Wall clock time and date at job start Tue Mar 31 2020 19:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46500 * 109.47150 * 240.00265 * 2 1 3 5 5 C 1.36933 * 120.00140 * 84.99831 * 4 2 1 6 6 H 1.07997 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00330 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00204 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46850 * 89.99783 * 9 7 5 11 11 H 1.48497 * 109.46976 * 209.99926 * 9 7 5 12 12 H 1.48494 * 109.46766 * 329.99840 * 9 7 5 13 13 C 1.53005 * 109.47252 * 120.00467 * 2 1 3 14 14 H 1.08998 * 110.88512 * 57.56776 * 13 2 1 15 15 C 1.55158 * 111.00453 * 181.45219 * 13 2 1 16 16 C 1.54320 * 102.94067 * 153.57687 * 15 13 2 17 17 N 1.47025 * 107.27198 * 337.80660 * 16 15 13 18 18 C 1.34776 * 125.64921 * 178.90699 * 17 16 15 19 19 O 1.21280 * 119.99937 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99932 * 0.02562 * 18 17 16 21 21 C 1.53005 * 109.47017 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.47066 * 180.02562 * 21 20 18 23 23 N 1.40172 * 126.34690 * 269.99995 * 22 21 20 24 24 C 1.29403 * 108.13750 * 179.75719 * 23 22 21 25 25 N 1.37357 * 108.82835 * 0.38362 * 24 23 22 26 26 C 1.46506 * 125.83267 * 179.87793 * 25 24 23 27 27 C 1.34815 * 108.33689 * 359.60777 * 25 24 23 28 28 O 1.21815 * 126.30582 * 180.19632 * 27 25 24 29 29 C 1.47424 * 108.70037 * 359.16650 * 17 16 15 30 30 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47053 * 300.00063 * 1 2 3 32 32 H 1.08998 * 109.47106 * 59.99491 * 1 2 3 33 33 H 0.97006 * 119.99976 * 265.00176 * 4 2 1 34 34 H 0.97000 * 119.99363 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.72261 * 35.21262 * 15 13 2 36 36 H 1.09005 * 110.87239 * 272.00842 * 15 13 2 37 37 H 1.09004 * 109.88266 * 218.38863 * 16 15 13 38 38 H 1.09005 * 109.88513 * 97.22450 * 16 15 13 39 39 H 1.08997 * 109.47188 * 59.99894 * 20 18 17 40 40 H 1.08998 * 109.47097 * 299.99818 * 20 18 17 41 41 H 1.08997 * 109.47363 * 59.99835 * 21 20 18 42 42 H 1.08998 * 109.46903 * 299.99771 * 21 20 18 43 43 H 1.08000 * 125.58180 * 180.21939 * 24 23 22 44 44 H 1.09001 * 109.47060 * 269.69069 * 26 25 24 45 45 H 1.09004 * 109.47073 * 29.68557 * 26 25 24 46 46 H 1.09000 * 109.47212 * 149.68640 * 26 25 24 47 47 H 1.09001 * 110.36436 * 142.74141 * 29 17 16 48 48 H 1.09002 * 110.36733 * 265.05915 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8926 1.0405 -2.4241 7 6 2.6113 -0.6618 -3.5093 8 7 2.9243 -1.9390 -3.4502 9 14 2.7903 0.2703 -5.1183 10 1 4.1530 0.8544 -5.2028 11 1 2.5793 -0.6607 -6.2558 12 1 1.7810 1.3580 -5.1750 13 6 2.0400 -0.7214 1.2492 14 1 1.6546 -1.7400 1.2943 15 6 3.5906 -0.7104 1.3036 16 6 3.8841 -0.8153 2.8150 17 7 2.6859 -0.3457 3.5260 18 6 2.5338 -0.3009 4.8644 19 8 1.4968 0.1066 5.3435 20 6 3.6521 -0.7572 5.7655 21 6 3.2243 -0.6048 7.2266 22 7 4.3117 -1.0478 8.1027 23 7 4.5112 -2.3481 8.5868 24 6 5.5759 -2.3452 9.3222 25 7 6.0916 -1.0724 9.3507 26 6 7.2926 -0.6496 10.0753 27 6 5.3070 -0.2799 8.5931 28 8 5.4667 0.9105 8.3894 29 6 1.6762 0.0622 2.5323 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.2470 -2.3963 -4.2425 35 1 3.9842 0.2216 0.8981 36 1 4.0040 -1.5664 0.7702 37 1 4.7373 -0.1872 3.0714 38 1 4.0909 -1.8518 3.0815 39 1 4.5383 -0.1501 5.5808 40 1 3.8795 -1.8035 5.5612 41 1 2.3382 -1.2122 7.4110 42 1 2.9967 0.4413 7.4312 43 1 5.9897 -3.2025 9.8323 44 1 7.0164 -0.3258 11.0788 45 1 7.9896 -1.4850 10.1422 46 1 7.7655 0.1765 9.5442 47 1 0.6772 -0.2099 2.8731 48 1 1.7362 1.1350 2.3489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:48 Heat of formation + Delta-G solvation = 23.967653 kcal Electronic energy + Delta-G solvation = -28822.518063 eV Core-core repulsion = 24722.084917 eV Total energy + Delta-G solvation = -4100.433146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.76663 -40.13539 -37.97254 -37.57098 -35.99213 -35.21577 -33.16524 -32.42161 -30.75638 -30.06225 -29.21310 -27.96126 -27.39514 -25.37364 -24.17030 -23.04990 -22.45554 -21.49834 -21.32923 -19.64558 -19.19040 -18.12962 -17.30528 -17.11480 -16.89593 -16.49085 -16.23025 -15.91934 -15.52922 -15.05490 -14.68321 -14.39469 -14.13969 -13.86228 -13.51107 -13.46114 -13.25978 -13.12591 -13.08810 -12.70786 -12.55360 -12.45700 -12.41124 -12.24961 -12.07878 -11.72181 -11.55531 -11.22020 -10.89740 -10.71485 -10.59938 -10.58277 -10.51288 -10.39314 -10.21633 -9.97912 -9.82757 -9.64221 -8.93799 -8.91892 -8.62829 -6.97665 -5.78298 -3.06536 1.37117 1.56077 2.31913 2.55120 2.68160 3.03254 3.42277 3.48181 3.49291 4.02540 4.28583 4.41787 4.53526 4.54401 4.58747 4.71763 4.80533 4.83535 4.95423 5.00770 5.11292 5.14374 5.30386 5.34381 5.46034 5.52472 5.53080 5.57425 5.69574 5.83124 5.87274 5.90882 5.98243 6.07047 6.14330 6.20812 6.23273 6.38788 6.44422 6.59622 6.63915 6.86821 7.09609 7.24112 7.49729 7.69132 7.69371 8.07200 8.40350 9.51858 10.08864 10.43967 11.44314 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.001901 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.466524 B =14727.080601 C =15271.071909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.115 4.115 16 C 0.096 3.904 17 N -0.614 5.614 18 C 0.535 3.465 19 O -0.546 6.546 20 C -0.155 4.155 21 C 0.178 3.822 22 N -0.451 5.451 23 N -0.279 5.279 24 C 0.252 3.748 25 N -0.563 5.563 26 C 0.098 3.902 27 C 0.642 3.358 28 O -0.551 6.551 29 C 0.114 3.886 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -2.628 28.342 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.027 4.027 17 N -0.347 5.347 18 C 0.323 3.677 19 O -0.425 6.425 20 C -0.196 4.196 21 C 0.056 3.944 22 N -0.272 5.272 23 N -0.100 5.100 24 C -0.047 4.047 25 N -0.293 5.293 26 C -0.044 4.044 27 C 0.341 3.659 28 O -0.424 6.424 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.247 0.753 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.284 -1.942 27.966 28.964 hybrid contribution 0.958 0.361 -0.722 1.253 sum 8.243 -1.582 27.244 28.507 Atomic orbital electron populations 1.22485 0.99197 1.00970 1.00101 1.20131 0.91823 0.95156 0.85421 0.93279 1.42360 1.78158 1.10644 1.05127 1.19221 1.36314 0.93832 0.87287 0.91229 1.24722 1.02307 0.95966 0.98001 1.69658 1.51060 1.08608 1.28844 0.86214 0.77755 0.78605 0.83774 1.21794 1.21854 1.20819 1.22630 0.95347 1.00099 0.94165 0.90128 1.22565 0.96234 1.04312 0.92191 1.22215 0.87409 0.99183 0.93871 1.48559 1.17623 1.63734 1.04814 1.19860 0.88329 0.78265 0.81246 1.90718 1.29571 1.47761 1.74436 1.22006 0.98858 1.04389 0.94359 1.21201 0.85701 1.02174 0.85276 1.49042 1.26291 1.05602 1.46232 1.77037 1.16838 1.01438 1.14675 1.25962 0.91729 0.89130 0.97897 1.45967 1.27312 1.09587 1.46417 1.21834 0.83692 1.02342 0.96498 1.16820 0.81753 0.85738 0.81574 1.91112 1.75036 1.10480 1.65802 1.22289 0.92134 0.99220 0.87223 0.93445 0.94356 0.92724 0.78296 0.93579 0.90152 0.89406 0.91577 0.91515 0.88430 0.88074 0.87696 0.87754 0.75282 0.90847 0.89250 0.89356 0.90402 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.34 37.16 0.35 -2.62 16 2 C 0.18 3.46 2.41 -67.93 -0.16 3.30 16 3 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 4 N -0.72 -17.05 4.82 -53.43 -0.26 -17.31 16 5 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 9 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C -0.10 -1.58 2.61 -88.59 -0.23 -1.81 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.65 6.13 -24.90 -0.15 -1.81 16 16 C 0.10 1.13 6.49 -3.06 -0.02 1.11 16 17 N -0.61 -8.24 3.33 -170.66 -0.57 -8.81 16 18 C 0.54 7.29 7.85 -10.99 -0.09 7.20 16 19 O -0.55 -9.07 16.24 5.56 0.09 -8.98 16 20 C -0.16 -1.64 5.22 -27.88 -0.15 -1.79 16 21 C 0.18 1.93 5.68 -4.04 -0.02 1.90 16 22 N -0.45 -4.83 3.63 -65.12 -0.24 -5.06 16 23 N -0.28 -2.43 12.53 29.87 0.37 -2.06 16 24 C 0.25 1.27 12.66 -89.12 -1.13 0.14 16 25 N -0.56 -3.92 3.14 -130.10 -0.41 -4.33 16 26 C 0.10 0.31 11.05 59.85 0.66 0.97 16 27 C 0.64 7.36 8.60 -86.74 -0.75 6.62 16 28 O -0.55 -8.28 17.71 5.09 0.09 -8.19 16 29 C 0.11 1.64 5.55 -2.65 -0.01 1.62 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.58 7.46 -51.93 -0.39 0.19 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.10 1.24 8.06 -51.93 -0.42 0.82 16 43 H 0.23 -0.12 8.06 -52.49 -0.42 -0.54 16 44 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 46 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 47 H 0.08 1.15 7.97 -51.93 -0.41 0.74 16 48 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -36.05 401.50 -8.94 -44.98 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.82 Total: 5.45 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.95 Total: 7.90 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.37 Total: -64.26 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.05 -8.94 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.952 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds