Wall clock time and date at job start Tue Mar 31 2020 19:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47048 * 2 1 4 4 N 1.46894 * 109.47257 * 240.00270 * 2 1 3 5 5 C 1.46897 * 111.00593 * 84.99598 * 4 2 1 6 6 C 1.50701 * 109.47337 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99939 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00043 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00151 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00419 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00178 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99552 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47239 * 89.99562 * 13 11 9 15 15 H 1.48500 * 109.46945 * 209.99559 * 13 11 9 16 16 H 1.48496 * 109.47033 * 329.99473 * 13 11 9 17 17 C 1.52999 * 109.47069 * 119.99452 * 2 1 3 18 18 H 1.09001 * 109.47362 * 184.99737 * 17 2 1 19 19 C 1.53006 * 109.46623 * 65.00288 * 17 2 1 20 20 N 1.46496 * 109.47487 * 305.00526 * 17 2 1 21 21 C 1.34779 * 119.99965 * 205.00106 * 20 17 2 22 22 O 1.21276 * 120.00091 * 359.97438 * 21 20 17 23 23 C 1.50698 * 119.99670 * 179.97438 * 21 20 17 24 24 C 1.50699 * 109.47034 * 179.97438 * 23 21 20 25 25 C 1.39872 * 125.90136 * 124.70991 * 24 23 21 26 26 C 1.35316 * 107.92187 * 179.86718 * 25 24 23 27 27 N 1.34950 * 107.74595 * 0.39471 * 26 25 24 28 28 C 1.46500 * 126.03645 * 179.74797 * 27 26 25 29 29 N 1.30843 * 125.89842 * 305.02843 * 24 23 21 30 30 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47199 * 300.00113 * 1 2 3 32 32 H 1.09001 * 109.46743 * 60.00269 * 1 2 3 33 33 H 1.00907 * 110.99723 * 208.95720 * 4 2 1 34 34 H 1.08998 * 109.47426 * 300.00324 * 5 4 2 35 35 H 1.09009 * 109.46491 * 60.00380 * 5 4 2 36 36 H 0.97005 * 120.00350 * 0.02562 * 8 6 5 37 37 H 0.97004 * 119.99784 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47002 * 179.97438 * 19 17 2 39 39 H 1.08993 * 109.46955 * 300.00075 * 19 17 2 40 40 H 1.09000 * 109.47050 * 59.99904 * 19 17 2 41 41 H 0.97003 * 119.99991 * 24.99180 * 20 17 2 42 42 H 1.08999 * 109.47222 * 299.99529 * 23 21 20 43 43 H 1.09005 * 109.47434 * 60.00122 * 23 21 20 44 44 H 1.08002 * 126.03968 * 359.97438 * 25 24 23 45 45 H 1.08001 * 126.12817 * 180.15511 * 26 25 24 46 46 H 1.09000 * 109.47209 * 269.97720 * 28 27 26 47 47 H 1.09001 * 109.47085 * 29.97752 * 28 27 26 48 48 H 1.09001 * 109.46960 * 149.98638 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5215 -3.5557 7 8 2.8689 -1.6985 -3.4698 8 7 2.7296 0.1208 -4.7321 9 6 3.1895 -0.5563 -5.8319 10 1 3.4384 -1.6044 -5.7558 11 6 3.3345 0.1057 -7.0450 12 7 3.7758 -0.5432 -8.0990 13 14 2.9034 1.9185 -7.1770 14 1 4.1042 2.7365 -6.8704 15 1 2.4393 2.2178 -8.5554 16 1 1.8239 2.2422 -6.2100 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.6443 1.2952 19 6 1.6352 -2.1954 1.1880 20 7 1.4558 -0.1036 2.4424 21 6 2.0912 -0.1936 3.6276 22 8 3.1464 -0.7863 3.7064 23 6 1.4905 0.4422 4.8547 24 6 2.3904 0.1979 6.0386 25 6 2.9290 1.1803 6.8760 26 6 3.6771 0.5603 7.8177 27 7 3.6213 -0.7668 7.5794 28 6 4.2932 -1.8111 8.3567 29 7 2.8075 -0.9694 6.4573 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6163 -2.5526 35 1 2.7589 1.0462 -2.1182 36 1 2.5058 1.0621 -4.8007 37 1 3.8774 -0.0809 -8.9457 38 1 1.9989 -2.7093 2.0778 39 1 0.5490 -2.2723 1.1420 40 1 2.0699 -2.6549 0.3003 41 1 0.6117 0.3703 2.3794 42 1 1.3850 1.5150 4.6934 43 1 0.5105 0.0055 5.0475 44 1 2.7736 2.2455 6.7876 45 1 4.2243 1.0416 8.6148 46 1 5.2828 -1.9953 7.9386 47 1 4.3911 -1.4866 9.3927 48 1 3.7056 -2.7283 8.3171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700396703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:00 Heat of formation + Delta-G solvation = -15.675233 kcal Electronic energy + Delta-G solvation = -28260.717455 eV Core-core repulsion = 24158.565264 eV Total energy + Delta-G solvation = -4102.152191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10594 -40.89498 -40.26315 -38.51534 -36.08316 -35.30242 -34.75887 -33.74562 -32.45573 -31.17924 -30.54543 -29.86948 -28.25122 -26.72029 -25.98107 -24.68879 -22.18310 -21.94859 -21.29934 -20.78389 -20.48237 -20.25583 -18.36230 -17.87583 -17.57611 -17.26328 -16.75204 -16.69258 -16.43380 -16.10745 -15.96351 -15.50756 -15.15582 -15.07862 -14.71915 -14.59703 -14.46996 -14.36969 -14.05904 -13.87433 -13.54410 -13.48174 -13.42590 -13.15908 -13.07112 -13.04635 -12.85088 -12.81656 -12.47886 -12.40785 -11.96811 -11.89265 -11.64194 -11.50591 -11.49100 -10.88914 -10.43403 -10.24389 -10.17895 -10.06972 -9.43478 -9.35515 -8.40657 -6.01813 1.02784 1.30868 1.36589 1.45668 1.70591 1.73411 1.78347 1.96848 2.23898 2.27532 2.80921 3.15861 3.41025 3.55839 3.66612 3.92334 3.96049 4.01124 4.15287 4.20902 4.24859 4.40038 4.43241 4.44423 4.49065 4.57500 4.57792 4.66579 4.68111 4.83084 4.86297 4.88968 4.93325 5.00947 5.08365 5.17405 5.29819 5.51975 5.54254 5.56094 5.73973 5.91254 6.05755 6.23091 6.31975 6.60162 6.63545 6.84730 6.88843 7.36034 7.40461 7.97660 8.77088 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.001708 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.098759 B =16392.807232 C =16490.197660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.066 0.934 4 N -0.675 5.675 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.615 6.615 8 N -0.590 5.590 9 C -0.330 4.330 10 H 0.053 0.947 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.275 1.275 16 H -0.228 1.228 17 C 0.151 3.849 18 H 0.059 0.941 19 C -0.149 4.149 20 N -0.708 5.708 21 C 0.511 3.489 22 O -0.578 6.578 23 C -0.053 4.053 24 C 0.062 3.938 25 C -0.283 4.283 26 C 0.051 3.949 27 N -0.389 5.389 28 C 0.094 3.906 29 N -0.323 5.323 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.342 0.658 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.418 0.582 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.172 0.828 45 H 0.212 0.788 46 H 0.074 0.926 47 H 0.122 0.878 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 12.732 35.552 38.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.084 0.916 4 N -0.308 5.308 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.499 6.499 8 N -0.232 5.232 9 C -0.459 4.459 10 H 0.071 0.929 11 C -0.215 4.215 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.152 1.152 17 C 0.045 3.955 18 H 0.077 0.923 19 C -0.208 4.208 20 N -0.363 5.363 21 C 0.298 3.702 22 O -0.456 6.456 23 C -0.094 4.094 24 C -0.104 4.104 25 C -0.312 4.312 26 C -0.095 4.095 27 N -0.171 5.171 28 C -0.046 4.046 29 N -0.147 5.147 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.257 0.743 42 H 0.169 0.831 43 H 0.150 0.850 44 H 0.189 0.811 45 H 0.228 0.772 46 H 0.092 0.908 47 H 0.141 0.859 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.993 9.879 35.206 37.429 hybrid contribution 0.896 1.576 -0.611 1.913 sum -7.097 11.455 34.595 37.127 Atomic orbital electron populations 1.21914 0.92563 1.02823 1.02767 1.21769 0.97726 0.96009 0.87085 0.91633 1.60216 1.34672 1.32378 1.03569 1.21692 1.03182 0.93660 0.88365 1.21020 0.82255 0.87928 0.85244 1.90555 1.55297 1.18663 1.85399 1.42012 1.60572 1.11828 1.08805 1.19009 1.42365 0.96068 0.88501 0.92863 1.26148 0.96374 1.05156 0.93784 1.69812 1.46306 1.39633 1.01834 0.85342 0.80233 0.76296 0.79499 1.18235 1.20041 1.15160 1.20762 0.97367 0.92947 0.84397 0.92268 1.22017 1.02544 0.95410 1.00786 1.45914 1.26462 1.57003 1.06942 1.21036 0.84421 0.79423 0.85312 1.90747 1.24899 1.44011 1.85961 1.20178 0.98270 1.05127 0.85799 1.22080 0.99365 0.91185 0.97802 1.21755 1.08077 1.01308 1.00081 1.23213 1.00738 0.83771 1.01731 1.48882 1.38406 1.07061 1.22781 1.22111 0.96888 0.89904 0.95694 1.77347 1.11873 1.24263 1.01170 0.92375 0.89530 0.91974 0.83927 0.86362 0.90546 0.77410 0.91165 0.94616 0.90810 0.92197 0.74286 0.83129 0.85040 0.81082 0.77173 0.90768 0.85936 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.93 71.98 0.64 -1.51 16 2 C 0.08 1.64 2.66 44.92 0.12 1.76 16 3 H 0.07 1.10 7.80 -2.39 -0.02 1.09 16 4 N -0.67 -19.36 5.14 -495.58 -2.55 -21.91 16 5 C 0.06 1.87 5.97 85.56 0.51 2.38 16 6 C 0.45 20.23 7.82 87.66 0.69 20.92 16 7 O -0.61 -34.54 15.78 -3.08 -0.05 -34.59 16 8 N -0.59 -27.86 5.09 -306.98 -1.56 -29.42 16 9 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 10 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 11 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 12 N -0.94 -56.88 13.96 21.66 0.30 -56.58 16 13 Si 0.97 38.68 27.74 68.60 1.90 40.58 16 14 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 15 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 16 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 17 C 0.15 3.29 2.30 44.99 0.10 3.40 16 18 H 0.06 1.63 7.58 -2.39 -0.02 1.62 16 19 C -0.15 -3.74 9.02 71.98 0.65 -3.09 16 20 N -0.71 -11.25 4.99 -442.54 -2.21 -13.46 16 21 C 0.51 10.81 7.78 87.66 0.68 11.49 16 22 O -0.58 -19.07 15.22 -3.02 -0.05 -19.11 16 23 C -0.05 -0.69 6.28 29.10 0.18 -0.51 16 24 C 0.06 1.27 6.02 43.10 0.26 1.53 16 25 C -0.28 -4.34 10.72 21.99 0.24 -4.10 16 26 C 0.05 0.70 11.49 83.54 0.96 1.66 16 27 N -0.39 -7.26 4.01 -369.56 -1.48 -8.75 16 28 C 0.09 0.98 11.47 127.77 1.47 2.44 16 29 N -0.32 -8.39 11.92 -47.38 -0.56 -8.95 16 30 H 0.06 1.06 6.57 -2.39 -0.02 1.04 16 31 H 0.09 0.68 6.29 -2.39 -0.02 0.66 16 32 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 33 H 0.34 11.15 7.61 -89.69 -0.68 10.47 16 34 H 0.12 2.87 7.44 -2.39 -0.02 2.85 16 35 H 0.08 1.85 8.06 -2.38 -0.02 1.83 16 36 H 0.39 15.06 5.76 -92.70 -0.53 14.53 16 37 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.61 6.56 -2.39 -0.02 1.59 16 40 H 0.06 1.74 7.17 -2.39 -0.02 1.72 16 41 H 0.42 3.35 6.58 -92.71 -0.61 2.74 16 42 H 0.15 0.74 8.12 -2.39 -0.02 0.72 16 43 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -95.29 396.20 0.69 -94.60 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.87 Total: 40.34 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 7.82 Total: 17.25 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -8.06 Total: -139.06 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.09 Total: -53.70 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -95.29 0.69 -94.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700396703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.920 kcal (2) G-P(sol) polarization free energy of solvation -95.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds