Wall clock time and date at job start Tue Mar 31 2020 20:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47216 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47216 * 180.02562 * 9 8 6 11 11 C 1.39869 * 126.04200 * 269.68956 * 10 9 8 12 12 N 1.30835 * 108.20668 * 179.82175 * 11 10 9 13 13 N 1.40082 * 108.20235 * 0.43556 * 12 11 10 14 14 H 0.96996 * 126.04335 * 179.70074 * 13 12 11 15 15 C 1.34949 * 107.92871 * 359.72330 * 13 12 11 16 16 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 17 17 C 1.46901 * 110.99679 * 306.04509 * 16 2 1 18 18 C 1.46893 * 111.00143 * 69.99620 * 16 2 1 19 19 C 1.50706 * 109.47176 * 169.99759 * 18 16 2 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46883 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47233 * 120.00270 * 26 24 22 29 29 H 1.48501 * 109.47364 * 240.00343 * 26 24 22 30 30 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 34 34 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 35 35 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 37 37 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 38 38 H 1.09006 * 109.46718 * 300.00201 * 9 8 6 39 39 H 1.09006 * 109.47272 * 59.99716 * 9 8 6 40 40 H 1.08004 * 125.89319 * 359.97438 * 11 10 9 41 41 H 1.07998 * 126.13091 * 180.02562 * 15 13 12 42 42 H 1.09007 * 109.47214 * 183.95845 * 17 16 2 43 43 H 1.09002 * 109.47259 * 303.95383 * 17 16 2 44 44 H 1.08999 * 109.47697 * 63.95865 * 17 16 2 45 45 H 1.09001 * 109.46739 * 50.00168 * 18 16 2 46 46 H 1.09000 * 109.47767 * 290.00427 * 18 16 2 47 47 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1851 -2.2572 3.3802 10 6 7.6870 -2.3643 3.3204 11 6 8.4152 -3.4177 2.7579 12 7 9.6891 -3.1519 2.8928 13 7 9.8121 -1.9238 3.5553 14 1 10.6435 -1.4838 3.7920 15 6 8.5696 -1.4611 3.8067 16 7 2.0196 -0.6925 -1.1995 17 6 1.4342 -2.0354 -1.3078 18 6 1.7528 0.0972 -2.4090 19 6 2.4773 -0.5163 -3.5794 20 8 3.1495 -1.5136 -3.4215 21 7 2.3785 0.0432 -4.8016 22 6 3.0372 -0.5152 -5.8664 23 1 3.6350 -1.4037 -5.7259 24 6 2.9348 0.0612 -7.1265 25 7 2.2071 1.1420 -7.2975 26 14 3.8329 -0.6992 -8.5773 27 1 4.5781 -1.9009 -8.1234 28 1 2.8490 -1.0913 -9.6182 29 1 4.7851 0.2897 -9.1436 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4315 36 1 5.9637 -2.0989 1.2435 37 1 6.1093 -0.5372 2.0849 38 1 5.8963 -1.6945 4.2680 39 1 5.7507 -3.2559 3.4259 40 1 7.9978 -4.2974 2.2905 41 1 8.3236 -0.5356 4.3060 42 1 1.8663 -2.5522 -2.1648 43 1 1.6465 -2.5987 -0.3991 44 1 0.3555 -1.9521 -1.4399 45 1 2.1024 1.1189 -2.2603 46 1 0.6813 0.1053 -2.6087 47 1 1.8413 0.8409 -4.9277 48 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700493220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:41 Heat of formation + Delta-G solvation = -24.521616 kcal Electronic energy + Delta-G solvation = -28567.939996 eV Core-core repulsion = 24465.404197 eV Total energy + Delta-G solvation = -4102.535799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06418 -40.85791 -40.24751 -38.71635 -35.95428 -35.18844 -34.83541 -33.23440 -32.26626 -32.02965 -30.12185 -29.29331 -27.39168 -27.00762 -25.46057 -24.52823 -22.88612 -21.37051 -21.12273 -20.77119 -20.52501 -19.77910 -18.68825 -18.05338 -17.58076 -17.12864 -16.87075 -16.51894 -16.29634 -16.20909 -15.74101 -15.51414 -15.34569 -15.11720 -14.90858 -14.61433 -14.50691 -14.12904 -13.83135 -13.67728 -13.52961 -13.38302 -13.32729 -13.03251 -12.91329 -12.81725 -12.74269 -12.40862 -12.34763 -12.23978 -12.10311 -11.99105 -11.71556 -11.44323 -11.41876 -10.79534 -10.57364 -10.22975 -9.95447 -9.89159 -9.38191 -9.14480 -8.43593 -5.91086 1.02129 1.37702 1.43212 1.56588 1.79820 1.82354 2.11663 2.12356 2.29780 2.44809 2.81541 3.24140 3.48581 3.81120 3.84184 4.04671 4.10514 4.12117 4.28949 4.32247 4.35200 4.39430 4.41549 4.56912 4.60804 4.66598 4.67993 4.71108 4.76143 4.82034 4.88787 4.91808 4.96339 5.03716 5.23959 5.31975 5.33306 5.40221 5.44904 5.62026 5.73435 5.92019 6.10292 6.24127 6.49726 6.65403 6.73641 6.75232 7.17986 7.40693 7.62633 8.18806 8.74023 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.002364 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.407533 B =11839.427299 C =14274.738381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.070 3.930 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.712 5.712 6 C 0.509 3.491 7 O -0.590 6.590 8 C -0.128 4.128 9 C -0.013 4.013 10 C -0.252 4.252 11 C 0.044 3.956 12 N -0.337 5.337 13 N -0.474 5.474 14 H 0.451 0.549 15 C 0.074 3.926 16 N -0.521 5.521 17 C 0.027 3.973 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.577 5.577 22 C -0.326 4.326 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.190 0.810 41 H 0.213 0.787 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 2.529 21.643 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 H 0.123 0.877 4 C 0.009 3.991 5 N -0.363 5.363 6 C 0.297 3.703 7 O -0.471 6.471 8 C -0.168 4.168 9 C -0.052 4.052 10 C -0.264 4.264 11 C -0.142 4.142 12 N -0.160 5.160 13 N -0.183 5.183 14 H 0.297 0.703 15 C -0.074 4.074 16 N -0.245 5.245 17 C -0.121 4.121 18 C -0.073 4.073 19 C 0.231 3.769 20 O -0.498 6.498 21 N -0.215 5.215 22 C -0.456 4.456 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.250 0.750 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.207 0.793 41 H 0.229 0.771 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.833 1.196 22.051 22.841 hybrid contribution -1.049 0.597 -1.365 1.822 sum 4.785 1.793 20.686 21.308 Atomic orbital electron populations 1.22368 0.95309 1.02797 1.03610 1.22089 0.94473 0.98758 0.88498 0.87714 1.21345 0.80483 1.00217 0.97013 1.45952 1.07795 1.59058 1.23533 1.21184 0.91236 0.76441 0.81439 1.90659 1.71540 1.49767 1.35129 1.21672 0.89606 1.04332 1.01167 1.19425 0.88223 1.00844 0.96696 1.20226 0.96709 0.97735 1.11722 1.24171 0.90279 1.00436 0.99301 1.77285 1.20356 0.99895 1.18481 1.46364 1.08634 1.16924 1.46404 0.70303 1.22976 0.84158 1.00595 0.99669 1.61719 1.59095 1.02578 1.01090 1.22391 0.96747 0.90635 1.02355 1.21749 0.98673 0.98305 0.88564 1.20823 0.85391 0.86214 0.84516 1.90477 1.45716 1.28660 1.84910 1.41944 1.45112 1.27536 1.06915 1.19644 1.27310 1.10966 0.87649 0.90414 1.25968 0.98041 0.96515 1.00823 1.69671 1.40464 1.20895 1.25284 0.84931 0.78053 0.78145 0.77592 1.19858 1.19863 1.19732 0.89867 0.91821 0.92388 0.90297 0.92952 0.75025 0.88797 0.87043 0.90599 0.91947 0.79312 0.77091 0.92740 0.91379 0.94846 0.86890 0.91518 0.77101 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.44 71.98 0.61 -2.47 16 2 C 0.07 1.38 2.47 44.91 0.11 1.49 16 3 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 4 C 0.13 2.78 4.85 86.38 0.42 3.20 16 5 N -0.71 -15.51 5.39 -463.05 -2.50 -18.00 16 6 C 0.51 11.86 7.83 87.66 0.69 12.55 16 7 O -0.59 -17.71 15.98 -3.05 -0.05 -17.76 16 8 C -0.13 -2.23 5.68 29.85 0.17 -2.06 16 9 C -0.01 -0.22 4.99 29.85 0.15 -0.07 16 10 C -0.25 -4.24 5.35 -20.14 -0.11 -4.34 16 11 C 0.04 0.87 11.96 85.24 1.02 1.89 16 12 N -0.34 -7.25 12.70 -57.02 -0.72 -7.97 16 13 N -0.47 -6.72 7.36 -57.59 -0.42 -7.14 16 14 H 0.45 3.44 8.96 -213.34 -1.91 1.53 16 15 C 0.07 0.91 11.90 83.54 0.99 1.91 16 16 N -0.52 -14.42 3.89 -901.62 -3.51 -17.93 16 17 C 0.03 0.81 8.32 127.69 1.06 1.87 16 18 C 0.06 1.79 5.02 85.56 0.43 2.22 16 19 C 0.44 19.79 7.51 87.66 0.66 20.45 16 20 O -0.61 -31.93 13.88 -3.08 -0.04 -31.97 16 21 N -0.58 -28.44 5.29 -306.98 -1.62 -30.06 16 22 C -0.33 -18.05 9.68 84.04 0.81 -17.24 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 26 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 1.10 6.91 -2.39 -0.02 1.09 16 32 H 0.06 1.07 6.42 -2.38 -0.02 1.05 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.25 6.71 -2.38 -0.02 1.24 16 35 H 0.41 8.83 8.14 -92.71 -0.75 8.07 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.28 8.10 -2.38 -0.02 1.26 16 39 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 40 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.05 2.13 5.88 -2.38 -0.01 2.11 16 43 H 0.07 1.92 6.40 -2.39 -0.02 1.90 16 44 H 0.03 0.90 6.46 -2.39 -0.02 0.89 16 45 H 0.11 2.95 7.93 -2.39 -0.02 2.93 16 46 H 0.07 1.87 7.06 -2.39 -0.02 1.85 16 47 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 48 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -74.80 394.97 -1.46 -76.25 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -2.38 Total: 39.57 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 7.48 Total: 19.12 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -8.49 Total: -129.75 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.09 Total: -49.73 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -74.80 -1.46 -76.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700493220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.731 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds