Wall clock time and date at job start Tue Mar 31 2020 20:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47229 * 120.00629 * 2 1 3 5 5 N 1.46501 * 109.47122 * 174.93767 * 4 2 1 6 6 C 1.34769 * 119.99909 * 175.21408 * 5 4 2 7 7 O 1.21283 * 120.00104 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99962 * 180.02562 * 6 5 4 9 9 C 1.50708 * 109.47044 * 179.97438 * 8 6 5 10 10 C 1.39867 * 126.03670 * 90.02254 * 9 8 6 11 11 N 1.30841 * 108.20273 * 179.97438 * 10 9 8 12 12 N 1.40080 * 108.20333 * 0.02562 * 11 10 9 13 13 C 1.46497 * 126.03913 * 180.02562 * 12 11 10 14 14 C 1.34956 * 107.92490 * 359.75540 * 12 11 10 15 15 N 1.46904 * 109.46847 * 240.00617 * 2 1 3 16 16 C 1.46900 * 111.00337 * 72.91132 * 15 2 1 17 17 C 1.46899 * 111.00234 * 308.95502 * 15 2 1 18 18 C 1.50693 * 109.47754 * 190.00096 * 17 15 2 19 19 O 1.21300 * 119.99736 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00359 * 180.02562 * 18 17 15 21 21 C 1.37103 * 120.00210 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99412 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00164 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47455 * 59.99969 * 25 23 21 27 27 H 1.48507 * 109.47016 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47435 * 299.99586 * 25 23 21 29 29 H 1.08997 * 109.47222 * 59.99257 * 1 2 3 30 30 H 1.09002 * 109.47192 * 299.99777 * 1 2 3 31 31 H 1.08994 * 109.47533 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46994 * 294.93892 * 4 2 1 33 33 H 1.08998 * 109.47177 * 54.94063 * 4 2 1 34 34 H 0.97001 * 120.00119 * 355.22450 * 5 4 2 35 35 H 1.09002 * 109.46780 * 299.99207 * 8 6 5 36 36 H 1.08997 * 109.47309 * 60.00010 * 8 6 5 37 37 H 1.08006 * 125.90407 * 359.97438 * 10 9 8 38 38 H 1.09000 * 109.47027 * 89.97334 * 13 12 11 39 39 H 1.09002 * 109.47461 * 209.97099 * 13 12 11 40 40 H 1.08996 * 109.47038 * 329.97445 * 13 12 11 41 41 H 1.08007 * 126.12802 * 180.24039 * 14 12 11 42 42 H 1.09003 * 109.46704 * 64.17186 * 16 15 2 43 43 H 1.08994 * 109.47282 * 184.17434 * 16 15 2 44 44 H 1.08998 * 109.46990 * 304.17955 * 16 15 2 45 45 H 1.09004 * 109.47246 * 310.00517 * 17 15 2 46 46 H 1.09001 * 109.46692 * 69.99911 * 17 15 2 47 47 H 0.97001 * 120.00454 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99686 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.4999 -0.8278 1.1897 6 6 4.1810 -1.3431 2.2323 7 8 3.5852 -1.7192 3.2195 8 6 5.6829 -1.4521 2.1714 9 6 6.1951 -2.0558 3.4538 10 6 6.3820 -3.4191 3.7043 11 7 6.8388 -3.5518 4.9232 12 7 6.9565 -2.2753 5.4878 13 6 7.4321 -1.9713 6.8397 14 6 6.5602 -1.3745 4.5643 15 7 2.0196 -0.6924 -1.1996 16 6 1.8151 0.1276 -2.4011 17 6 1.3822 -2.0078 -1.3452 18 6 2.0776 -2.7855 -2.4326 19 8 3.0127 -2.2926 -3.0275 20 7 1.6606 -4.0287 -2.7442 21 6 2.2936 -4.7364 -3.7331 22 1 3.1263 -4.2974 -4.2628 23 6 1.8640 -6.0183 -4.0540 24 7 0.8512 -6.5524 -3.4091 25 14 2.7262 -6.9821 -5.4019 26 1 4.1562 -7.1620 -5.0447 27 1 2.0813 -8.3117 -5.5496 28 1 2.6258 -6.2389 -6.6836 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7526 -0.1580 2.1368 33 1 1.6046 -1.7195 1.2955 34 1 3.9764 -0.5273 0.4001 35 1 5.9673 -2.0863 1.3318 36 1 6.1141 -0.4597 2.0398 37 1 6.1836 -4.2235 3.0113 38 1 8.5125 -1.8287 6.8212 39 1 6.9515 -1.0608 7.1978 40 1 7.1860 -2.7982 7.5058 41 1 6.5366 -0.3020 4.6899 42 1 2.4144 1.0351 -2.3279 43 1 2.1178 -0.4376 -3.2826 44 1 0.7614 0.3938 -2.4843 45 1 1.4557 -2.5534 -0.4044 46 1 0.3324 -1.8758 -1.6075 47 1 0.9130 -4.4231 -2.2682 48 1 0.5511 -7.4472 -3.6334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700452777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:14 Heat of formation + Delta-G solvation = -9.701154 kcal Electronic energy + Delta-G solvation = -29133.437616 eV Core-core repulsion = 25031.544481 eV Total energy + Delta-G solvation = -4101.893135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14040 -40.81852 -40.12868 -38.63348 -35.94450 -35.13408 -34.50770 -33.23809 -32.81112 -31.86362 -29.57107 -29.29853 -27.55562 -26.75908 -26.15628 -24.98979 -22.01581 -21.83948 -21.78045 -20.80181 -20.37975 -19.67265 -18.14419 -17.94171 -17.68552 -16.90463 -16.80510 -16.47231 -16.22345 -16.07433 -15.89291 -15.55798 -15.34076 -15.24319 -14.95230 -14.48294 -14.25029 -14.10179 -13.88558 -13.86002 -13.57703 -13.43967 -13.38279 -13.22197 -12.97719 -12.95181 -12.75134 -12.61807 -12.43253 -12.38874 -12.13931 -12.11706 -11.72876 -11.52501 -11.40107 -10.81981 -10.32840 -10.22271 -9.96435 -9.87599 -9.29269 -9.14206 -8.43525 -5.91769 0.98523 1.41044 1.42536 1.53282 1.71266 1.78074 1.85299 2.10023 2.29765 2.54516 2.86825 3.23838 3.44852 3.66663 3.83601 4.01547 4.05031 4.14921 4.26658 4.31972 4.34369 4.37153 4.41079 4.45671 4.53348 4.56056 4.63576 4.69031 4.69183 4.70509 4.83291 4.89284 4.92009 4.94985 5.05909 5.20997 5.27640 5.31595 5.43562 5.63806 5.68960 5.92081 6.10731 6.19851 6.25226 6.63593 6.74377 6.79645 7.16321 7.46994 7.60811 8.15932 8.73893 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.002768 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.552138 B =10114.328828 C =12263.310937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 H 0.113 0.887 4 C 0.131 3.869 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.588 6.588 8 C -0.054 4.054 9 C -0.236 4.236 10 C 0.042 3.958 11 N -0.340 5.340 12 N -0.382 5.382 13 C 0.094 3.906 14 C 0.071 3.929 15 N -0.520 5.520 16 C 0.026 3.974 17 C 0.057 3.943 18 C 0.445 3.555 19 O -0.607 6.607 20 N -0.579 5.579 21 C -0.328 4.328 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.274 1.274 28 H -0.270 1.270 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.416 0.584 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.181 0.819 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.208 0.792 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.033 0.967 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 17.150 15.543 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 H 0.131 0.869 4 C 0.006 3.994 5 N -0.362 5.362 6 C 0.296 3.704 7 O -0.469 6.469 8 C -0.094 4.094 9 C -0.248 4.248 10 C -0.143 4.143 11 N -0.162 5.162 12 N -0.165 5.165 13 C -0.046 4.046 14 C -0.076 4.076 15 N -0.244 5.244 16 C -0.122 4.122 17 C -0.074 4.074 18 C 0.232 3.768 19 O -0.493 6.493 20 N -0.216 5.216 21 C -0.457 4.457 22 H 0.100 0.900 23 C -0.216 4.216 24 N -0.566 5.566 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.199 1.199 28 H -0.195 1.195 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.253 0.747 35 H 0.124 0.876 36 H 0.149 0.851 37 H 0.198 0.802 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.224 0.776 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.226 0.774 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.248 16.174 16.946 24.521 hybrid contribution -1.235 -0.548 -1.544 2.052 sum 6.013 15.626 15.402 22.750 Atomic orbital electron populations 1.22381 0.95467 1.02697 1.03700 1.22058 0.94303 0.98733 0.88268 0.86946 1.21351 0.80710 0.99819 0.97528 1.45871 1.07551 1.63481 1.19318 1.21218 0.91147 0.76005 0.82022 1.90663 1.71853 1.50268 1.34111 1.19914 0.89521 1.04481 0.95517 1.19703 1.13892 0.92784 0.98441 1.23993 0.98317 0.97916 0.94116 1.77248 1.25480 1.02621 1.10866 1.48778 1.50540 1.03531 1.13619 1.22177 1.01393 1.03829 0.77219 1.22791 0.98301 0.97819 0.88662 1.61724 1.57499 1.01548 1.03669 1.22435 0.99470 0.97622 0.92641 1.21701 0.96401 0.91662 0.97609 1.20728 0.86459 0.82604 0.87018 1.90459 1.32136 1.70035 1.56640 1.41971 1.31682 1.13908 1.34040 1.19619 1.14696 0.97621 1.13777 0.90018 1.26036 0.97180 0.97565 1.00770 1.69680 1.26848 1.17309 1.42723 0.85010 0.78223 0.77232 0.78031 1.19686 1.19861 1.19519 0.91461 0.89887 0.92783 0.90361 0.93926 0.74742 0.87577 0.85103 0.80216 0.89172 0.86799 0.89687 0.77556 0.89741 0.92779 0.94828 0.88897 0.91594 0.77406 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.41 71.98 0.61 -2.62 16 2 C 0.07 1.48 2.48 44.91 0.11 1.59 16 3 H 0.11 1.77 8.04 -2.39 -0.02 1.75 16 4 C 0.13 2.98 4.94 86.38 0.43 3.40 16 5 N -0.71 -16.53 5.41 -463.07 -2.51 -19.03 16 6 C 0.51 13.33 7.82 87.66 0.69 14.02 16 7 O -0.59 -20.48 16.03 -3.04 -0.05 -20.53 16 8 C -0.05 -1.07 6.19 29.11 0.18 -0.89 16 9 C -0.24 -5.62 4.59 -20.14 -0.09 -5.71 16 10 C 0.04 1.17 11.96 85.23 1.02 2.19 16 11 N -0.34 -9.83 12.58 -57.02 -0.72 -10.55 16 12 N -0.38 -8.27 4.01 -369.57 -1.48 -9.75 16 13 C 0.09 1.05 11.47 127.77 1.47 2.52 16 14 C 0.07 1.39 11.40 83.54 0.95 2.35 16 15 N -0.52 -14.30 3.80 -901.62 -3.43 -17.73 16 16 C 0.03 0.71 9.10 127.69 1.16 1.87 16 17 C 0.06 1.92 4.30 85.55 0.37 2.29 16 18 C 0.44 20.49 7.43 87.66 0.65 21.14 16 19 O -0.61 -31.54 13.95 -3.09 -0.04 -31.59 16 20 N -0.58 -29.63 5.29 -306.98 -1.62 -31.25 16 21 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H 0.07 1.15 6.73 -2.39 -0.02 1.13 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.08 6.54 -2.39 -0.02 1.07 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.17 6.68 -2.39 -0.02 1.15 16 34 H 0.42 8.91 8.06 -92.71 -0.75 8.17 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.96 5.79 -2.39 -0.01 1.94 16 44 H 0.03 0.79 6.61 -2.39 -0.02 0.78 16 45 H 0.09 3.05 6.33 -2.38 -0.02 3.03 16 46 H 0.07 2.02 6.83 -2.39 -0.02 2.00 16 47 H 0.39 19.53 7.90 -92.71 -0.73 18.80 16 48 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -79.26 396.48 0.80 -78.46 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.48 Total: 43.12 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 8.82 Total: 24.07 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -9.47 Total: -138.79 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.09 Total: -52.11 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -79.26 0.80 -78.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700452777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.757 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds