Wall clock time and date at job start Tue Mar 31 2020 20:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47229 * 120.00629 * 2 1 3 5 5 N 1.46501 * 109.47122 * 174.93767 * 4 2 1 6 6 C 1.34769 * 119.99909 * 175.21408 * 5 4 2 7 7 O 1.21283 * 120.00104 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99962 * 180.02562 * 6 5 4 9 9 C 1.50708 * 109.47044 * 179.97438 * 8 6 5 10 10 C 1.39867 * 126.03670 * 90.02254 * 9 8 6 11 11 N 1.30841 * 108.20273 * 179.97438 * 10 9 8 12 12 N 1.40080 * 108.20333 * 0.02562 * 11 10 9 13 13 C 1.46497 * 126.03913 * 180.02562 * 12 11 10 14 14 C 1.34956 * 107.92490 * 359.75540 * 12 11 10 15 15 N 1.46904 * 109.46847 * 240.00617 * 2 1 3 16 16 C 1.46900 * 111.00337 * 72.91132 * 15 2 1 17 17 C 1.46899 * 111.00234 * 308.95502 * 15 2 1 18 18 C 1.50693 * 109.47754 * 190.00096 * 17 15 2 19 19 O 1.21300 * 119.99736 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00359 * 180.02562 * 18 17 15 21 21 C 1.37103 * 120.00210 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99412 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00164 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47455 * 59.99969 * 25 23 21 27 27 H 1.48507 * 109.47016 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47435 * 299.99586 * 25 23 21 29 29 H 1.08997 * 109.47222 * 59.99257 * 1 2 3 30 30 H 1.09002 * 109.47192 * 299.99777 * 1 2 3 31 31 H 1.08994 * 109.47533 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46994 * 294.93892 * 4 2 1 33 33 H 1.08998 * 109.47177 * 54.94063 * 4 2 1 34 34 H 0.97001 * 120.00119 * 355.22450 * 5 4 2 35 35 H 1.09002 * 109.46780 * 299.99207 * 8 6 5 36 36 H 1.08997 * 109.47309 * 60.00010 * 8 6 5 37 37 H 1.08006 * 125.90407 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47027 * 89.97334 * 13 12 11 39 39 H 1.09002 * 109.47461 * 209.97099 * 13 12 11 40 40 H 1.08996 * 109.47038 * 329.97445 * 13 12 11 41 41 H 1.08007 * 126.12802 * 180.24039 * 14 12 11 42 42 H 1.09003 * 109.46704 * 64.17186 * 16 15 2 43 43 H 1.08994 * 109.47282 * 184.17434 * 16 15 2 44 44 H 1.08998 * 109.46990 * 304.17955 * 16 15 2 45 45 H 1.09004 * 109.47246 * 310.00517 * 17 15 2 46 46 H 1.09001 * 109.46692 * 69.99911 * 17 15 2 47 47 H 0.97001 * 120.00454 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99686 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.4999 -0.8278 1.1897 6 6 4.1810 -1.3431 2.2323 7 8 3.5852 -1.7192 3.2195 8 6 5.6829 -1.4521 2.1714 9 6 6.1951 -2.0558 3.4538 10 6 6.3820 -3.4191 3.7043 11 7 6.8388 -3.5518 4.9232 12 7 6.9565 -2.2753 5.4878 13 6 7.4321 -1.9713 6.8397 14 6 6.5602 -1.3745 4.5643 15 7 2.0196 -0.6924 -1.1996 16 6 1.8151 0.1276 -2.4011 17 6 1.3822 -2.0078 -1.3452 18 6 2.0776 -2.7855 -2.4326 19 8 3.0127 -2.2926 -3.0275 20 7 1.6606 -4.0287 -2.7442 21 6 2.2936 -4.7364 -3.7331 22 1 3.1263 -4.2974 -4.2628 23 6 1.8640 -6.0183 -4.0540 24 7 0.8512 -6.5524 -3.4091 25 14 2.7262 -6.9821 -5.4019 26 1 4.1562 -7.1620 -5.0447 27 1 2.0813 -8.3117 -5.5496 28 1 2.6258 -6.2389 -6.6836 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7526 -0.1580 2.1368 33 1 1.6046 -1.7195 1.2955 34 1 3.9764 -0.5273 0.4001 35 1 5.9673 -2.0863 1.3318 36 1 6.1141 -0.4597 2.0398 37 1 6.1836 -4.2235 3.0113 38 1 8.5125 -1.8287 6.8212 39 1 6.9515 -1.0608 7.1978 40 1 7.1860 -2.7982 7.5058 41 1 6.5366 -0.3020 4.6899 42 1 2.4144 1.0351 -2.3279 43 1 2.1178 -0.4376 -3.2826 44 1 0.7614 0.3938 -2.4843 45 1 1.4557 -2.5534 -0.4044 46 1 0.3324 -1.8758 -1.6075 47 1 0.9130 -4.4231 -2.2682 48 1 0.5511 -7.4472 -3.6334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700452777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:15 Heat of formation + Delta-G solvation = 17.789951 kcal Electronic energy + Delta-G solvation = -29132.245512 eV Core-core repulsion = 25031.544481 eV Total energy + Delta-G solvation = -4100.701031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27521 -39.61875 -38.72222 -37.18574 -34.24578 -33.75644 -33.70115 -31.89916 -31.23530 -30.83980 -28.58836 -28.02793 -26.71174 -25.45717 -24.79087 -23.72643 -21.16579 -20.89051 -20.42976 -19.76664 -18.84907 -17.79165 -17.06853 -16.77383 -16.62192 -15.88569 -15.47986 -15.36893 -14.85229 -14.77548 -14.50801 -14.39807 -14.08031 -13.87030 -13.54923 -13.49490 -13.30697 -13.18238 -12.83126 -12.69432 -12.62789 -12.48856 -12.24402 -12.01211 -11.80290 -11.68554 -11.46733 -11.23931 -11.13457 -10.84934 -10.74940 -10.63044 -10.43286 -10.20166 -9.71025 -9.45351 -9.45241 -8.82712 -8.45555 -8.41673 -7.97394 -7.87098 -6.40231 -3.81157 1.82699 2.43925 2.71061 2.88583 3.20819 3.26889 3.30694 3.51818 3.91450 4.00958 4.25229 4.37117 4.70233 4.73351 4.88608 4.94768 4.98407 5.06282 5.11835 5.14081 5.21281 5.23286 5.28472 5.34909 5.50157 5.51885 5.61193 5.67498 5.72690 5.78323 5.81147 5.92029 5.96970 6.03770 6.05868 6.17027 6.29318 6.50079 6.59911 6.65991 6.91722 7.23259 7.33720 7.56066 7.64593 7.79545 8.07238 8.48606 8.62783 9.19193 9.55940 10.07334 10.77421 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.002768 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.552138 B =10114.328828 C =12263.310937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.065 3.935 3 H 0.087 0.913 4 C 0.131 3.869 5 N -0.716 5.716 6 C 0.510 3.490 7 O -0.545 6.545 8 C -0.062 4.062 9 C -0.214 4.214 10 C 0.066 3.934 11 N -0.301 5.301 12 N -0.380 5.380 13 C 0.104 3.896 14 C 0.065 3.935 15 N -0.511 5.511 16 C 0.021 3.979 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.183 0.817 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 14.891 14.895 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.006 3.994 5 N -0.369 5.369 6 C 0.296 3.704 7 O -0.422 6.422 8 C -0.103 4.103 9 C -0.226 4.226 10 C -0.121 4.121 11 N -0.122 5.122 12 N -0.163 5.163 13 C -0.037 4.037 14 C -0.082 4.082 15 N -0.234 5.234 16 C -0.127 4.127 17 C -0.090 4.090 18 C 0.230 3.770 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.247 0.753 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.200 0.800 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.187 0.813 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.069 13.894 16.299 22.553 hybrid contribution -1.200 0.040 -1.429 1.866 sum 5.869 13.933 14.870 21.206 Atomic orbital electron populations 1.22405 0.96641 1.03023 1.02443 1.22024 0.93445 0.98309 0.90644 0.89445 1.21333 0.80822 1.00700 0.96552 1.45853 1.07394 1.64149 1.19480 1.20706 0.89991 0.77014 0.82642 1.90685 1.70791 1.48311 1.32426 1.19897 0.91665 1.02630 0.96070 1.19441 1.12866 0.93220 0.97074 1.23797 0.97606 0.96783 0.93875 1.77345 1.24080 1.00434 1.10305 1.48368 1.51322 1.04314 1.12253 1.21797 0.99960 1.02667 0.79311 1.22185 1.00142 0.96304 0.89525 1.61779 1.57020 1.02300 1.02347 1.22539 0.98050 0.97634 0.94429 1.21918 0.96311 0.90832 0.99923 1.19725 0.87169 0.83275 0.86865 1.90478 1.30858 1.69555 1.55477 1.41868 1.31291 1.12992 1.33854 1.19629 1.14279 0.96541 1.12399 0.87978 1.25259 0.96646 0.97165 0.98860 1.69606 1.26043 1.16919 1.41703 0.85931 0.79301 0.78342 0.80720 1.19861 1.21012 1.19964 0.91910 0.91942 0.91640 0.91367 0.91764 0.75315 0.87731 0.88590 0.80034 0.90968 0.89679 0.89416 0.81292 0.92171 0.88614 0.96479 0.89439 0.93174 0.77546 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.41 37.16 0.31 -1.59 16 2 C 0.07 0.73 2.48 -67.71 -0.17 0.57 16 3 H 0.09 0.87 8.04 -51.93 -0.42 0.46 16 4 C 0.13 1.60 4.94 -4.04 -0.02 1.58 16 5 N -0.72 -8.87 5.41 -60.29 -0.33 -9.20 16 6 C 0.51 6.93 7.82 -10.99 -0.09 6.85 16 7 O -0.54 -9.53 16.03 5.56 0.09 -9.44 16 8 C -0.06 -0.65 6.19 -29.03 -0.18 -0.83 16 9 C -0.21 -2.62 4.59 -105.05 -0.48 -3.10 16 10 C 0.07 0.89 11.96 -17.36 -0.21 0.68 16 11 N -0.30 -4.27 12.58 30.63 0.39 -3.88 16 12 N -0.38 -4.32 4.01 -68.16 -0.27 -4.59 16 13 C 0.10 0.68 11.47 59.85 0.69 1.37 16 14 C 0.06 0.69 11.40 -17.22 -0.20 0.49 16 15 N -0.51 -7.46 3.80 -236.33 -0.90 -8.35 16 16 C 0.02 0.31 9.10 60.06 0.55 0.85 16 17 C 0.04 0.70 4.30 -4.98 -0.02 0.68 16 18 C 0.44 10.08 7.43 -10.99 -0.08 10.00 16 19 O -0.58 -14.74 13.95 5.54 0.08 -14.66 16 20 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 29 H 0.06 0.64 6.73 -51.93 -0.35 0.29 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.90 6.68 -51.93 -0.35 0.56 16 34 H 0.41 4.80 8.06 -40.82 -0.33 4.47 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.75 5.79 -51.93 -0.30 1.45 16 44 H 0.02 0.22 6.61 -51.93 -0.34 -0.12 16 45 H 0.09 1.45 6.33 -51.93 -0.33 1.12 16 46 H 0.05 0.80 6.83 -51.93 -0.35 0.44 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -35.38 396.48 -6.64 -42.02 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.17 Total: 14.45 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.14 Total: 9.69 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.45 Total: -63.99 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.38 -6.64 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700452777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.810 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds