Wall clock time and date at job start Tue Mar 31 2020 20:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47050 * 2 1 4 4 C 1.53002 * 109.47171 * 240.00655 * 2 1 3 5 5 N 1.46499 * 109.47088 * 184.99994 * 4 2 1 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 2 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 5 11 11 N 1.40318 * 126.32322 * 270.02305 * 10 9 7 12 12 C 1.28873 * 108.11633 * 180.51289 * 11 10 9 13 13 N 1.38012 * 108.82436 * 0.54310 * 12 11 10 14 14 C 1.34317 * 108.31906 * 358.31271 * 13 12 11 15 15 O 1.21820 * 126.32879 * 182.03880 * 14 13 12 16 16 C 1.46716 * 124.17672 * 177.60635 * 13 12 11 17 17 C 1.53293 * 108.65880 * 19.33322 * 16 13 12 18 18 C 1.53232 * 109.36271 * 308.21382 * 17 16 13 19 19 C 1.51122 * 127.45878 * 180.93481 * 12 11 10 20 20 N 1.46494 * 109.47523 * 119.99977 * 2 1 3 21 21 C 1.36933 * 120.00746 * 275.00365 * 20 2 1 22 22 H 1.08008 * 119.99282 * 359.97438 * 21 20 2 23 23 C 1.38808 * 120.00622 * 179.97438 * 21 20 2 24 24 N 1.31621 * 120.00313 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99761 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47067 * 89.99961 * 25 23 21 27 27 H 1.48502 * 109.46937 * 209.99894 * 25 23 21 28 28 H 1.48498 * 109.46850 * 330.00036 * 25 23 21 29 29 H 1.09004 * 109.47261 * 299.99478 * 1 2 3 30 30 H 1.08996 * 109.47538 * 59.99447 * 1 2 3 31 31 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46980 * 64.99557 * 4 2 1 33 33 H 1.09005 * 109.46685 * 304.99649 * 4 2 1 34 34 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 35 35 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 36 36 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 39 39 H 1.08999 * 109.60808 * 259.58331 * 16 13 12 40 40 H 1.08995 * 109.60481 * 139.08376 * 16 13 12 41 41 H 1.09003 * 109.48659 * 188.24967 * 17 16 13 42 42 H 1.08997 * 109.48976 * 68.18332 * 17 16 13 43 43 H 1.09001 * 109.54742 * 310.86624 * 18 17 16 44 44 H 1.09000 * 109.62525 * 190.63157 * 18 17 16 45 45 H 1.08995 * 109.75314 * 317.33279 * 19 12 11 46 46 H 1.09005 * 109.74636 * 78.01624 * 19 12 11 47 47 H 0.97001 * 119.99797 * 95.00062 * 20 2 1 48 48 H 0.96995 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2343 -1.7614 7 6 4.0757 -1.8986 -0.6118 8 8 3.3851 -2.7763 -0.1390 9 6 5.5777 -2.0037 -0.5459 10 7 5.9508 -3.2478 0.1314 11 7 6.1563 -3.4146 1.5094 12 6 6.4809 -4.6439 1.7203 13 7 6.5115 -5.3099 0.5119 14 6 6.1550 -4.4479 -0.4545 15 8 6.0390 -4.7009 -1.6404 16 6 6.8923 -6.7183 0.3565 17 6 6.7658 -7.4135 1.7169 18 6 7.5327 -6.6092 2.7718 19 6 6.7795 -5.3008 3.0480 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8926 1.0404 2.4242 23 6 2.6115 -0.6621 3.5092 24 7 2.7377 -0.0054 4.6429 25 14 3.0545 -2.4749 3.4255 26 1 4.4871 -2.6181 3.0616 27 1 2.8146 -3.1047 4.7488 28 1 2.2140 -3.1430 2.3996 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7515 -0.1581 -2.1370 33 1 1.6054 -1.7197 -1.2953 34 1 4.5423 0.0095 -2.8074 35 1 3.8089 1.1868 -1.6919 36 1 5.2721 0.2955 -1.2093 37 1 5.9865 -2.0033 -1.5564 38 1 5.9773 -1.1544 0.0080 39 1 7.9230 -6.7821 0.0077 40 1 6.2297 -7.1991 -0.3630 41 1 7.1828 -8.4185 1.6518 42 1 5.7145 -7.4731 1.9984 43 1 8.5329 -6.3831 2.4021 44 1 7.6063 -7.1888 3.6920 45 1 7.3988 -4.6403 3.6549 46 1 5.8473 -5.5149 3.5709 47 1 2.2491 -1.6317 1.1525 48 1 3.0603 -0.4629 5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700802972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:00 Heat of formation + Delta-G solvation = 35.447519 kcal Electronic energy + Delta-G solvation = -31525.137107 eV Core-core repulsion = 27425.201765 eV Total energy + Delta-G solvation = -4099.935342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47321 -39.67644 -37.68091 -36.79411 -36.07930 -34.55522 -33.48870 -32.51966 -31.84423 -29.43981 -28.99353 -28.06680 -27.03738 -25.50828 -24.19048 -23.16195 -22.75431 -21.66601 -20.06935 -19.85653 -19.11606 -17.70336 -17.31041 -17.07377 -16.53454 -16.07400 -15.82906 -15.39315 -15.19237 -14.68230 -14.60108 -14.49506 -14.38646 -13.73272 -13.52452 -13.30351 -13.17418 -12.95359 -12.90430 -12.41082 -12.39265 -12.14070 -12.00699 -11.92591 -11.82768 -11.50326 -11.42475 -11.37306 -11.27958 -11.24918 -10.61316 -10.55446 -10.42083 -10.25066 -10.00360 -9.83801 -9.44944 -9.31998 -8.72849 -8.32750 -8.26766 -7.06144 -5.61055 -2.94675 1.76258 2.09882 2.76555 2.91315 3.00561 3.38318 3.62693 3.75243 3.85102 4.11613 4.33307 4.38907 4.51379 4.66542 4.78164 4.85336 4.98142 5.09630 5.12383 5.18020 5.24642 5.30235 5.37792 5.40626 5.44143 5.46791 5.56074 5.65380 5.69566 5.72441 5.76341 5.83290 5.90039 5.96154 5.96824 6.19214 6.22209 6.29875 6.50602 6.60341 6.73595 6.83967 7.08405 7.61384 7.78134 8.15733 8.16819 8.48450 8.59032 9.43493 10.16687 10.38373 11.56451 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004990 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.618837 B = 5609.914738 C = 7172.423514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.108 3.892 5 N -0.604 5.604 6 C 0.078 3.922 7 C 0.505 3.495 8 O -0.519 6.519 9 C 0.146 3.854 10 N -0.437 5.437 11 N -0.242 5.242 12 C 0.265 3.735 13 N -0.557 5.557 14 C 0.657 3.343 15 O -0.562 6.562 16 C 0.134 3.866 17 C -0.138 4.138 18 C -0.122 4.122 19 C -0.042 4.042 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.084 0.916 23 C 0.007 3.993 24 N -0.939 5.939 25 Si 0.863 3.137 26 H -0.243 1.243 27 H -0.305 1.305 28 H -0.278 1.278 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.376 0.624 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 -10.199 -10.387 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.015 4.015 5 N -0.338 5.338 6 C -0.065 4.065 7 C 0.291 3.709 8 O -0.394 6.394 9 C 0.021 3.979 10 N -0.256 5.256 11 N -0.062 5.062 12 C -0.014 4.014 13 N -0.287 5.287 14 C 0.357 3.643 15 O -0.437 6.437 16 C 0.012 3.988 17 C -0.176 4.176 18 C -0.160 4.160 19 C -0.082 4.082 20 N -0.394 5.394 21 C -0.372 4.372 22 H 0.102 0.898 23 C -0.188 4.188 24 N -0.587 5.587 25 Si 0.692 3.308 26 H -0.167 1.167 27 H -0.232 1.232 28 H -0.204 1.204 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.213 0.787 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.496 -9.713 -10.474 18.336 hybrid contribution 0.084 -1.626 -0.233 1.644 sum 11.580 -11.339 -10.707 19.424 Atomic orbital electron populations 1.22385 0.98684 1.00967 1.00458 1.20588 0.92150 0.95802 0.86520 0.92973 1.21923 0.78780 1.02220 0.98610 1.47561 1.07109 1.20621 1.58473 1.21807 0.95614 0.91355 0.97757 1.20662 0.90309 0.82056 0.77866 1.90685 1.64057 1.39784 1.44841 1.21254 0.93730 0.84388 0.98577 1.48337 1.64474 1.08844 1.03901 1.77145 1.19725 1.15155 0.94206 1.24274 0.98597 0.88510 0.90042 1.45989 1.63084 1.12460 1.07150 1.16417 0.81073 0.81558 0.85225 1.91036 1.60802 1.80050 1.11795 1.21732 1.01379 0.76627 0.99082 1.21994 1.02531 0.99641 0.93447 1.21703 0.99176 0.95094 1.00000 1.20506 1.02976 0.96090 0.88619 1.43054 1.79348 1.10535 1.06489 1.19028 1.36825 0.95230 0.86109 0.89803 1.24588 1.01224 0.97606 0.95381 1.69737 1.53157 1.35613 1.00195 0.86827 0.81855 0.86719 0.75397 1.16734 1.23220 1.20429 0.92165 0.94253 0.93568 0.90466 0.90362 0.92699 0.90480 0.91248 0.86308 0.85640 0.90182 0.89227 0.88987 0.90352 0.90745 0.89461 0.87545 0.88065 0.78665 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.16 0.35 -2.69 16 2 C 0.16 3.24 3.20 -67.93 -0.22 3.02 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 C 0.11 1.81 5.14 -4.04 -0.02 1.79 16 5 N -0.60 -9.90 2.77 -181.57 -0.50 -10.40 16 6 C 0.08 0.88 10.25 59.85 0.61 1.49 16 7 C 0.51 9.80 7.04 -10.98 -0.08 9.72 16 8 O -0.52 -12.40 13.59 5.55 0.08 -12.32 16 9 C 0.15 2.38 5.42 -5.20 -0.03 2.35 16 10 N -0.44 -8.16 3.12 -66.41 -0.21 -8.36 16 11 N -0.24 -4.60 11.12 33.13 0.37 -4.23 16 12 C 0.26 4.06 7.73 -153.75 -1.19 2.88 16 13 N -0.56 -8.36 3.13 -117.55 -0.37 -8.73 16 14 C 0.66 12.19 8.64 -87.04 -0.75 11.44 16 15 O -0.56 -11.50 17.83 5.08 0.09 -11.41 16 16 C 0.13 1.34 6.88 -3.77 -0.03 1.32 16 17 C -0.14 -0.99 5.94 -26.46 -0.16 -1.15 16 18 C -0.12 -0.83 5.96 -26.37 -0.16 -0.99 16 19 C -0.04 -0.45 6.32 -27.43 -0.17 -0.62 16 20 N -0.75 -19.26 4.33 -53.43 -0.23 -19.49 16 21 C -0.24 -7.22 10.41 -15.06 -0.16 -7.38 16 22 H 0.08 2.64 8.06 -52.48 -0.42 2.21 16 23 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 24 N -0.94 -30.74 13.97 55.49 0.78 -29.97 16 25 Si 0.86 24.06 27.58 -169.99 -4.69 19.38 16 26 H -0.24 -6.39 5.66 56.52 0.32 -6.07 16 27 H -0.30 -8.56 7.11 56.52 0.40 -8.16 16 28 H -0.28 -8.20 6.52 56.52 0.37 -7.83 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.12 1.55 8.09 -51.93 -0.42 1.13 16 38 H 0.13 1.83 7.40 -51.93 -0.38 1.45 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.38 10.19 2.88 -40.82 -0.12 10.07 16 48 H 0.26 8.02 8.31 -40.82 -0.34 7.69 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -42.59 385.08 -8.61 -51.20 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.64 Total: 7.22 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: -2.08 Total: 21.32 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -0.17 Total: -81.18 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.69 Total: 19.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -42.59 -8.61 -51.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.650 kcal (2) G-P(sol) polarization free energy of solvation -42.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds