Wall clock time and date at job start Tue Mar 31 2020 20:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99371 * 2 1 3 5 5 N 1.46496 * 109.47194 * 185.00163 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 C 1.39864 * 126.04218 * 269.69185 * 10 9 8 12 12 N 1.30840 * 108.20539 * 179.81957 * 11 10 9 13 13 N 1.40087 * 108.20295 * 0.43272 * 12 11 10 14 14 H 0.97002 * 126.03574 * 179.69595 * 13 12 11 15 15 C 1.34953 * 107.92453 * 359.72394 * 13 12 11 16 16 N 1.46908 * 109.46919 * 119.99703 * 2 1 3 17 17 C 1.46900 * 110.99948 * 58.95008 * 16 2 1 18 18 C 1.46896 * 110.99626 * 294.99832 * 16 2 1 19 19 C 1.50699 * 109.46945 * 189.99911 * 18 16 2 20 20 O 1.21290 * 119.99852 * 359.97438 * 19 18 16 21 21 N 1.34775 * 120.00246 * 180.02562 * 19 18 16 22 22 C 1.37097 * 120.00164 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99943 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00115 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99721 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47395 * 59.99978 * 26 24 22 28 28 H 1.48497 * 109.47211 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47180 * 299.99966 * 26 24 22 30 30 H 1.09000 * 109.46950 * 60.00129 * 1 2 3 31 31 H 1.08994 * 109.47556 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 300.00931 * 1 2 3 33 33 H 1.09002 * 109.47045 * 65.00290 * 4 2 1 34 34 H 1.09001 * 109.47375 * 305.00215 * 4 2 1 35 35 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 39 39 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 40 40 H 1.07997 * 125.89612 * 359.97438 * 11 10 9 41 41 H 1.07998 * 126.12604 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47097 * 60.00137 * 17 16 2 43 43 H 1.08996 * 109.46862 * 179.97438 * 17 16 2 44 44 H 1.09003 * 109.47192 * 300.00389 * 17 16 2 45 45 H 1.09000 * 109.47785 * 310.00057 * 18 16 2 46 46 H 1.09007 * 109.47574 * 70.00207 * 18 16 2 47 47 H 0.96999 * 120.00095 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99808 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4295 -2.1905 7 8 3.5699 -1.8845 -3.1392 8 6 5.6748 -1.5381 -2.1298 9 6 6.1848 -2.2594 -3.3791 10 6 7.6867 -2.3676 -3.3187 11 6 8.5998 -1.4374 -3.8260 12 7 9.8082 -1.8754 -3.5812 13 7 9.7020 -3.1049 -2.9182 14 1 10.4409 -3.6578 -2.6194 15 6 8.3902 -3.3846 -2.7692 16 7 2.0196 -0.6925 1.1995 17 6 1.5282 -2.0760 1.2462 18 6 1.6487 0.0393 2.4180 19 6 2.3678 -0.5569 3.6006 20 8 3.1154 -1.4991 3.4438 21 7 2.1794 -0.0439 4.8326 22 6 2.8332 -0.5867 5.9085 23 1 3.4995 -1.4251 5.7687 24 6 2.6386 -0.0581 7.1787 25 7 1.8282 0.9624 7.3487 26 14 3.5300 -0.7972 8.6445 27 1 4.9966 -0.6958 8.4346 28 1 3.1546 -0.0579 9.8764 29 1 3.1480 -2.2250 8.7877 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.7516 -0.1585 -2.1369 34 1 1.6053 -1.7199 -1.2950 35 1 3.9824 -0.4629 -0.4315 36 1 5.9628 -2.1009 -1.2419 37 1 6.1098 -0.5397 -2.0841 38 1 5.7499 -3.2578 -3.4252 39 1 5.8968 -1.6964 -4.2667 40 1 8.3505 -0.5155 -4.3302 41 1 7.9761 -4.2625 -2.2958 42 1 1.8761 -2.6151 0.3649 43 1 1.9059 -2.5657 2.1437 44 1 0.4383 -2.0741 1.2641 45 1 1.9297 1.0872 2.3125 46 1 0.5721 -0.0343 2.5726 47 1 1.5813 0.7093 4.9581 48 1 1.6921 1.3311 8.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700493219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:38 Heat of formation + Delta-G solvation = -23.898408 kcal Electronic energy + Delta-G solvation = -28560.840426 eV Core-core repulsion = 24458.331652 eV Total energy + Delta-G solvation = -4102.508774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.06349 -40.87734 -40.24979 -38.72294 -35.95179 -35.17966 -34.83719 -33.23195 -32.25894 -32.01765 -30.12711 -29.33357 -27.37611 -26.98453 -25.47292 -24.53574 -22.87973 -21.38769 -21.12923 -20.76845 -20.51015 -19.76755 -18.68762 -18.05989 -17.61475 -17.08871 -16.88721 -16.51496 -16.30088 -16.20406 -15.75561 -15.51389 -15.34211 -15.11945 -14.90465 -14.67677 -14.43058 -14.16319 -13.82769 -13.65540 -13.58962 -13.44280 -13.16609 -13.05809 -12.93684 -12.84089 -12.72855 -12.41973 -12.35973 -12.23102 -12.11421 -11.98585 -11.71733 -11.45259 -11.40251 -10.79818 -10.57468 -10.22569 -9.95520 -9.90044 -9.38599 -9.14538 -8.43100 -5.90834 1.01379 1.41159 1.43113 1.53284 1.79591 1.83139 2.11082 2.11784 2.29857 2.44005 2.81798 3.24520 3.48840 3.79660 3.84724 4.02921 4.11279 4.12058 4.29773 4.33723 4.34310 4.38236 4.41212 4.57284 4.60820 4.63670 4.68603 4.70603 4.75920 4.82057 4.88131 4.90772 4.96782 5.05262 5.23230 5.31884 5.33699 5.40259 5.44394 5.61486 5.74929 5.91503 6.10072 6.23705 6.47438 6.65412 6.73097 6.75107 7.17691 7.40243 7.62614 8.18534 8.74045 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.002314 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.240710 B =12099.576593 C =14454.545397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.104 0.896 4 C 0.133 3.867 5 N -0.713 5.713 6 C 0.509 3.491 7 O -0.589 6.589 8 C -0.128 4.128 9 C -0.013 4.013 10 C -0.251 4.251 11 C 0.049 3.951 12 N -0.335 5.335 13 N -0.475 5.475 14 H 0.450 0.550 15 C 0.068 3.932 16 N -0.520 5.520 17 C 0.026 3.974 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.577 5.577 22 C -0.328 4.328 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.198 0.802 41 H 0.204 0.796 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.033 0.967 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -1.968 -19.319 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.038 4.038 3 H 0.122 0.878 4 C 0.009 3.991 5 N -0.364 5.364 6 C 0.297 3.703 7 O -0.471 6.471 8 C -0.168 4.168 9 C -0.052 4.052 10 C -0.262 4.262 11 C -0.137 4.137 12 N -0.158 5.158 13 N -0.185 5.185 14 H 0.296 0.704 15 C -0.080 4.080 16 N -0.244 5.244 17 C -0.122 4.122 18 C -0.073 4.073 19 C 0.230 3.770 20 O -0.497 6.497 21 N -0.215 5.215 22 C -0.458 4.458 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.198 1.198 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.215 0.785 41 H 0.221 0.779 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.130 0.870 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.162 -2.574 -20.054 21.137 hybrid contribution -1.171 -0.240 1.732 2.105 sum 4.990 -2.814 -18.322 19.197 Atomic orbital electron populations 1.22374 0.95377 1.02771 1.03686 1.22093 0.94436 0.98831 0.88437 0.87797 1.21351 0.80526 1.00280 0.96990 1.45962 1.07767 1.59048 1.23630 1.21188 0.91228 0.76453 0.81406 1.90658 1.71535 1.49825 1.35038 1.21674 0.89550 1.04350 1.01194 1.19426 0.88195 1.00949 0.96637 1.20222 0.96679 0.97905 1.11440 1.24214 0.89359 1.00806 0.99336 1.77274 1.23440 0.97461 1.17644 1.46369 1.07518 1.17665 1.46904 0.70410 1.22948 0.84180 1.01066 0.99805 1.61752 1.59739 1.02234 1.00677 1.22394 0.97393 0.89845 1.02529 1.21737 0.98115 0.99117 0.88357 1.20802 0.85704 0.85868 0.84577 1.90467 1.42208 1.31599 1.85467 1.41941 1.41981 1.31661 1.05884 1.19586 1.24484 1.15185 0.86537 0.90314 1.25982 0.97829 0.96595 1.00953 1.69664 1.37184 1.24428 1.25008 0.85039 0.78459 0.78170 0.77000 1.19730 1.19756 1.19849 0.89880 0.92417 0.91708 0.90411 0.92746 0.74978 0.88279 0.87504 0.91428 0.91107 0.78495 0.77912 0.91399 0.92700 0.94845 0.87014 0.91494 0.77122 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.50 71.98 0.61 -2.50 16 2 C 0.07 1.39 2.50 44.91 0.11 1.50 16 3 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 4 C 0.13 2.75 4.69 86.38 0.40 3.16 16 5 N -0.71 -15.36 5.39 -463.07 -2.50 -17.85 16 6 C 0.51 11.73 7.83 87.66 0.69 12.42 16 7 O -0.59 -17.57 15.98 -3.02 -0.05 -17.62 16 8 C -0.13 -2.19 5.68 29.85 0.17 -2.02 16 9 C -0.01 -0.22 4.99 29.85 0.15 -0.07 16 10 C -0.25 -4.16 5.35 -20.14 -0.11 -4.27 16 11 C 0.05 0.87 11.96 85.23 1.02 1.89 16 12 N -0.34 -6.86 12.70 -57.03 -0.72 -7.58 16 13 N -0.48 -7.07 7.36 -57.59 -0.42 -7.49 16 14 H 0.45 3.96 8.96 -213.33 -1.91 2.05 16 15 C 0.07 0.94 11.90 83.54 0.99 1.94 16 16 N -0.52 -14.30 3.93 -901.59 -3.54 -17.85 16 17 C 0.03 0.79 8.46 127.69 1.08 1.87 16 18 C 0.06 1.78 4.89 85.56 0.42 2.20 16 19 C 0.44 19.69 7.48 87.66 0.66 20.35 16 20 O -0.61 -31.57 13.91 -3.06 -0.04 -31.61 16 21 N -0.58 -28.34 5.29 -306.98 -1.62 -29.96 16 22 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -48.82 13.05 21.67 0.28 -48.54 16 26 Si 0.99 42.18 29.55 68.60 2.03 44.20 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.06 6.38 -2.39 -0.02 1.05 16 32 H 0.06 1.13 6.75 -2.39 -0.02 1.11 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 35 H 0.41 8.74 8.14 -92.70 -0.75 7.99 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 40 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.07 1.90 6.44 -2.38 -0.02 1.89 16 43 H 0.05 2.11 5.82 -2.39 -0.01 2.09 16 44 H 0.03 0.89 6.28 -2.39 -0.01 0.87 16 45 H 0.11 2.95 8.00 -2.39 -0.02 2.93 16 46 H 0.07 1.88 6.94 -2.38 -0.02 1.86 16 47 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -73.32 394.58 -1.50 -74.82 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -2.38 Total: 40.56 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.47 Total: 18.92 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -8.53 Total: -129.28 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.09 Total: -49.23 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.32 -1.50 -74.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700493219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.918 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds