Wall clock time and date at job start Tue Mar 31 2020 20:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99371 * 2 1 3 5 5 N 1.46496 * 109.47194 * 185.00163 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 C 1.39864 * 126.04218 * 269.69185 * 10 9 8 12 12 N 1.30840 * 108.20539 * 179.81957 * 11 10 9 13 13 N 1.40087 * 108.20295 * 0.43272 * 12 11 10 14 14 H 0.97002 * 126.03574 * 179.69595 * 13 12 11 15 15 C 1.34953 * 107.92453 * 359.72394 * 13 12 11 16 16 N 1.46908 * 109.46919 * 119.99703 * 2 1 3 17 17 C 1.46900 * 110.99948 * 58.95008 * 16 2 1 18 18 C 1.46896 * 110.99626 * 294.99832 * 16 2 1 19 19 C 1.50699 * 109.46945 * 189.99911 * 18 16 2 20 20 O 1.21290 * 119.99852 * 359.97438 * 19 18 16 21 21 N 1.34775 * 120.00246 * 180.02562 * 19 18 16 22 22 C 1.37097 * 120.00164 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99943 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00115 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99721 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47395 * 59.99978 * 26 24 22 28 28 H 1.48497 * 109.47211 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47180 * 299.99966 * 26 24 22 30 30 H 1.09000 * 109.46950 * 60.00129 * 1 2 3 31 31 H 1.08994 * 109.47556 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 300.00931 * 1 2 3 33 33 H 1.09002 * 109.47045 * 65.00290 * 4 2 1 34 34 H 1.09001 * 109.47375 * 305.00215 * 4 2 1 35 35 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 39 39 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 40 40 H 1.07997 * 125.89612 * 359.97438 * 11 10 9 41 41 H 1.07998 * 126.12604 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47097 * 60.00137 * 17 16 2 43 43 H 1.08996 * 109.46862 * 179.97438 * 17 16 2 44 44 H 1.09003 * 109.47192 * 300.00389 * 17 16 2 45 45 H 1.09000 * 109.47785 * 310.00057 * 18 16 2 46 46 H 1.09007 * 109.47574 * 70.00207 * 18 16 2 47 47 H 0.96999 * 120.00095 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99808 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4295 -2.1905 7 8 3.5699 -1.8845 -3.1392 8 6 5.6748 -1.5381 -2.1298 9 6 6.1848 -2.2594 -3.3791 10 6 7.6867 -2.3676 -3.3187 11 6 8.5998 -1.4374 -3.8260 12 7 9.8082 -1.8754 -3.5812 13 7 9.7020 -3.1049 -2.9182 14 1 10.4409 -3.6578 -2.6194 15 6 8.3902 -3.3846 -2.7692 16 7 2.0196 -0.6925 1.1995 17 6 1.5282 -2.0760 1.2462 18 6 1.6487 0.0393 2.4180 19 6 2.3678 -0.5569 3.6006 20 8 3.1154 -1.4991 3.4438 21 7 2.1794 -0.0439 4.8326 22 6 2.8332 -0.5867 5.9085 23 1 3.4995 -1.4251 5.7687 24 6 2.6386 -0.0581 7.1787 25 7 1.8282 0.9624 7.3487 26 14 3.5300 -0.7972 8.6445 27 1 4.9966 -0.6958 8.4346 28 1 3.1546 -0.0579 9.8764 29 1 3.1480 -2.2250 8.7877 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.7516 -0.1585 -2.1369 34 1 1.6053 -1.7199 -1.2950 35 1 3.9824 -0.4629 -0.4315 36 1 5.9628 -2.1009 -1.2419 37 1 6.1098 -0.5397 -2.0841 38 1 5.7499 -3.2578 -3.4252 39 1 5.8968 -1.6964 -4.2667 40 1 8.3505 -0.5155 -4.3302 41 1 7.9761 -4.2625 -2.2958 42 1 1.8761 -2.6151 0.3649 43 1 1.9059 -2.5657 2.1437 44 1 0.4383 -2.0741 1.2641 45 1 1.9297 1.0872 2.3125 46 1 0.5721 -0.0343 2.5726 47 1 1.5813 0.7093 4.9581 48 1 1.6921 1.3311 8.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700493219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:39 Heat of formation + Delta-G solvation = 2.091396 kcal Electronic energy + Delta-G solvation = -28559.713423 eV Core-core repulsion = 24458.331652 eV Total energy + Delta-G solvation = -4101.381772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41587 -39.81672 -38.84708 -37.32226 -34.38520 -34.05295 -33.79760 -31.56731 -31.30253 -30.98735 -29.39727 -27.95124 -26.50705 -25.39394 -24.22305 -23.51983 -22.21789 -20.39221 -20.17473 -19.76992 -19.09087 -18.03106 -17.86082 -16.88604 -16.53427 -16.06247 -15.67867 -15.25843 -14.91256 -14.80941 -14.69587 -14.65007 -14.12589 -13.92671 -13.81034 -13.49924 -13.26827 -13.01664 -12.97671 -12.83115 -12.38450 -12.27386 -12.19384 -11.81463 -11.77607 -11.47358 -11.26974 -11.22638 -11.21275 -10.93049 -10.75889 -10.73603 -10.46822 -10.24164 -9.91480 -9.81140 -9.49338 -8.93848 -8.72194 -8.49640 -8.00901 -7.88369 -6.44503 -3.85334 1.64365 2.50393 2.65702 2.74149 3.17397 3.23587 3.27346 3.32262 3.87412 3.94856 4.22127 4.52621 4.65881 4.71082 4.79705 4.95682 5.01784 5.11310 5.12342 5.20046 5.24684 5.29840 5.39506 5.45413 5.54298 5.55095 5.60351 5.61873 5.74607 5.78291 5.88978 5.91962 5.98645 6.03169 6.09489 6.16784 6.25176 6.39190 6.52589 6.57342 6.99326 7.21045 7.33100 7.38695 7.52157 7.66389 8.03254 8.33528 8.58856 9.15306 9.51700 10.03396 10.73116 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.002314 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.240710 B =12099.576593 C =14454.545397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.088 0.912 4 C 0.131 3.869 5 N -0.715 5.715 6 C 0.511 3.489 7 O -0.555 6.555 8 C -0.135 4.135 9 C -0.023 4.023 10 C -0.235 4.235 11 C 0.056 3.944 12 N -0.299 5.299 13 N -0.479 5.479 14 H 0.439 0.561 15 C 0.062 3.938 16 N -0.510 5.510 17 C 0.017 3.983 18 C 0.044 3.956 19 C 0.443 3.557 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.019 0.981 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -2.566 -19.007 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.006 3.994 5 N -0.367 5.367 6 C 0.298 3.702 7 O -0.434 6.434 8 C -0.176 4.176 9 C -0.062 4.062 10 C -0.247 4.247 11 C -0.131 4.131 12 N -0.121 5.121 13 N -0.187 5.187 14 H 0.282 0.718 15 C -0.086 4.086 16 N -0.234 5.234 17 C -0.131 4.131 18 C -0.087 4.087 19 C 0.229 3.771 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.403 -3.190 -19.738 20.994 hybrid contribution -1.240 -0.009 1.717 2.118 sum 5.163 -3.200 -18.021 19.017 Atomic orbital electron populations 1.22406 0.96701 1.02803 1.02656 1.22053 0.93441 0.98659 0.90450 0.89391 1.21350 0.80670 1.00765 0.96571 1.45914 1.07559 1.59445 1.23782 1.20739 0.90204 0.77273 0.82025 1.90674 1.70648 1.48323 1.33742 1.21683 0.91585 1.03382 1.00914 1.19570 0.88046 1.01549 0.97031 1.20178 0.96894 0.97259 1.10364 1.23864 0.89560 1.00126 0.99567 1.77328 1.22584 0.96076 1.16150 1.46313 1.06820 1.18144 1.47447 0.71766 1.22482 0.84435 1.00723 1.00933 1.61824 1.58897 1.02478 1.00168 1.22596 0.96737 0.89462 1.04313 1.21876 0.98129 0.98418 0.90275 1.19734 0.86690 0.86912 0.83770 1.90482 1.40820 1.30181 1.84750 1.41865 1.41507 1.31179 1.05517 1.19631 1.23491 1.14847 0.84890 0.88000 1.25257 0.97313 0.96331 0.99027 1.69602 1.36590 1.23850 1.24271 0.85927 0.79628 0.78893 0.79829 1.19898 1.20992 1.19946 0.91924 0.91846 0.91714 0.91409 0.91537 0.75183 0.88774 0.88964 0.90699 0.90494 0.80034 0.80604 0.92081 0.88670 0.96213 0.89488 0.93216 0.77525 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.50 37.16 0.32 -1.55 16 2 C 0.06 0.71 2.50 -67.71 -0.17 0.54 16 3 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 4 C 0.13 1.48 4.69 -4.05 -0.02 1.46 16 5 N -0.72 -8.22 5.39 -60.30 -0.32 -8.54 16 6 C 0.51 6.14 7.83 -10.98 -0.09 6.05 16 7 O -0.56 -8.43 15.98 5.56 0.09 -8.34 16 8 C -0.14 -1.24 5.68 -27.88 -0.16 -1.40 16 9 C -0.02 -0.21 4.99 -27.88 -0.14 -0.34 16 10 C -0.24 -2.08 5.35 -105.05 -0.56 -2.64 16 11 C 0.06 0.52 11.96 -17.37 -0.21 0.31 16 12 N -0.30 -3.15 12.70 30.62 0.39 -2.76 16 13 N -0.48 -3.82 7.36 30.45 0.22 -3.60 16 14 H 0.44 2.16 8.96 -182.61 -1.64 0.52 16 15 C 0.06 0.47 11.90 -17.22 -0.20 0.27 16 16 N -0.51 -7.44 3.93 -236.32 -0.93 -8.36 16 17 C 0.02 0.25 8.46 60.06 0.51 0.76 16 18 C 0.04 0.72 4.89 -4.98 -0.02 0.70 16 19 C 0.44 9.86 7.48 -10.99 -0.08 9.78 16 20 O -0.58 -14.65 13.91 5.55 0.08 -14.57 16 21 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 22 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 23 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.66 6.38 -51.93 -0.33 0.33 16 32 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.83 6.70 -51.93 -0.35 0.48 16 35 H 0.41 4.68 8.14 -40.82 -0.33 4.35 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 43 H 0.09 1.80 5.82 -51.93 -0.30 1.50 16 44 H 0.02 0.27 6.28 -51.93 -0.33 -0.05 16 45 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 46 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 47 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -33.66 394.58 -8.32 -41.98 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -8.37 Total: 13.56 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.07 Total: 6.18 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.03 Total: -60.39 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.66 -8.32 -41.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700493219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.071 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds