Wall clock time and date at job start Tue Mar 31 2020 20:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46827 * 2 1 4 4 C 1.53001 * 109.46811 * 240.00376 * 2 1 3 5 5 N 1.46507 * 109.46975 * 294.77454 * 4 2 1 6 6 C 1.34777 * 119.99612 * 175.02459 * 5 4 2 7 7 O 1.21281 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47585 * 180.02562 * 8 6 5 10 10 C 1.39867 * 126.04169 * 90.01932 * 9 8 6 11 11 N 1.30842 * 108.20115 * 179.97438 * 10 9 8 12 12 N 1.40078 * 108.20590 * 0.02562 * 11 10 9 13 13 C 1.46501 * 126.03486 * 180.02562 * 12 11 10 14 14 C 1.34949 * 107.92889 * 359.75562 * 12 11 10 15 15 N 1.46897 * 109.47109 * 120.00173 * 2 1 3 16 16 C 1.46901 * 110.99690 * 175.38826 * 15 2 1 17 17 C 1.46901 * 111.00065 * 299.34294 * 15 2 1 18 18 C 1.50699 * 109.47095 * 170.00051 * 17 15 2 19 19 O 1.21297 * 119.99963 * 0.02562 * 18 17 15 20 20 N 1.34771 * 119.99941 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00004 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99781 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99873 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47164 * 89.99217 * 25 23 21 27 27 H 1.48494 * 109.47105 * 209.99819 * 25 23 21 28 28 H 1.48503 * 109.46615 * 329.99685 * 25 23 21 29 29 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47073 * 299.99131 * 1 2 3 31 31 H 1.08998 * 109.47119 * 60.00206 * 1 2 3 32 32 H 1.08997 * 109.47542 * 54.77659 * 4 2 1 33 33 H 1.08997 * 109.46712 * 174.78060 * 4 2 1 34 34 H 0.96989 * 120.00038 * 355.02527 * 5 4 2 35 35 H 1.09003 * 109.47102 * 299.99678 * 8 6 5 36 36 H 1.09006 * 109.47139 * 59.99713 * 8 6 5 37 37 H 1.08006 * 125.89958 * 0.02562 * 10 9 8 38 38 H 1.08997 * 109.47758 * 89.97264 * 13 12 11 39 39 H 1.09007 * 109.46821 * 209.97103 * 13 12 11 40 40 H 1.09000 * 109.46902 * 329.96833 * 13 12 11 41 41 H 1.07994 * 126.13179 * 180.24559 * 14 12 11 42 42 H 1.09000 * 109.47049 * 177.40939 * 16 15 2 43 43 H 1.09002 * 109.47092 * 297.40743 * 16 15 2 44 44 H 1.09004 * 109.47262 * 57.41073 * 16 15 2 45 45 H 1.08993 * 109.47366 * 50.00106 * 17 15 2 46 46 H 1.08998 * 109.46866 * 290.00220 * 17 15 2 47 47 H 0.97003 * 120.00312 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6570 -2.1340 -1.1881 6 6 1.9128 -2.9473 -2.2320 7 8 2.4595 -2.5095 -3.2221 8 6 1.5183 -4.4003 -2.1693 9 6 1.9133 -5.0840 -3.4529 10 6 3.1367 -5.7120 -3.7081 11 7 3.1058 -6.1873 -4.9267 12 7 1.8602 -5.8757 -5.4865 13 6 1.4106 -6.2241 -6.8366 14 6 1.1451 -5.2031 -4.5605 15 7 2.0197 -0.6925 1.1994 16 6 3.4840 -0.8083 1.1794 17 6 1.5616 -0.0174 2.4210 18 6 1.8693 -0.8805 3.6174 19 8 2.4168 -1.9524 3.4673 20 7 1.5370 -0.4610 4.8543 21 6 1.8174 -1.2460 5.9428 22 1 2.3042 -2.2006 5.8090 23 6 1.4743 -0.8136 7.2180 24 7 0.8816 0.3479 7.3807 25 14 1.8557 -1.8835 8.7011 26 1 3.2059 -1.5473 9.2199 27 1 0.8437 -1.6403 9.7602 28 1 1.8207 -3.3134 8.3019 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.6023 -0.2642 -2.1368 33 1 3.1260 -0.6409 -1.2973 34 1 1.2195 -2.4840 -0.3964 35 1 2.0263 -4.8789 -1.3320 36 1 0.4397 -4.4785 -2.0326 37 1 3.9638 -5.7917 -3.0180 38 1 0.9182 -7.1963 -6.8162 39 1 0.7093 -5.4691 -7.1922 40 1 2.2697 -6.2659 -7.5061 41 1 0.1406 -4.8257 -4.6823 42 1 3.8235 -1.2836 2.0997 43 1 3.7891 -1.4121 0.3247 44 1 3.9260 0.1849 1.0989 45 1 0.4864 0.1512 2.3616 46 1 2.0744 0.9392 2.5215 47 1 1.0995 0.3964 4.9745 48 1 0.6425 0.6498 8.2710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700452776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:12 Heat of formation + Delta-G solvation = 19.081760 kcal Electronic energy + Delta-G solvation = -28774.435118 eV Core-core repulsion = 24673.790103 eV Total energy + Delta-G solvation = -4100.645014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36559 -39.69417 -38.69032 -37.19990 -34.29261 -33.79719 -33.71750 -31.99222 -31.25978 -30.96293 -28.85954 -28.22068 -26.50027 -25.34736 -24.88159 -23.63235 -21.25564 -21.19820 -20.01673 -19.91656 -19.08508 -17.86181 -17.19586 -16.93518 -16.53222 -15.67898 -15.56104 -15.46995 -15.11025 -14.71547 -14.67914 -14.52162 -14.06110 -13.83950 -13.67133 -13.52193 -13.33330 -13.24173 -13.02799 -12.78447 -12.67418 -12.41334 -12.22445 -11.92028 -11.80917 -11.60654 -11.47925 -11.31404 -11.21353 -10.92608 -10.72698 -10.59673 -10.40402 -10.23098 -9.80656 -9.54446 -9.48856 -8.90438 -8.52169 -8.46563 -8.00203 -7.90310 -6.43230 -3.83982 1.74410 2.35448 2.61731 2.78692 3.16542 3.25532 3.30991 3.45338 3.88721 3.95369 4.22935 4.29524 4.63621 4.72185 4.82382 4.88403 4.90969 4.96463 5.07679 5.11223 5.13566 5.22048 5.26227 5.28942 5.50943 5.56692 5.61897 5.63892 5.70440 5.72812 5.80842 5.90649 5.96563 5.98021 6.00500 6.20388 6.28346 6.49989 6.52452 6.58705 6.83205 7.22282 7.34313 7.53787 7.55246 7.71033 8.04977 8.39162 8.60196 9.16809 9.53170 10.04759 10.74428 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.002001 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.829962 B =13987.504239 C =14912.173618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.052 0.948 4 C 0.131 3.869 5 N -0.716 5.716 6 C 0.510 3.490 7 O -0.546 6.546 8 C -0.062 4.062 9 C -0.215 4.215 10 C 0.064 3.936 11 N -0.301 5.301 12 N -0.379 5.379 13 C 0.104 3.896 14 C 0.066 3.934 15 N -0.513 5.513 16 C 0.020 3.980 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.413 0.587 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.181 0.819 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.171 0.829 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -4.655 -22.251 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 H 0.070 0.930 4 C 0.006 3.994 5 N -0.369 5.369 6 C 0.296 3.704 7 O -0.423 6.423 8 C -0.103 4.103 9 C -0.227 4.227 10 C -0.122 4.122 11 N -0.122 5.122 12 N -0.161 5.161 13 C -0.038 4.038 14 C -0.080 4.080 15 N -0.238 5.238 16 C -0.128 4.128 17 C -0.090 4.090 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.198 0.802 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.188 0.812 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.032 0.968 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.713 -6.115 -23.954 24.871 hybrid contribution -0.472 1.382 1.937 2.426 sum -3.185 -4.733 -22.017 22.744 Atomic orbital electron populations 1.21907 0.93888 1.02866 1.01831 1.21973 0.96311 0.95939 0.90324 0.92975 1.21324 0.99900 0.81467 0.96690 1.45931 1.61947 1.09648 1.19388 1.20717 0.78716 0.88287 0.82662 1.90683 1.42476 1.76970 1.32196 1.19896 1.03007 0.91446 0.95943 1.19437 0.95936 1.10180 0.97125 1.23749 0.97883 0.96695 0.93877 1.77331 0.99964 1.24512 1.10437 1.48364 1.11423 1.44001 1.12334 1.21815 1.01081 1.01589 0.79311 1.22215 0.98624 0.97715 0.89470 1.61628 1.11814 1.50401 0.99921 1.22576 0.86366 0.99194 1.04675 1.21945 1.01452 0.95453 0.90151 1.19723 0.85177 0.88337 0.83793 1.90487 1.46678 1.23719 1.85274 1.41872 1.53187 1.20309 1.04747 1.19687 1.36572 1.02558 0.83968 0.87910 1.25253 0.96942 0.96669 0.99078 1.69609 1.41167 1.19517 1.24022 0.85871 0.78009 0.80091 0.80399 1.20464 1.20958 1.19406 0.91592 0.91899 0.92270 0.91249 0.91792 0.75071 0.87819 0.88464 0.80160 0.90899 0.89608 0.89402 0.81228 0.88583 0.91816 0.96798 0.88977 0.93525 0.77544 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.88 37.16 0.33 -1.16 16 2 C 0.06 0.73 2.34 -67.71 -0.16 0.57 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.13 1.50 4.59 -4.04 -0.02 1.48 16 5 N -0.72 -8.13 5.05 -60.29 -0.30 -8.44 16 6 C 0.51 6.25 7.82 -10.99 -0.09 6.17 16 7 O -0.55 -8.78 16.03 5.56 0.09 -8.69 16 8 C -0.06 -0.58 6.18 -29.04 -0.18 -0.76 16 9 C -0.21 -2.37 4.59 -105.05 -0.48 -2.85 16 10 C 0.06 0.77 11.96 -17.36 -0.21 0.56 16 11 N -0.30 -3.89 12.58 30.63 0.39 -3.50 16 12 N -0.38 -3.93 4.01 -68.16 -0.27 -4.21 16 13 C 0.10 0.60 11.47 59.85 0.69 1.28 16 14 C 0.07 0.65 11.40 -17.22 -0.20 0.45 16 15 N -0.51 -7.54 3.73 -236.33 -0.88 -8.42 16 16 C 0.02 0.30 8.66 60.07 0.52 0.82 16 17 C 0.04 0.68 5.27 -4.98 -0.03 0.65 16 18 C 0.44 9.89 7.45 -10.99 -0.08 9.81 16 19 O -0.58 -14.62 13.93 5.54 0.08 -14.55 16 20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 30 H 0.06 0.65 6.21 -51.93 -0.32 0.33 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 34 H 0.41 4.62 7.42 -40.82 -0.30 4.31 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.10 1.82 5.80 -51.93 -0.30 1.52 16 43 H 0.06 0.92 6.48 -51.93 -0.34 0.58 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.36 5.85 -51.93 -0.30 1.06 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -34.77 397.01 -6.62 -41.40 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.20 Total: 12.62 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.14 Total: 9.29 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.41 Total: -61.70 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.77 -6.62 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700452776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.479 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds