Wall clock time and date at job start Tue Mar 31 2020 19:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47166 * 89.99808 * 9 7 5 11 11 H 1.48501 * 109.47423 * 210.00188 * 9 7 5 12 12 H 1.48508 * 109.46891 * 329.99990 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34779 * 125.64795 * 181.12907 * 17 16 15 19 19 O 1.21278 * 119.99612 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00001 * 359.95901 * 18 17 16 21 21 C 1.53009 * 109.46866 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47137 * 180.02562 * 21 20 18 23 23 N 1.40175 * 126.35007 * 269.68887 * 22 21 20 24 24 C 1.29395 * 108.13780 * 179.87824 * 23 22 21 25 25 N 1.37361 * 108.83306 * 0.38488 * 24 23 22 26 26 C 1.46498 * 125.83452 * 179.73249 * 25 24 23 27 27 C 1.34813 * 108.33476 * 359.75138 * 25 24 23 28 28 O 1.21815 * 126.30232 * 180.02562 * 27 25 24 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09000 * 109.90660 * 141.57633 * 16 15 13 39 39 H 1.08996 * 109.47295 * 299.99485 * 20 18 17 40 40 H 1.08996 * 109.47179 * 60.00598 * 20 18 17 41 41 H 1.09004 * 109.47023 * 300.00403 * 21 20 18 42 42 H 1.09000 * 109.46541 * 59.99853 * 21 20 18 43 43 H 1.08005 * 125.58416 * 180.13915 * 24 23 22 44 44 H 1.08998 * 109.47427 * 270.02646 * 26 25 24 45 45 H 1.09010 * 109.47055 * 30.02210 * 26 25 24 46 46 H 1.09001 * 109.47261 * 150.01743 * 26 25 24 47 47 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 48 48 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3226 5.9139 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4212 -0.3478 -4.8832 19 8 1.3549 0.0036 -5.3419 20 6 3.5357 -0.7701 -5.8054 21 6 3.0640 -0.6648 -7.2571 22 7 4.1472 -1.0760 -8.1536 23 7 5.1272 -0.2420 -8.7096 24 6 5.9066 -0.9696 -9.4427 25 7 5.4687 -2.2709 -9.3995 26 6 6.0770 -3.4043 -10.1006 27 6 4.3831 -2.3267 -8.6020 28 8 3.7349 -3.3229 -8.3350 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6625 -0.1012 -3.1516 39 1 4.3977 -0.1201 -5.6551 40 1 3.8157 -1.8010 -5.5887 41 1 2.2021 -1.3151 -7.4072 42 1 2.7836 0.3659 -7.4741 43 1 6.7593 -0.6117 -10.0006 44 1 5.6227 -3.5083 -11.0859 45 1 7.1476 -3.2312 -10.2106 46 1 5.9135 -4.3165 -9.5269 47 1 0.6144 -0.2928 -2.8452 48 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699946186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:51 Heat of formation + Delta-G solvation = 24.121607 kcal Electronic energy + Delta-G solvation = -28825.482568 eV Core-core repulsion = 24725.056098 eV Total energy + Delta-G solvation = -4100.426470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.76530 -40.13394 -37.96845 -37.56797 -35.99116 -35.21472 -33.16600 -32.42357 -30.75825 -30.06770 -29.21069 -27.95655 -27.36957 -25.37783 -24.17786 -23.05837 -22.45981 -21.48905 -21.33185 -19.63793 -19.19506 -18.12950 -17.30481 -17.11091 -16.87596 -16.57413 -16.15737 -15.89696 -15.52691 -15.13792 -14.66057 -14.35409 -14.14208 -13.87452 -13.50140 -13.46539 -13.25471 -13.11465 -13.08041 -12.70955 -12.57627 -12.47645 -12.39643 -12.23572 -12.08842 -11.72755 -11.55628 -11.22136 -10.89602 -10.71551 -10.60411 -10.57386 -10.51121 -10.39105 -10.21835 -9.97779 -9.83000 -9.64195 -8.93539 -8.91666 -8.63101 -6.97459 -5.77967 -3.06346 1.37165 1.55807 2.32291 2.54928 2.68142 3.03164 3.42414 3.47984 3.49125 4.02623 4.28357 4.41591 4.53701 4.54246 4.58815 4.72169 4.79719 4.83138 4.95544 5.01303 5.10654 5.14506 5.30677 5.34465 5.46097 5.51092 5.53310 5.57855 5.69344 5.83056 5.87260 5.90897 5.98020 6.06975 6.14362 6.20925 6.22538 6.37916 6.45240 6.58360 6.64257 6.87013 7.09852 7.24073 7.49530 7.69262 7.69513 8.07064 8.40578 9.52007 10.09182 10.44189 11.44644 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.001899 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.014784 B =14742.670388 C =15268.906218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.096 3.904 17 N -0.614 5.614 18 C 0.535 3.465 19 O -0.546 6.546 20 C -0.155 4.155 21 C 0.177 3.823 22 N -0.451 5.451 23 N -0.280 5.280 24 C 0.252 3.748 25 N -0.563 5.563 26 C 0.098 3.902 27 C 0.642 3.358 28 O -0.550 6.550 29 C 0.114 3.886 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 0.880 -28.706 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.027 4.027 17 N -0.347 5.347 18 C 0.323 3.677 19 O -0.425 6.425 20 C -0.196 4.196 21 C 0.056 3.944 22 N -0.272 5.272 23 N -0.100 5.100 24 C -0.047 4.047 25 N -0.293 5.293 26 C -0.044 4.044 27 C 0.341 3.659 28 O -0.423 6.423 29 C -0.009 4.009 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.248 1.419 -28.304 29.515 hybrid contribution 0.565 -0.625 0.739 1.121 sum 8.813 0.794 -27.565 28.951 Atomic orbital electron populations 1.22493 0.99221 1.00995 1.00092 1.20130 0.91812 0.95135 0.85422 0.93276 1.42367 1.78159 1.10657 1.05122 1.19218 1.36301 0.93853 0.87301 0.91225 1.24724 1.02295 0.95983 0.98003 1.69658 1.51014 1.08648 1.28836 0.86217 0.77272 0.78786 0.84066 1.21800 1.21858 1.20811 1.22674 0.95125 1.00357 0.94112 0.90072 1.22583 0.96475 1.04159 0.92132 1.22216 0.86477 0.99793 0.94176 1.48559 1.15804 1.65454 1.04930 1.19860 0.88660 0.77856 0.81322 1.90717 1.27490 1.48865 1.75398 1.22005 0.98834 1.04526 0.94239 1.21199 0.84836 1.03509 0.84809 1.49038 1.27708 1.05516 1.44925 1.77026 1.00968 1.18819 1.13230 1.25956 0.99793 0.80637 0.98328 1.45965 1.28204 1.09884 1.45226 1.21834 0.98324 0.87198 0.97018 1.16825 0.82508 0.84934 0.81628 1.91117 1.53514 1.33022 1.64686 1.22330 0.92329 0.99439 0.86764 0.94346 0.93441 0.92723 0.78295 0.93568 0.90183 0.89408 0.91543 0.91545 0.88110 0.88395 0.87749 0.87717 0.75294 0.90854 0.89255 0.89328 0.90413 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.31 37.16 0.35 -2.64 16 2 C 0.19 3.47 2.40 -67.93 -0.16 3.31 16 3 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 4 N -0.72 -17.13 4.90 -53.43 -0.26 -17.39 16 5 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 9 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C -0.10 -1.60 2.63 -88.47 -0.23 -1.83 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.65 6.21 -24.87 -0.15 -1.80 16 16 C 0.10 1.13 6.49 -3.04 -0.02 1.11 16 17 N -0.61 -8.23 3.33 -170.49 -0.57 -8.79 16 18 C 0.54 7.28 7.85 -10.99 -0.09 7.19 16 19 O -0.55 -9.06 16.24 5.56 0.09 -8.97 16 20 C -0.16 -1.64 5.22 -27.88 -0.15 -1.78 16 21 C 0.18 1.92 5.68 -4.04 -0.02 1.90 16 22 N -0.45 -4.82 3.63 -65.12 -0.24 -5.06 16 23 N -0.28 -2.41 12.53 29.87 0.37 -2.04 16 24 C 0.25 1.26 12.66 -89.12 -1.13 0.13 16 25 N -0.56 -3.93 3.14 -130.10 -0.41 -4.33 16 26 C 0.10 0.31 11.05 59.85 0.66 0.97 16 27 C 0.64 7.40 8.60 -86.73 -0.75 6.65 16 28 O -0.55 -8.34 17.71 5.09 0.09 -8.25 16 29 C 0.11 1.64 5.42 -2.53 -0.01 1.62 16 30 H 0.04 0.58 7.33 -51.93 -0.38 0.20 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.38 9.72 7.80 -40.82 -0.32 9.40 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.24 8.07 -51.93 -0.42 0.83 16 42 H 0.10 1.09 8.10 -51.93 -0.42 0.66 16 43 H 0.23 -0.14 8.06 -52.48 -0.42 -0.56 16 44 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 -0.01 8.14 -51.92 -0.42 -0.44 16 46 H 0.09 0.39 8.08 -51.93 -0.42 -0.02 16 47 H 0.08 1.17 7.94 -51.93 -0.41 0.75 16 48 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -36.17 401.41 -8.94 -45.11 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.82 Total: 5.56 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.95 Total: 7.87 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.37 Total: -64.42 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.17 -8.94 -45.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.232 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds