Wall clock time and date at job start Tue Mar 31 2020 20:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46827 * 2 1 4 4 C 1.53001 * 109.46811 * 240.00376 * 2 1 3 5 5 N 1.46507 * 109.46975 * 294.77454 * 4 2 1 6 6 C 1.34777 * 119.99612 * 175.02459 * 5 4 2 7 7 O 1.21281 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47585 * 180.02562 * 8 6 5 10 10 C 1.39867 * 126.04169 * 90.01932 * 9 8 6 11 11 N 1.30842 * 108.20115 * 179.97438 * 10 9 8 12 12 N 1.40078 * 108.20590 * 0.02562 * 11 10 9 13 13 C 1.46501 * 126.03486 * 180.02562 * 12 11 10 14 14 C 1.34949 * 107.92889 * 359.75562 * 12 11 10 15 15 N 1.46897 * 109.47109 * 120.00173 * 2 1 3 16 16 C 1.46901 * 110.99690 * 175.38826 * 15 2 1 17 17 C 1.46901 * 111.00065 * 299.34294 * 15 2 1 18 18 C 1.50699 * 109.47095 * 170.00051 * 17 15 2 19 19 O 1.21297 * 119.99963 * 0.02562 * 18 17 15 20 20 N 1.34771 * 119.99941 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00004 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99781 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99873 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47164 * 89.99217 * 25 23 21 27 27 H 1.48494 * 109.47105 * 209.99819 * 25 23 21 28 28 H 1.48503 * 109.46615 * 329.99685 * 25 23 21 29 29 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47073 * 299.99131 * 1 2 3 31 31 H 1.08998 * 109.47119 * 60.00206 * 1 2 3 32 32 H 1.08997 * 109.47542 * 54.77659 * 4 2 1 33 33 H 1.08997 * 109.46712 * 174.78060 * 4 2 1 34 34 H 0.96989 * 120.00038 * 355.02527 * 5 4 2 35 35 H 1.09003 * 109.47102 * 299.99678 * 8 6 5 36 36 H 1.09006 * 109.47139 * 59.99713 * 8 6 5 37 37 H 1.08006 * 125.89958 * 0.02562 * 10 9 8 38 38 H 1.08997 * 109.47758 * 89.97264 * 13 12 11 39 39 H 1.09007 * 109.46821 * 209.97103 * 13 12 11 40 40 H 1.09000 * 109.46902 * 329.96833 * 13 12 11 41 41 H 1.07994 * 126.13179 * 180.24559 * 14 12 11 42 42 H 1.09000 * 109.47049 * 177.40939 * 16 15 2 43 43 H 1.09002 * 109.47092 * 297.40743 * 16 15 2 44 44 H 1.09004 * 109.47262 * 57.41073 * 16 15 2 45 45 H 1.08993 * 109.47366 * 50.00106 * 17 15 2 46 46 H 1.08998 * 109.46866 * 290.00220 * 17 15 2 47 47 H 0.97003 * 120.00312 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99846 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6570 -2.1340 -1.1881 6 6 1.9128 -2.9473 -2.2320 7 8 2.4595 -2.5095 -3.2221 8 6 1.5183 -4.4003 -2.1693 9 6 1.9133 -5.0840 -3.4529 10 6 3.1367 -5.7120 -3.7081 11 7 3.1058 -6.1873 -4.9267 12 7 1.8602 -5.8757 -5.4865 13 6 1.4106 -6.2241 -6.8366 14 6 1.1451 -5.2031 -4.5605 15 7 2.0197 -0.6925 1.1994 16 6 3.4840 -0.8083 1.1794 17 6 1.5616 -0.0174 2.4210 18 6 1.8693 -0.8805 3.6174 19 8 2.4168 -1.9524 3.4673 20 7 1.5370 -0.4610 4.8543 21 6 1.8174 -1.2460 5.9428 22 1 2.3042 -2.2006 5.8090 23 6 1.4743 -0.8136 7.2180 24 7 0.8816 0.3479 7.3807 25 14 1.8557 -1.8835 8.7011 26 1 3.2059 -1.5473 9.2199 27 1 0.8437 -1.6403 9.7602 28 1 1.8207 -3.3134 8.3019 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.6023 -0.2642 -2.1368 33 1 3.1260 -0.6409 -1.2973 34 1 1.2195 -2.4840 -0.3964 35 1 2.0263 -4.8789 -1.3320 36 1 0.4397 -4.4785 -2.0326 37 1 3.9638 -5.7917 -3.0180 38 1 0.9182 -7.1963 -6.8162 39 1 0.7093 -5.4691 -7.1922 40 1 2.2697 -6.2659 -7.5061 41 1 0.1406 -4.8257 -4.6823 42 1 3.8235 -1.2836 2.0997 43 1 3.7891 -1.4121 0.3247 44 1 3.9260 0.1849 1.0989 45 1 0.4864 0.1512 2.3616 46 1 2.0744 0.9392 2.5215 47 1 1.0995 0.3964 4.9745 48 1 0.6425 0.6498 8.2710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700452776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:11 Heat of formation + Delta-G solvation = -7.296916 kcal Electronic energy + Delta-G solvation = -28775.578983 eV Core-core repulsion = 24673.790103 eV Total energy + Delta-G solvation = -4101.788879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13476 -40.78992 -40.12903 -38.56046 -35.94896 -35.08054 -34.50124 -33.21831 -32.81957 -31.92576 -29.92887 -29.18875 -27.50806 -26.61119 -26.01369 -25.03159 -22.09097 -21.99920 -21.23822 -20.82592 -20.57416 -19.77111 -18.16723 -17.83588 -17.69135 -16.99472 -16.55989 -16.51671 -16.21459 -16.15895 -15.99121 -15.49713 -15.33455 -15.14807 -15.07106 -14.46671 -14.37309 -14.20361 -13.88811 -13.75686 -13.53752 -13.38718 -13.33422 -13.14426 -13.06864 -12.88414 -12.69427 -12.60680 -12.38881 -12.27952 -12.22259 -12.10092 -11.63686 -11.52095 -11.40370 -10.82007 -10.32409 -10.20329 -9.94180 -9.87513 -9.28845 -9.19090 -8.42116 -5.89712 0.99124 1.40312 1.44294 1.56297 1.71836 1.79306 1.85194 2.12606 2.30869 2.54308 2.82821 3.25408 3.48281 3.67539 3.78739 4.01905 4.05537 4.13945 4.24795 4.32525 4.37898 4.39303 4.44007 4.45537 4.54699 4.56861 4.63293 4.67495 4.69284 4.78044 4.84403 4.87868 4.92527 4.99081 5.07640 5.21609 5.23216 5.40960 5.45936 5.62071 5.70855 5.91733 6.10606 6.19135 6.23623 6.66399 6.75367 6.78496 7.18894 7.46051 7.63620 8.19453 8.75204 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.002001 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.829962 B =13987.504239 C =14912.173618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.065 0.935 4 C 0.133 3.867 5 N -0.710 5.710 6 C 0.511 3.489 7 O -0.587 6.587 8 C -0.054 4.054 9 C -0.236 4.236 10 C 0.045 3.955 11 N -0.340 5.340 12 N -0.383 5.383 13 C 0.093 3.907 14 C 0.068 3.932 15 N -0.521 5.521 16 C 0.028 3.972 17 C 0.054 3.946 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.328 4.328 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.415 0.585 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.187 0.813 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -4.084 -22.992 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 H 0.083 0.917 4 C 0.009 3.991 5 N -0.362 5.362 6 C 0.299 3.701 7 O -0.467 6.467 8 C -0.095 4.095 9 C -0.248 4.248 10 C -0.141 4.141 11 N -0.162 5.162 12 N -0.165 5.165 13 C -0.046 4.046 14 C -0.079 4.079 15 N -0.246 5.246 16 C -0.120 4.120 17 C -0.077 4.077 18 C 0.232 3.768 19 O -0.496 6.496 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.200 1.200 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.252 0.748 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.204 0.796 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.220 0.780 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.453 -5.533 -24.703 25.704 hybrid contribution 0.067 1.199 2.042 2.369 sum -4.386 -4.334 -22.660 23.484 Atomic orbital electron populations 1.21906 0.92418 1.03078 1.02824 1.22021 0.97320 0.96104 0.88386 0.91674 1.21297 0.99210 0.81638 0.96974 1.45930 1.61427 1.09657 1.19220 1.21171 0.77733 0.89260 0.81956 1.90665 1.44438 1.77875 1.33759 1.19912 1.04752 0.89225 0.95622 1.19698 0.95886 1.10861 0.98309 1.24029 0.98833 0.97144 0.94045 1.77243 1.01905 1.25963 1.11128 1.48755 1.10677 1.43428 1.13620 1.22168 1.01660 1.03421 0.77391 1.22786 0.99668 0.96583 0.88851 1.61577 1.11261 1.51309 1.00461 1.22388 0.87139 0.99609 1.02839 1.21811 1.03134 0.94524 0.88205 1.20758 0.83138 0.88309 0.84641 1.90472 1.47604 1.25564 1.85981 1.41940 1.54082 1.20361 1.05075 1.19630 1.37931 1.02547 0.85619 0.90264 1.25972 0.96480 0.97828 1.01049 1.69668 1.41421 1.20358 1.24812 0.84979 0.78118 0.78226 0.77339 1.19965 1.19759 1.19726 0.91799 0.91910 0.90256 0.90457 0.93057 0.74786 0.87105 0.85651 0.79619 0.89267 0.86956 0.89584 0.77951 0.92462 0.91108 0.95540 0.86557 0.91929 0.77145 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.88 71.99 0.64 -1.82 16 2 C 0.07 1.42 2.34 44.92 0.11 1.52 16 3 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.13 2.82 4.59 86.38 0.40 3.22 16 5 N -0.71 -15.02 5.05 -463.05 -2.34 -17.36 16 6 C 0.51 11.94 7.82 87.66 0.69 12.63 16 7 O -0.59 -18.56 16.03 -3.03 -0.05 -18.60 16 8 C -0.05 -0.95 6.18 29.10 0.18 -0.77 16 9 C -0.24 -5.00 4.59 -20.14 -0.09 -5.09 16 10 C 0.04 1.09 11.96 85.23 1.02 2.11 16 11 N -0.34 -8.88 12.58 -57.02 -0.72 -9.59 16 12 N -0.38 -7.55 4.01 -369.56 -1.48 -9.04 16 13 C 0.09 0.92 11.47 127.77 1.47 2.39 16 14 C 0.07 1.23 11.40 83.54 0.95 2.18 16 15 N -0.52 -14.49 3.73 -901.60 -3.36 -17.86 16 16 C 0.03 0.86 8.66 127.69 1.11 1.96 16 17 C 0.05 1.69 5.27 85.56 0.45 2.14 16 18 C 0.44 19.80 7.45 87.66 0.65 20.45 16 19 O -0.61 -31.53 13.93 -3.08 -0.04 -31.57 16 20 N -0.58 -28.37 5.29 -306.99 -1.62 -29.99 16 21 C -0.33 -18.06 9.68 84.04 0.81 -17.24 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 24 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 25 Si 0.99 42.27 29.55 68.60 2.03 44.30 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.06 1.13 7.31 -2.39 -0.02 1.11 16 30 H 0.06 1.09 6.21 -2.39 -0.01 1.07 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.23 6.71 -2.39 -0.02 1.22 16 34 H 0.41 8.56 7.42 -92.72 -0.69 7.88 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.19 3.90 8.06 -2.91 -0.02 3.87 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.49 8.14 -2.38 -0.02 0.48 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.06 2.21 5.80 -2.39 -0.01 2.19 16 43 H 0.07 2.01 6.48 -2.39 -0.02 2.00 16 44 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.12 3.13 5.85 -2.39 -0.01 3.11 16 46 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 47 H 0.39 18.52 7.90 -92.71 -0.73 17.79 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -76.80 397.01 1.11 -75.69 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.42 Total: 39.11 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 8.84 Total: 23.42 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -9.24 Total: -132.34 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.09 Total: -50.18 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -76.80 1.11 -75.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700452776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.391 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds