0.179 3.821 22 N -0.458 5.458 23 N -0.315 5.315 24 C 0.282 3.718 25 N -0.558 5.558 26 C 0.091 3.909 27 C 0.624 3.376 28 O -0.601 6.601 29 C 0.124 3.876 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.291 0.709 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.070 0.930 47 H 0.036 0.964 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 5.217 35.893 36.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.202 1.202 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.314 3.686 19 O -0.471 6.471 20 C -0.171 4.171 21 C 0.057 3.943 22 N -0.277 5.277 23 N -0.137 5.137 24 C -0.016 4.016 25 N -0.285 5.285 26 C -0.049 4.049 27 C 0.323 3.677 28 O -0.479 6.479 29 C 0.001 3.999 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.306 0.694 44 H 0.101 0.899 45 H 0.153 0.847 46 H 0.089 0.911 47 H 0.055 0.945 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.713 5.212 34.520 35.108 hybrid contribution 0.250 -1.126 -1.403 1.817 sum 3.963 4.086 33.117 33.603 Atomic orbital electron populations 1.22270 0.96907 1.01025 1.01025 1.20431 0.93229 0.94767 0.84545 0.93433 1.42666 1.78491 1.10220 1.06452 1.19571 1.34375 0.94138 0.88264 0.90449 1.25553 1.03377 0.96871 1.01569 1.69822 1.52908 1.10334 1.29293 0.85260 0.77981 0.77238 0.79596 1.20594 1.22665 1.20159 1.22500 0.92334 1.00463 0.96100 0.90905 1.22712 0.99154 1.01365 0.91712 1.22400 0.84388 1.01092 0.94685 1.48687 1.14692 1.63548 1.08053 1.20589 0.80686 0.76137 0.91158 1.90734 1.41970 1.51345 1.63060 1.21835 0.98903 1.05713 0.90621 1.20980 0.97150 1.03291 0.72863 1.48968 1.59308 1.11827 1.07584 1.77066 1.21993 1.14350 1.00254 1.27190 0.93226 0.82790 0.98362 1.46181 1.57912 1.16095 1.08330 1.22182 1.03753 0.94672 0.84297 1.17163 0.82594 0.84779 0.83162 1.91064 1.53713 1.25369 1.77705 1.21987 0.96643 1.00180 0.81095 0.93938 0.90030 0.94838 0.79997 0.94338 0.89028 0.87114 0.88431 0.89577 0.85588 0.87775 0.90223 0.87959 0.69362 0.89886 0.84691 0.91063 0.94501 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.23 71.98 0.66 -4.24 16 2 C 0.18 6.62 2.40 44.99 0.11 6.73 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.74 -37.27 4.88 -322.94 -1.58 -38.84 16 5 C -0.23 -12.96 9.93 84.03 0.83 -12.12 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 8 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 9 Si 0.97 47.66 29.55 68.60 2.03 49.69 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C -0.09 -2.88 2.63 -9.40 -0.02 -2.90 16 14 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.11 -2.12 5.56 31.78 0.18 -1.94 16 16 C 0.10 1.73 6.49 86.73 0.56 2.30 16 17 N -0.62 -17.76 3.33 -811.77 -2.70 -20.46 16 18 C 0.52 16.29 7.85 87.66 0.69 16.98 16 19 O -0.59 -24.27 16.24 -3.03 -0.05 -24.32 16 20 C -0.13 -2.84 5.22 29.85 0.16 -2.69 16 21 C 0.18 4.41 5.68 86.38 0.49 4.90 16 22 N -0.46 -10.11 3.63 -478.01 -1.73 -11.85 16 23 N -0.32 -4.99 12.53 -59.42 -0.74 -5.74 16 24 C 0.28 1.84 12.66 179.83 2.28 4.11 16 25 N -0.56 -6.66 3.14 -683.69 -2.15 -8.81 16 26 C 0.09 0.33 11.05 127.77 1.41 1.75 16 27 C 0.62 14.73 8.60 178.99 1.54 16.27 16 28 O -0.60 -19.54 17.71 -4.73 -0.08 -19.62 16 29 C 0.12 4.47 6.14 86.86 0.53 5.01 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.91 7.60 -2.39 -0.02 1.89 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.37 20.57 7.80 -92.71 -0.72 19.84 16 34 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 42 H 0.10 2.52 8.10 -2.39 -0.02 2.50 16 43 H 0.29 -2.14 8.06 -2.91 -0.02 -2.16 16 44 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.07 0.55 8.08 -2.39 -0.02 0.54 16 47 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 48 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -90.98 401.76 3.39 -87.59 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.23 Total: 24.29 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 9.88 Total: 29.78 kcal Atomic # 7 Polarization: -138.78 SS G_CDS: -8.62 Total: -147.40 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.13 Total: -43.94 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -90.98 3.39 -87.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.893 kcal (2) G-P(sol) polarization free energy of solvation -90.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds