Wall clock time and date at job start Tue Mar 31 2020 19:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 N 1.46500 * 109.47150 * 240.00265 * 2 1 3 5 5 C 1.36933 * 120.00140 * 84.99831 * 4 2 1 6 6 H 1.07997 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00330 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00204 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46850 * 89.99783 * 9 7 5 11 11 H 1.48497 * 109.46976 * 209.99926 * 9 7 5 12 12 H 1.48494 * 109.46766 * 329.99840 * 9 7 5 13 13 C 1.53005 * 109.47252 * 120.00467 * 2 1 3 14 14 H 1.08998 * 110.88512 * 57.56776 * 13 2 1 15 15 C 1.55158 * 111.00453 * 181.45219 * 13 2 1 16 16 C 1.54320 * 102.94067 * 153.57687 * 15 13 2 17 17 N 1.47025 * 107.27198 * 337.80660 * 16 15 13 18 18 C 1.34776 * 125.64921 * 178.90699 * 17 16 15 19 19 O 1.21280 * 119.99937 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99932 * 0.02562 * 18 17 16 21 21 C 1.53005 * 109.47017 * 180.02562 * 20 18 17 22 22 N 1.46504 * 109.47066 * 180.02562 * 21 20 18 23 23 N 1.40172 * 126.34690 * 269.99995 * 22 21 20 24 24 C 1.29403 * 108.13750 * 179.75719 * 23 22 21 25 25 N 1.37357 * 108.82835 * 0.38362 * 24 23 22 26 26 C 1.46506 * 125.83267 * 179.87793 * 25 24 23 27 27 C 1.34815 * 108.33689 * 359.60777 * 25 24 23 28 28 O 1.21815 * 126.30582 * 180.19632 * 27 25 24 29 29 C 1.47424 * 108.70037 * 359.16650 * 17 16 15 30 30 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47053 * 300.00063 * 1 2 3 32 32 H 1.08998 * 109.47106 * 59.99491 * 1 2 3 33 33 H 0.97006 * 119.99976 * 265.00176 * 4 2 1 34 34 H 0.97000 * 119.99363 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.72261 * 35.21262 * 15 13 2 36 36 H 1.09005 * 110.87239 * 272.00842 * 15 13 2 37 37 H 1.09004 * 109.88266 * 218.38863 * 16 15 13 38 38 H 1.09005 * 109.88513 * 97.22450 * 16 15 13 39 39 H 1.08997 * 109.47188 * 59.99894 * 20 18 17 40 40 H 1.08998 * 109.47097 * 299.99818 * 20 18 17 41 41 H 1.08997 * 109.47363 * 59.99835 * 21 20 18 42 42 H 1.08998 * 109.46903 * 299.99771 * 21 20 18 43 43 H 1.08000 * 125.58180 * 180.21939 * 24 23 22 44 44 H 1.09001 * 109.47060 * 269.69069 * 26 25 24 45 45 H 1.09004 * 109.47073 * 29.68557 * 26 25 24 46 46 H 1.09000 * 109.47212 * 149.68640 * 26 25 24 47 47 H 1.09001 * 110.36436 * 142.74141 * 29 17 16 48 48 H 1.09002 * 110.36733 * 265.05915 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8926 1.0405 -2.4241 7 6 2.6113 -0.6618 -3.5093 8 7 2.9243 -1.9390 -3.4502 9 14 2.7903 0.2703 -5.1183 10 1 4.1530 0.8544 -5.2028 11 1 2.5793 -0.6607 -6.2558 12 1 1.7810 1.3580 -5.1750 13 6 2.0400 -0.7214 1.2492 14 1 1.6546 -1.7400 1.2943 15 6 3.5906 -0.7104 1.3036 16 6 3.8841 -0.8153 2.8150 17 7 2.6859 -0.3457 3.5260 18 6 2.5338 -0.3009 4.8644 19 8 1.4968 0.1066 5.3435 20 6 3.6521 -0.7572 5.7655 21 6 3.2243 -0.6048 7.2266 22 7 4.3117 -1.0478 8.1027 23 7 4.5112 -2.3481 8.5868 24 6 5.5759 -2.3452 9.3222 25 7 6.0916 -1.0724 9.3507 26 6 7.2926 -0.6496 10.0753 27 6 5.3070 -0.2799 8.5931 28 8 5.4667 0.9105 8.3894 29 6 1.6762 0.0622 2.5323 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.2470 -2.3963 -4.2425 35 1 3.9842 0.2216 0.8981 36 1 4.0040 -1.5664 0.7702 37 1 4.7373 -0.1872 3.0714 38 1 4.0909 -1.8518 3.0815 39 1 4.5383 -0.1501 5.5808 40 1 3.8795 -1.8035 5.5612 41 1 2.3382 -1.2122 7.4110 42 1 2.9967 0.4413 7.4312 43 1 5.9897 -3.2025 9.8323 44 1 7.0164 -0.3258 11.0788 45 1 7.9896 -1.4850 10.1422 46 1 7.7655 0.1765 9.5442 47 1 0.6772 -0.2099 2.8731 48 1 1.7362 1.1350 2.3489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699946185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:47 Heat of formation + Delta-G solvation = 0.628742 kcal Electronic energy + Delta-G solvation = -28823.530114 eV Core-core repulsion = 24722.084917 eV Total energy + Delta-G solvation = -4101.445197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.40388 -41.26101 -39.21520 -38.42190 -36.84795 -36.62340 -34.31357 -33.77938 -32.05091 -30.97421 -30.71507 -28.94839 -28.22671 -26.46921 -25.69779 -24.18432 -23.17742 -22.81253 -22.10561 -21.09092 -20.24444 -19.16943 -18.83876 -17.93721 -17.78660 -17.55880 -17.07191 -16.79329 -16.52870 -16.39232 -15.80168 -15.59393 -15.24322 -15.05771 -14.66004 -14.63555 -14.44242 -14.08774 -13.91844 -13.85228 -13.64418 -13.49290 -13.40331 -13.22438 -13.17914 -12.90109 -12.87414 -12.76787 -12.43658 -12.30485 -12.17442 -11.99928 -11.66916 -11.54742 -11.38963 -11.38011 -11.20251 -10.95171 -10.88603 -9.73198 -9.66714 -8.96731 -7.90570 -5.17196 0.71632 1.09411 1.47976 1.49211 1.49464 1.54501 1.57612 1.89821 2.28807 2.58355 3.32727 3.43234 3.45997 3.62887 3.65668 3.77194 3.85680 3.96017 4.12238 4.23059 4.26686 4.28231 4.30617 4.38780 4.51274 4.54204 4.59884 4.64069 4.65681 4.70527 4.76023 4.82921 4.88493 4.95394 4.98683 5.05536 5.09181 5.15148 5.20036 5.32259 5.38443 5.55824 5.61125 5.69819 6.31785 6.42581 6.63463 6.92910 6.99558 7.38944 8.14792 8.38843 9.32611 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.001901 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.466524 B =14727.080601 C =15271.071909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.045 0.955 4 N -0.729 5.729 5 C -0.231 4.231 6 H 0.072 0.928 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.274 1.274 13 C -0.093 4.093 14 H 0.079 0.921 15 C -0.112 4.112 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.534 3.466 19 O -0.580 6.580 20 C -0.138 4.138 21 C 0.181 3.819 22 N -0.458 5.458 23 N -0.315 5.315 24 C 0.281 3.719 25 N -0.559 5.559 26 C 0.091 3.909 27 C 0.624 3.376 28 O -0.600 6.600 29 C 0.119 3.881 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.289 0.711 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -3.571 30.301 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.063 0.937 4 N -0.369 5.369 5 C -0.363 4.363 6 H 0.090 0.910 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.796 3.204 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.199 1.199 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.150 4.150 16 C -0.019 4.019 17 N -0.348 5.348 18 C 0.324 3.676 19 O -0.461 6.461 20 C -0.179 4.179 21 C 0.059 3.941 22 N -0.277 5.277 23 N -0.137 5.137 24 C -0.017 4.017 25 N -0.286 5.286 26 C -0.049 4.049 27 C 0.323 3.677 28 O -0.478 6.478 29 C -0.004 4.004 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.305 0.695 44 H 0.103 0.897 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.654 -2.889 29.975 31.333 hybrid contribution 0.555 0.643 -1.193 1.465 sum 9.209 -2.245 28.782 30.303 Atomic orbital electron populations 1.22356 0.98108 1.00878 1.00576 1.20298 0.92421 0.94851 0.85130 0.93683 1.42491 1.78315 1.10278 1.05866 1.19548 1.34420 0.94005 0.88334 0.90995 1.25435 1.03363 0.96836 1.01050 1.69798 1.52844 1.09955 1.29194 0.85252 0.77752 0.77439 0.80005 1.21559 1.22535 1.19874 1.22414 0.96181 0.99613 0.93074 0.90272 1.22477 0.95162 1.03262 0.94137 1.22242 0.87149 1.00909 0.91577 1.48602 1.17806 1.63577 1.04806 1.20325 0.88521 0.77509 0.81285 1.90702 1.31131 1.49267 1.74960 1.21882 0.97442 1.05221 0.93349 1.21018 0.86191 1.01201 0.85711 1.49007 1.25931 1.06599 1.46182 1.77073 1.19299 1.00119 1.17168 1.27163 0.89742 0.89400 0.95394 1.46188 1.27417 1.09703 1.45291 1.22175 0.82914 1.03719 0.96103 1.17154 0.82547 0.85591 0.82383 1.91056 1.76357 1.12642 1.67713 1.22132 0.92415 0.98952 0.86863 0.93805 0.91554 0.94514 0.79392 0.94217 0.91351 0.90331 0.89767 0.89342 0.88122 0.86290 0.87643 0.89657 0.69548 0.89735 0.84907 0.91092 0.90681 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.34 71.98 0.67 -4.87 16 2 C 0.18 6.75 2.41 44.99 0.11 6.86 16 3 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 4 N -0.73 -34.72 4.82 -322.94 -1.56 -36.27 16 5 C -0.23 -12.40 9.93 84.04 0.83 -11.56 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 8 N -0.97 -57.64 13.06 21.65 0.28 -57.36 16 9 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 C -0.09 -2.81 2.61 -9.48 -0.02 -2.83 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.11 -3.14 6.13 31.78 0.19 -2.94 16 16 C 0.10 2.23 6.49 86.73 0.56 2.79 16 17 N -0.62 -15.69 3.33 -812.23 -2.70 -18.39 16 18 C 0.53 14.10 7.85 87.66 0.69 14.79 16 19 O -0.58 -19.24 16.24 -3.03 -0.05 -19.29 16 20 C -0.14 -2.78 5.22 29.85 0.16 -2.63 16 21 C 0.18 3.93 5.68 86.38 0.49 4.42 16 22 N -0.46 -9.49 3.63 -478.01 -1.73 -11.23 16 23 N -0.32 -4.81 12.53 -59.42 -0.74 -5.56 16 24 C 0.28 1.80 12.66 179.82 2.28 4.08 16 25 N -0.56 -6.47 3.14 -683.66 -2.15 -8.62 16 26 C 0.09 0.32 11.05 127.77 1.41 1.74 16 27 C 0.62 14.08 8.60 178.99 1.54 15.62 16 28 O -0.60 -18.62 17.71 -4.72 -0.08 -18.70 16 29 C 0.12 3.32 5.55 86.78 0.48 3.80 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.92 7.46 -2.39 -0.02 1.90 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.37 19.10 7.80 -92.70 -0.72 18.37 16 34 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 36 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 42 H 0.09 2.14 8.06 -2.39 -0.02 2.13 16 43 H 0.29 -2.04 8.06 -2.91 -0.02 -2.06 16 44 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.13 -0.67 8.14 -2.38 -0.02 -0.69 16 46 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 47 H 0.07 2.15 7.97 -2.39 -0.02 2.13 16 48 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 Total: -1.00 -81.04 401.50 3.39 -77.65 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.23 Total: 24.53 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 9.86 Total: 25.54 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -8.60 Total: -137.42 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.13 Total: -37.99 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -81.04 3.39 -77.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.278 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds