Wall clock time and date at job start Tue Mar 31 2020 20:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47216 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47216 * 180.02562 * 9 8 6 11 11 C 1.39869 * 126.04200 * 269.68956 * 10 9 8 12 12 N 1.30835 * 108.20668 * 179.82175 * 11 10 9 13 13 N 1.40082 * 108.20235 * 0.43556 * 12 11 10 14 14 H 0.96996 * 126.04335 * 179.70074 * 13 12 11 15 15 C 1.34949 * 107.92871 * 359.72330 * 13 12 11 16 16 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 17 17 C 1.46901 * 110.99679 * 306.04509 * 16 2 1 18 18 C 1.46893 * 111.00143 * 69.99620 * 16 2 1 19 19 C 1.50706 * 109.47176 * 169.99759 * 18 16 2 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46883 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47233 * 120.00270 * 26 24 22 29 29 H 1.48501 * 109.47364 * 240.00343 * 26 24 22 30 30 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 34 34 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 35 35 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 37 37 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 38 38 H 1.09006 * 109.46718 * 300.00201 * 9 8 6 39 39 H 1.09006 * 109.47272 * 59.99716 * 9 8 6 40 40 H 1.08004 * 125.89319 * 359.97438 * 11 10 9 41 41 H 1.07998 * 126.13091 * 180.02562 * 15 13 12 42 42 H 1.09007 * 109.47214 * 183.95845 * 17 16 2 43 43 H 1.09002 * 109.47259 * 303.95383 * 17 16 2 44 44 H 1.08999 * 109.47697 * 63.95865 * 17 16 2 45 45 H 1.09001 * 109.46739 * 50.00168 * 18 16 2 46 46 H 1.09000 * 109.47767 * 290.00427 * 18 16 2 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1851 -2.2572 3.3802 10 6 7.6870 -2.3643 3.3204 11 6 8.4152 -3.4177 2.7579 12 7 9.6891 -3.1519 2.8928 13 7 9.8121 -1.9238 3.5553 14 1 10.6435 -1.4838 3.7920 15 6 8.5696 -1.4611 3.8067 16 7 2.0196 -0.6925 -1.1995 17 6 1.4342 -2.0354 -1.3078 18 6 1.7528 0.0972 -2.4090 19 6 2.4773 -0.5163 -3.5794 20 8 3.1495 -1.5136 -3.4215 21 7 2.3785 0.0432 -4.8016 22 6 3.0372 -0.5152 -5.8664 23 1 3.6350 -1.4037 -5.7259 24 6 2.9348 0.0612 -7.1265 25 7 2.2071 1.1420 -7.2975 26 14 3.8329 -0.6992 -8.5773 27 1 4.5781 -1.9009 -8.1234 28 1 2.8490 -1.0913 -9.6182 29 1 4.7851 0.2897 -9.1436 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4315 36 1 5.9637 -2.0989 1.2435 37 1 6.1093 -0.5372 2.0849 38 1 5.8963 -1.6945 4.2680 39 1 5.7507 -3.2559 3.4259 40 1 7.9978 -4.2974 2.2905 41 1 8.3236 -0.5356 4.3060 42 1 1.8663 -2.5522 -2.1648 43 1 1.6465 -2.5987 -0.3991 44 1 0.3555 -1.9521 -1.4399 45 1 2.1024 1.1189 -2.2603 46 1 0.6813 0.1053 -2.6087 47 1 1.8413 0.8409 -4.9277 48 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700493220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:41 Heat of formation + Delta-G solvation = 1.839286 kcal Electronic energy + Delta-G solvation = -28566.796901 eV Core-core repulsion = 24465.404197 eV Total energy + Delta-G solvation = -4101.392704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41030 -39.79300 -38.83646 -37.31282 -34.38671 -34.04620 -33.79325 -31.56232 -31.30141 -30.99122 -29.38943 -27.89584 -26.54752 -25.39587 -24.20882 -23.50897 -22.20366 -20.38281 -20.16303 -19.75942 -19.10972 -18.03753 -17.85934 -16.88523 -16.48079 -16.08458 -15.66823 -15.25224 -14.90164 -14.81261 -14.68333 -14.64601 -14.10550 -13.90745 -13.80616 -13.47237 -13.26027 -13.06789 -13.00163 -12.64081 -12.51093 -12.30752 -12.14373 -11.81849 -11.75091 -11.45744 -11.26619 -11.24091 -11.22377 -10.94574 -10.75210 -10.73203 -10.35900 -10.24433 -9.90194 -9.80176 -9.50603 -8.92425 -8.71968 -8.49773 -8.00252 -7.87354 -6.43981 -3.84679 1.64296 2.52044 2.65895 2.75197 3.14617 3.25576 3.32128 3.33826 3.87988 3.94801 4.22895 4.53580 4.64187 4.72414 4.81516 4.94809 4.99822 5.10852 5.15596 5.20400 5.25131 5.31132 5.40435 5.45919 5.51270 5.56680 5.61099 5.64405 5.75689 5.77899 5.88960 5.92387 5.98777 6.04166 6.10429 6.14822 6.25677 6.40399 6.53901 6.59407 6.99425 7.21596 7.33654 7.39983 7.53421 7.67613 8.04519 8.34657 8.59537 9.16351 9.52469 10.04094 10.73795 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.002364 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.407533 B =11839.427299 C =14274.738381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 H 0.087 0.913 4 C 0.132 3.868 5 N -0.714 5.714 6 C 0.511 3.489 7 O -0.556 6.556 8 C -0.135 4.135 9 C -0.023 4.023 10 C -0.234 4.234 11 C 0.058 3.942 12 N -0.298 5.298 13 N -0.480 5.480 14 H 0.438 0.562 15 C 0.059 3.941 16 N -0.510 5.510 17 C 0.017 3.983 18 C 0.044 3.956 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.184 0.816 41 H 0.175 0.825 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 0.718 20.758 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.105 0.895 4 C 0.008 3.992 5 N -0.366 5.366 6 C 0.298 3.702 7 O -0.434 6.434 8 C -0.176 4.176 9 C -0.062 4.062 10 C -0.245 4.245 11 C -0.129 4.129 12 N -0.120 5.120 13 N -0.188 5.188 14 H 0.282 0.718 15 C -0.089 4.089 16 N -0.234 5.234 17 C -0.130 4.130 18 C -0.087 4.087 19 C 0.229 3.771 20 O -0.461 6.461 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.201 0.799 41 H 0.193 0.807 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.990 -0.638 21.164 22.005 hybrid contribution -1.096 1.162 -1.190 1.992 sum 4.894 0.524 19.974 20.571 Atomic orbital electron populations 1.22402 0.96645 1.02842 1.02558 1.22046 0.93468 0.98517 0.90610 0.89485 1.21335 0.80666 1.00758 0.96482 1.45901 1.07561 1.59452 1.23701 1.20732 0.90203 0.77264 0.82037 1.90675 1.70656 1.48299 1.33806 1.21680 0.91592 1.03133 1.01162 1.19575 0.88084 1.01752 0.96801 1.20189 0.96741 0.97190 1.10423 1.23913 0.90171 0.99708 0.99139 1.77349 1.19779 0.98095 1.16759 1.46309 1.07600 1.17704 1.47215 0.71843 1.22428 0.84966 1.00143 1.01359 1.61803 1.58205 1.02812 1.00558 1.22594 0.96320 0.90247 1.03870 1.21889 0.98648 0.97682 0.90473 1.19737 0.86462 0.87135 0.83749 1.90488 1.44340 1.27098 1.84173 1.41876 1.44618 1.27111 1.06553 1.19734 1.26100 1.10873 0.85962 0.87870 1.25257 0.97551 0.96183 0.98997 1.69617 1.39946 1.20325 1.24471 0.85817 0.78979 0.79072 0.80585 1.19200 1.20800 1.20763 0.91970 0.91826 0.91765 0.91461 0.91562 0.75223 0.88554 0.89188 0.90806 0.90374 0.79904 0.80740 0.88592 0.92158 0.96159 0.89514 0.93269 0.77547 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 8.44 37.16 0.31 -1.53 16 2 C 0.06 0.70 2.47 -67.71 -0.17 0.53 16 3 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 4 C 0.13 1.50 4.85 -4.04 -0.02 1.48 16 5 N -0.71 -8.28 5.39 -60.29 -0.32 -8.60 16 6 C 0.51 6.19 7.83 -10.99 -0.09 6.10 16 7 O -0.56 -8.48 15.98 5.55 0.09 -8.39 16 8 C -0.14 -1.26 5.68 -27.88 -0.16 -1.42 16 9 C -0.02 -0.21 4.99 -27.88 -0.14 -0.35 16 10 C -0.23 -2.08 5.35 -105.05 -0.56 -2.64 16 11 C 0.06 0.57 11.96 -17.37 -0.21 0.36 16 12 N -0.30 -3.24 12.70 30.62 0.39 -2.85 16 13 N -0.48 -3.75 7.36 30.45 0.22 -3.53 16 14 H 0.44 2.02 8.96 -182.62 -1.64 0.39 16 15 C 0.06 0.42 11.90 -17.22 -0.20 0.22 16 16 N -0.51 -7.46 3.89 -236.33 -0.92 -8.37 16 17 C 0.02 0.27 8.32 60.07 0.50 0.77 16 18 C 0.04 0.72 5.02 -4.98 -0.02 0.70 16 19 C 0.44 9.88 7.51 -10.98 -0.08 9.80 16 20 O -0.58 -14.69 13.88 5.54 0.08 -14.61 16 21 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 22 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 26 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.66 6.91 -51.93 -0.36 0.30 16 32 H 0.06 0.67 6.42 -51.93 -0.33 0.33 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.83 6.71 -51.92 -0.35 0.48 16 35 H 0.41 4.72 8.14 -40.82 -0.33 4.39 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.10 1.83 5.88 -51.92 -0.31 1.52 16 43 H 0.06 0.86 6.40 -51.93 -0.33 0.52 16 44 H 0.02 0.28 6.46 -51.93 -0.34 -0.05 16 45 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 46 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 47 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -33.93 394.97 -8.33 -42.27 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.38 Total: 13.38 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.08 Total: 6.28 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.03 Total: -60.59 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.93 -8.33 -42.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700493220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.109 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds