Wall clock time and date at job start Tue Mar 31 2020 20:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47050 * 2 1 4 4 C 1.53002 * 109.47171 * 240.00655 * 2 1 3 5 5 N 1.46499 * 109.47088 * 184.99994 * 4 2 1 6 6 C 1.46506 * 119.99537 * 269.99330 * 5 4 2 7 7 C 1.34777 * 120.00199 * 89.99979 * 5 4 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 5 4 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 5 11 11 N 1.40318 * 126.32322 * 270.02305 * 10 9 7 12 12 C 1.28873 * 108.11633 * 180.51289 * 11 10 9 13 13 N 1.38012 * 108.82436 * 0.54310 * 12 11 10 14 14 C 1.34317 * 108.31906 * 358.31271 * 13 12 11 15 15 O 1.21820 * 126.32879 * 182.03880 * 14 13 12 16 16 C 1.46716 * 124.17672 * 177.60635 * 13 12 11 17 17 C 1.53293 * 108.65880 * 19.33322 * 16 13 12 18 18 C 1.53232 * 109.36271 * 308.21382 * 17 16 13 19 19 C 1.51122 * 127.45878 * 180.93481 * 12 11 10 20 20 N 1.46494 * 109.47523 * 119.99977 * 2 1 3 21 21 C 1.36933 * 120.00746 * 275.00365 * 20 2 1 22 22 H 1.08008 * 119.99282 * 359.97438 * 21 20 2 23 23 C 1.38808 * 120.00622 * 179.97438 * 21 20 2 24 24 N 1.31621 * 120.00313 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99761 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47067 * 89.99961 * 25 23 21 27 27 H 1.48502 * 109.46937 * 209.99894 * 25 23 21 28 28 H 1.48498 * 109.46850 * 330.00036 * 25 23 21 29 29 H 1.09004 * 109.47261 * 299.99478 * 1 2 3 30 30 H 1.08996 * 109.47538 * 59.99447 * 1 2 3 31 31 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46980 * 64.99557 * 4 2 1 33 33 H 1.09005 * 109.46685 * 304.99649 * 4 2 1 34 34 H 1.08998 * 109.46921 * 269.99744 * 6 5 4 35 35 H 1.08994 * 109.46996 * 30.00327 * 6 5 4 36 36 H 1.09001 * 109.46578 * 150.00190 * 6 5 4 37 37 H 1.09004 * 109.46965 * 299.72211 * 9 7 5 38 38 H 1.08994 * 109.46990 * 59.72065 * 9 7 5 39 39 H 1.08999 * 109.60808 * 259.58331 * 16 13 12 40 40 H 1.08995 * 109.60481 * 139.08376 * 16 13 12 41 41 H 1.09003 * 109.48659 * 188.24967 * 17 16 13 42 42 H 1.08997 * 109.48976 * 68.18332 * 17 16 13 43 43 H 1.09001 * 109.54742 * 310.86624 * 18 17 16 44 44 H 1.09000 * 109.62525 * 190.63157 * 18 17 16 45 45 H 1.08995 * 109.75314 * 317.33279 * 19 12 11 46 46 H 1.09005 * 109.74636 * 78.01624 * 19 12 11 47 47 H 0.97001 * 119.99797 * 95.00062 * 20 2 1 48 48 H 0.96995 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2343 -1.7614 7 6 4.0757 -1.8986 -0.6118 8 8 3.3851 -2.7763 -0.1390 9 6 5.5777 -2.0037 -0.5459 10 7 5.9508 -3.2478 0.1314 11 7 6.1563 -3.4146 1.5094 12 6 6.4809 -4.6439 1.7203 13 7 6.5115 -5.3099 0.5119 14 6 6.1550 -4.4479 -0.4545 15 8 6.0390 -4.7009 -1.6404 16 6 6.8923 -6.7183 0.3565 17 6 6.7658 -7.4135 1.7169 18 6 7.5327 -6.6092 2.7718 19 6 6.7795 -5.3008 3.0480 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8926 1.0404 2.4242 23 6 2.6115 -0.6621 3.5092 24 7 2.7377 -0.0054 4.6429 25 14 3.0545 -2.4749 3.4255 26 1 4.4871 -2.6181 3.0616 27 1 2.8146 -3.1047 4.7488 28 1 2.2140 -3.1430 2.3996 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7515 -0.1581 -2.1370 33 1 1.6054 -1.7197 -1.2953 34 1 4.5423 0.0095 -2.8074 35 1 3.8089 1.1868 -1.6919 36 1 5.2721 0.2955 -1.2093 37 1 5.9865 -2.0033 -1.5564 38 1 5.9773 -1.1544 0.0080 39 1 7.9230 -6.7821 0.0077 40 1 6.2297 -7.1991 -0.3630 41 1 7.1828 -8.4185 1.6518 42 1 5.7145 -7.4731 1.9984 43 1 8.5329 -6.3831 2.4021 44 1 7.6063 -7.1888 3.6920 45 1 7.3988 -4.6403 3.6549 46 1 5.8473 -5.5149 3.5709 47 1 2.2491 -1.6317 1.1525 48 1 3.0603 -0.4629 5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700802972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:59 Heat of formation + Delta-G solvation = 4.839268 kcal Electronic energy + Delta-G solvation = -31526.464380 eV Core-core repulsion = 27425.201765 eV Total energy + Delta-G solvation = -4101.262615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.68539 -41.07267 -38.85464 -38.04340 -37.57743 -36.15136 -34.56688 -34.04176 -33.52441 -31.32685 -30.10961 -29.28993 -28.14412 -26.70178 -25.49753 -25.00105 -23.69617 -22.92816 -21.72914 -20.73771 -20.55446 -19.71924 -18.65402 -18.34535 -17.74653 -17.32567 -17.10544 -16.73984 -16.60410 -16.50172 -15.74232 -15.54994 -15.28017 -15.20864 -14.87069 -14.61324 -14.51809 -14.29137 -14.22511 -14.01174 -13.70111 -13.40461 -13.39233 -13.25257 -13.12260 -12.94672 -12.83800 -12.63780 -12.39053 -12.23672 -12.09886 -11.94316 -11.91878 -11.83928 -11.78472 -11.43376 -11.34048 -10.92321 -10.71964 -9.66401 -9.62258 -9.23957 -8.02918 -5.31059 0.58865 0.90538 1.31484 1.44094 1.49388 1.51716 1.61099 1.89213 2.15851 2.52052 3.16251 3.29951 3.43391 3.52470 3.68971 3.71318 3.79112 3.85065 3.97237 4.07624 4.29523 4.29948 4.33752 4.37318 4.39000 4.46397 4.54016 4.61324 4.72700 4.75554 4.80930 4.83045 4.84503 4.92811 4.97365 4.97955 5.02912 5.11122 5.19728 5.28620 5.38973 5.53930 5.62301 5.78854 6.22730 6.32432 6.52996 6.84467 7.08233 7.15947 7.95620 8.12199 9.18079 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004990 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.618837 B = 5609.914738 C = 7172.423514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.057 0.943 4 C 0.114 3.886 5 N -0.603 5.603 6 C 0.068 3.932 7 C 0.492 3.508 8 O -0.575 6.575 9 C 0.143 3.857 10 N -0.444 5.444 11 N -0.297 5.297 12 C 0.274 3.726 13 N -0.553 5.553 14 C 0.642 3.358 15 O -0.593 6.593 16 C 0.120 3.880 17 C -0.132 4.132 18 C -0.112 4.112 19 C -0.050 4.050 20 N -0.756 5.756 21 C -0.220 4.220 22 H 0.062 0.938 23 C -0.052 4.052 24 N -0.979 5.979 25 Si 0.928 3.072 26 H -0.224 1.224 27 H -0.308 1.308 28 H -0.304 1.304 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.371 0.629 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 -11.131 -11.757 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.075 0.925 4 C -0.009 4.009 5 N -0.335 5.335 6 C -0.074 4.074 7 C 0.279 3.721 8 O -0.454 6.454 9 C 0.018 3.982 10 N -0.263 5.263 11 N -0.119 5.119 12 C -0.004 4.004 13 N -0.281 5.281 14 C 0.342 3.658 15 O -0.471 6.471 16 C 0.000 4.000 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.089 4.089 20 N -0.403 5.403 21 C -0.351 4.351 22 H 0.080 0.920 23 C -0.243 4.243 24 N -0.630 5.630 25 Si 0.758 3.242 26 H -0.147 1.147 27 H -0.236 1.236 28 H -0.232 1.232 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.117 0.883 47 H 0.208 0.792 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.104 -10.618 -11.894 20.638 hybrid contribution -0.470 -1.258 0.085 1.346 sum 12.634 -11.876 -11.809 20.979 Atomic orbital electron populations 1.22246 0.97184 1.00682 1.01508 1.20963 0.93185 0.95891 0.85949 0.92542 1.21875 0.79188 1.01282 0.98572 1.47761 1.07447 1.20876 1.57371 1.22186 0.95412 0.90259 0.99515 1.21288 0.91436 0.82079 0.77298 1.90645 1.65353 1.41926 1.47471 1.21495 0.91935 0.84470 1.00307 1.48549 1.64251 1.09406 1.04066 1.77066 1.22801 1.17501 0.94520 1.25206 0.95886 0.87790 0.91537 1.46324 1.61798 1.13703 1.06299 1.16711 0.81438 0.82184 0.85481 1.90985 1.62406 1.80678 1.13002 1.22219 1.02363 0.74284 1.01154 1.22046 1.02214 1.01145 0.91535 1.21740 0.98833 0.93090 1.01279 1.20898 1.03681 0.98082 0.86263 1.43215 1.79662 1.10412 1.06999 1.19060 1.34194 0.94311 0.87523 0.92050 1.25176 1.02802 1.00902 0.95469 1.69856 1.55408 1.36942 1.00827 0.85849 0.82153 0.82319 0.73836 1.14712 1.23621 1.23204 0.94737 0.89527 0.94513 0.85337 0.92544 0.89357 0.89222 0.90244 0.83383 0.84335 0.87911 0.89998 0.85254 0.91692 0.89510 0.86404 0.86270 0.88331 0.79245 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.49 71.98 0.68 -4.90 16 2 C 0.15 5.85 3.20 44.99 0.14 6.00 16 3 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 4 C 0.11 3.61 5.14 86.38 0.44 4.05 16 5 N -0.60 -18.71 2.77 -846.74 -2.35 -21.06 16 6 C 0.07 1.30 10.25 127.77 1.31 2.61 16 7 C 0.49 18.94 7.04 87.66 0.62 19.56 16 8 O -0.57 -28.05 13.59 -3.04 -0.04 -28.09 16 9 C 0.14 4.58 5.42 85.64 0.46 5.04 16 10 N -0.44 -16.67 3.12 -481.99 -1.50 -18.17 16 11 N -0.30 -11.31 11.12 -49.11 -0.55 -11.86 16 12 C 0.27 8.24 7.73 137.75 1.06 9.30 16 13 N -0.55 -16.28 3.13 -644.24 -2.02 -18.30 16 14 C 0.64 23.99 8.64 179.10 1.55 25.54 16 15 O -0.59 -24.56 17.83 -4.73 -0.08 -24.65 16 16 C 0.12 2.21 6.88 86.44 0.59 2.81 16 17 C -0.13 -1.50 5.94 30.77 0.18 -1.31 16 18 C -0.11 -1.12 5.96 30.83 0.18 -0.94 16 19 C -0.05 -0.96 6.32 30.14 0.19 -0.77 16 20 N -0.76 -39.34 4.33 -322.95 -1.40 -40.73 16 21 C -0.22 -13.37 10.41 84.03 0.87 -12.49 16 22 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 23 C -0.05 -3.30 5.50 84.86 0.47 -2.84 16 24 N -0.98 -65.61 13.97 21.65 0.30 -65.31 16 25 Si 0.93 52.26 27.58 68.60 1.89 54.15 16 26 H -0.22 -11.76 5.66 99.48 0.56 -11.20 16 27 H -0.31 -17.26 7.11 99.48 0.71 -16.55 16 28 H -0.30 -18.33 6.52 99.48 0.65 -17.68 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.13 2.74 8.07 -2.39 -0.02 2.73 16 33 H 0.06 2.07 7.42 -2.38 -0.02 2.05 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.53 8.07 -2.39 -0.02 1.51 16 36 H 0.08 1.39 6.43 -2.39 -0.02 1.37 16 37 H 0.15 3.69 8.09 -2.38 -0.02 3.67 16 38 H 0.14 3.95 7.40 -2.39 -0.02 3.93 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 43 H 0.09 0.72 8.11 -2.39 -0.02 0.70 16 44 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.37 20.45 2.88 -92.71 -0.27 20.18 16 48 H 0.25 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -98.40 385.08 3.52 -94.88 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.50 Total: 27.50 kcal Atomic # 6 Polarization: 42.89 SS G_CDS: 8.77 Total: 51.66 kcal Atomic # 7 Polarization: -167.93 SS G_CDS: -7.51 Total: -175.44 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.13 Total: -52.74 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 1.89 Total: 54.15 kcal Total: -98.40 3.52 -94.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.719 kcal (2) G-P(sol) polarization free energy of solvation -98.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds