Wall clock time and date at job start Tue Mar 31 2020 19:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47166 * 89.99808 * 9 7 5 11 11 H 1.48501 * 109.47423 * 210.00188 * 9 7 5 12 12 H 1.48508 * 109.46891 * 329.99990 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 110.88748 * 299.30213 * 13 2 1 15 15 C 1.55158 * 111.00710 * 175.42198 * 13 2 1 16 16 C 1.54365 * 102.92041 * 206.45596 * 15 13 2 17 17 N 1.47028 * 107.29249 * 22.13366 * 16 15 13 18 18 C 1.34779 * 125.64795 * 181.12907 * 17 16 15 19 19 O 1.21278 * 119.99612 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00001 * 359.95901 * 18 17 16 21 21 C 1.53009 * 109.46866 * 179.97438 * 20 18 17 22 22 N 1.46494 * 109.47137 * 180.02562 * 21 20 18 23 23 N 1.40175 * 126.35007 * 269.68887 * 22 21 20 24 24 C 1.29395 * 108.13780 * 179.87824 * 23 22 21 25 25 N 1.37361 * 108.83306 * 0.38488 * 24 23 22 26 26 C 1.46498 * 125.83452 * 179.73249 * 25 24 23 27 27 C 1.34813 * 108.33476 * 359.75138 * 25 24 23 28 28 O 1.21815 * 126.30232 * 180.02562 * 27 25 24 29 29 C 1.47425 * 108.70050 * 1.09407 * 17 16 15 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08997 * 110.71506 * 324.78553 * 15 13 2 36 36 H 1.08993 * 110.72114 * 88.06107 * 15 13 2 37 37 H 1.09001 * 109.84582 * 262.72678 * 16 15 13 38 38 H 1.09000 * 109.90660 * 141.57633 * 16 15 13 39 39 H 1.08996 * 109.47295 * 299.99485 * 20 18 17 40 40 H 1.08996 * 109.47179 * 60.00598 * 20 18 17 41 41 H 1.09004 * 109.47023 * 300.00403 * 21 20 18 42 42 H 1.09000 * 109.46541 * 59.99853 * 21 20 18 43 43 H 1.08005 * 125.58416 * 180.13915 * 24 23 22 44 44 H 1.08998 * 109.47427 * 270.02646 * 26 25 24 45 45 H 1.09010 * 109.47055 * 30.02210 * 26 25 24 46 46 H 1.09001 * 109.47261 * 150.01743 * 26 25 24 47 47 H 1.08995 * 110.36760 * 217.03118 * 29 17 16 48 48 H 1.08999 * 110.45924 * 94.75676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3226 5.9139 12 1 3.0941 1.6955 4.8339 13 6 2.0400 -0.7213 -1.2492 14 1 1.6996 -1.7566 -1.2663 15 6 3.5866 -0.6427 -1.3444 16 6 3.8456 -0.7620 -2.8615 17 7 2.6095 -0.3602 -3.5487 18 6 2.4212 -0.3478 -4.8832 19 8 1.3549 0.0036 -5.3419 20 6 3.5357 -0.7701 -5.8054 21 6 3.0640 -0.6648 -7.2571 22 7 4.1472 -1.0760 -8.1536 23 7 5.1272 -0.2420 -8.7096 24 6 5.9066 -0.9696 -9.4427 25 7 5.4687 -2.2709 -9.3995 26 6 6.0770 -3.4043 -10.1006 27 6 4.3831 -2.3267 -8.6020 28 8 3.7349 -3.3229 -8.3350 29 6 1.6098 0.0259 -2.5363 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9482 0.3133 -0.9657 36 1 4.0486 -1.4711 -0.8074 37 1 4.0923 -1.7930 -3.1149 38 1 4.6625 -0.1012 -3.1516 39 1 4.3977 -0.1201 -5.6551 40 1 3.8157 -1.8010 -5.5887 41 1 2.2021 -1.3151 -7.4072 42 1 2.7836 0.3659 -7.4741 43 1 6.7593 -0.6117 -10.0006 44 1 5.6227 -3.5083 -11.0859 45 1 7.1476 -3.2312 -10.2106 46 1 5.9135 -4.3165 -9.5269 47 1 0.6144 -0.2928 -2.8452 48 1 1.6289 1.1035 -2.3736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699946186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:49 Heat of formation + Delta-G solvation = 0.571500 kcal Electronic energy + Delta-G solvation = -28826.503777 eV Core-core repulsion = 24725.056098 eV Total energy + Delta-G solvation = -4101.447679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.40333 -41.25714 -39.21094 -38.42452 -36.84819 -36.62372 -34.31638 -33.77949 -32.05577 -30.97491 -30.71655 -28.92452 -28.22343 -26.47929 -25.70097 -24.19667 -23.17744 -22.80424 -22.10674 -21.08958 -20.24448 -19.16656 -18.83492 -17.94869 -17.78675 -17.56477 -17.08680 -16.73201 -16.53932 -16.39497 -15.88870 -15.52033 -15.28480 -14.99683 -14.64397 -14.63776 -14.46353 -14.09834 -13.91853 -13.86414 -13.63559 -13.49364 -13.41281 -13.22422 -13.17608 -12.88970 -12.87484 -12.79129 -12.43727 -12.31023 -12.17020 -11.97345 -11.67799 -11.55055 -11.39517 -11.38085 -11.20192 -10.95006 -10.88651 -9.73006 -9.66744 -8.97193 -7.90441 -5.17465 0.71492 1.09445 1.48037 1.49095 1.50041 1.54438 1.57956 1.90025 2.28954 2.58538 3.32616 3.43376 3.45854 3.62910 3.65308 3.78257 3.84060 3.96802 4.12349 4.22271 4.26639 4.28080 4.30806 4.38097 4.51775 4.54072 4.59805 4.63708 4.66137 4.70511 4.75748 4.82867 4.88480 4.95138 4.98113 5.05223 5.08799 5.14787 5.20445 5.31839 5.38211 5.55748 5.60650 5.69981 6.31607 6.42683 6.63453 6.92927 6.99671 7.38562 8.14548 8.38143 9.32869 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.001899 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.014784 B =14742.670388 C =15268.906218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.292 1.292 11 H -0.298 1.298 12 H -0.270 1.270 13 C -0.095 4.095 14 H 0.073 0.927 15 C -0.112 4.112 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.534 3.466 19 O -0.580 6.580 20 C -0.138 4.138 21 C 0.181 3.819 22 N -0.458 5.458 23 N -0.315 5.315 24 C 0.281 3.719 25 N -0.559 5.559 26 C 0.091 3.909 27 C 0.624 3.376 28 O -0.601 6.601 29 C 0.120 3.880 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.290 0.710 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 2.244 -30.752 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.797 3.203 10 H -0.220 1.220 11 H -0.225 1.225 12 H -0.194 1.194 13 C -0.115 4.115 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.019 4.019 17 N -0.348 5.348 18 C 0.323 3.677 19 O -0.461 6.461 20 C -0.179 4.179 21 C 0.059 3.941 22 N -0.277 5.277 23 N -0.136 5.136 24 C -0.017 4.017 25 N -0.286 5.286 26 C -0.049 4.049 27 C 0.323 3.677 28 O -0.478 6.478 29 C -0.003 4.003 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.305 0.695 44 H 0.103 0.897 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.459 2.830 -30.403 32.276 hybrid contribution -0.086 -1.024 1.233 1.605 sum 10.373 1.806 -29.170 31.012 Atomic orbital electron populations 1.22370 0.98243 1.00737 1.00657 1.20300 0.92322 0.94971 0.85007 0.93266 1.42518 1.78309 1.10262 1.05947 1.19567 1.34293 0.94090 0.88276 0.90786 1.25459 1.03375 0.96851 1.01140 1.69806 1.52878 1.10085 1.29200 0.85236 0.76638 0.78169 0.80304 1.21989 1.22451 1.19450 1.22462 0.96241 0.99561 0.93238 0.90872 1.22500 0.95131 1.03331 0.94070 1.22248 0.86348 1.01352 0.91926 1.48603 1.16065 1.65255 1.04890 1.20326 0.88850 0.77072 0.81403 1.90702 1.29025 1.50425 1.75923 1.21881 0.98072 1.04767 0.93159 1.21017 0.84789 1.03020 0.85299 1.49003 1.28111 1.05695 1.44908 1.77063 1.01785 1.19196 1.15540 1.27168 0.99414 0.79072 0.96033 1.46184 1.26747 1.11638 1.44029 1.22173 1.00743 0.85429 0.96572 1.17167 0.83503 0.84574 0.82485 1.91060 1.55470 1.34628 1.66653 1.22173 0.92372 0.99467 0.86290 0.91477 0.94119 0.94381 0.79532 0.94248 0.90737 0.90614 0.90187 0.88904 0.86103 0.88295 0.89797 0.87530 0.69511 0.89736 0.84873 0.91144 0.91089 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 9.31 71.98 0.67 -4.95 16 2 C 0.18 6.78 2.40 44.99 0.11 6.89 16 3 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 4 N -0.73 -34.96 4.90 -322.94 -1.58 -36.54 16 5 C -0.23 -12.34 9.93 84.03 0.83 -11.51 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 7 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 9 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C -0.10 -2.91 2.63 -9.40 -0.02 -2.94 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.11 -3.10 6.21 31.80 0.20 -2.91 16 16 C 0.10 2.21 6.49 86.74 0.56 2.77 16 17 N -0.62 -15.64 3.33 -811.70 -2.70 -18.34 16 18 C 0.53 14.08 7.85 87.66 0.69 14.77 16 19 O -0.58 -19.25 16.24 -3.02 -0.05 -19.30 16 20 C -0.14 -2.77 5.22 29.85 0.16 -2.62 16 21 C 0.18 3.93 5.68 86.38 0.49 4.42 16 22 N -0.46 -9.48 3.63 -478.00 -1.73 -11.21 16 23 N -0.31 -4.72 12.53 -59.41 -0.74 -5.46 16 24 C 0.28 1.75 12.66 179.82 2.28 4.03 16 25 N -0.56 -6.51 3.14 -683.67 -2.15 -8.65 16 26 C 0.09 0.34 11.05 127.77 1.41 1.75 16 27 C 0.62 14.19 8.60 178.99 1.54 15.73 16 28 O -0.60 -18.90 17.71 -4.72 -0.08 -18.98 16 29 C 0.12 3.33 5.42 86.86 0.47 3.80 16 30 H 0.07 1.95 7.33 -2.39 -0.02 1.93 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.37 19.30 7.80 -92.71 -0.72 18.58 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.13 8.07 -2.38 -0.02 2.11 16 42 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 43 H 0.29 -2.12 8.06 -2.91 -0.02 -2.14 16 44 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.13 -0.67 8.14 -2.38 -0.02 -0.69 16 46 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 47 H 0.07 2.08 7.94 -2.39 -0.02 2.06 16 48 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -81.65 401.41 3.35 -78.29 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.23 Total: 24.99 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 9.85 Total: 25.42 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -8.62 Total: -138.08 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.13 Total: -38.28 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -81.65 3.35 -78.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699946186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.866 kcal (2) G-P(sol) polarization free energy of solvation -81.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds