Wall clock time and date at job start Tue Mar 31 2020 20:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 N 1.46502 * 109.46634 * 180.02562 * 9 7 5 11 11 N 1.40316 * 126.32065 * 270.02088 * 10 9 7 12 12 C 1.28876 * 108.11492 * 180.51669 * 11 10 9 13 13 N 1.38014 * 108.82457 * 0.54060 * 12 11 10 14 14 C 1.34323 * 108.31748 * 358.31818 * 13 12 11 15 15 O 1.21817 * 126.32993 * 182.03405 * 14 13 12 16 16 C 1.46717 * 124.17710 * 177.61059 * 13 12 11 17 17 C 1.53279 * 108.66435 * 19.33359 * 16 13 12 18 18 C 1.53238 * 109.35936 * 308.22291 * 17 16 13 19 19 C 1.51115 * 127.46212 * 180.94156 * 12 11 10 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 33 33 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 34 34 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 35 35 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 36 36 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 37 37 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 38 38 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 39 39 H 1.09007 * 109.60067 * 259.58018 * 16 13 12 40 40 H 1.09003 * 109.60602 * 139.09304 * 16 13 12 41 41 H 1.08994 * 109.49361 * 188.25030 * 17 16 13 42 42 H 1.09004 * 109.49033 * 68.18390 * 17 16 13 43 43 H 1.08997 * 109.54633 * 310.85659 * 18 17 16 44 44 H 1.09005 * 109.62014 * 190.63190 * 18 17 16 45 45 H 1.09002 * 109.74884 * 317.32799 * 19 12 11 46 46 H 1.09000 * 109.75153 * 78.00886 * 19 12 11 47 47 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 48 48 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 7 6.3696 1.2176 2.2890 11 7 6.7080 2.4224 1.6543 12 6 7.2203 3.2100 2.5364 13 7 7.2470 2.5588 3.7529 14 6 6.6942 1.3449 3.5942 15 8 6.5195 0.5119 4.4657 16 6 7.8104 3.1300 4.9813 17 6 7.8950 4.6520 4.8207 18 6 8.6227 4.9852 3.5140 19 6 7.7161 4.6225 2.3301 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 3.7570 1.3957 -4.9279 27 1 3.3164 -0.6440 -6.1637 28 1 1.4824 0.8102 -5.5308 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4994 35 1 5.0864 -2.1898 1.0370 36 1 3.4770 -2.8600 0.6778 37 1 6.0907 -0.8579 2.1802 38 1 6.0880 -0.0128 0.6137 39 1 8.8079 2.7239 5.1494 40 1 7.1666 2.8865 5.8266 41 1 8.4439 5.0765 5.6612 42 1 6.8892 5.0713 4.7939 43 1 9.5472 4.4109 3.4547 44 1 8.8526 6.0503 3.4844 45 1 8.2824 4.6821 1.4006 46 1 6.8695 5.3079 2.2900 47 1 2.2490 -1.6318 -1.1526 48 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700802973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:03 Heat of formation + Delta-G solvation = 26.295946 kcal Electronic energy + Delta-G solvation = -30334.930182 eV Core-core repulsion = 26234.597998 eV Total energy + Delta-G solvation = -4100.332184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58067 -39.56173 -37.76790 -36.88675 -36.21649 -34.22972 -33.59228 -32.63321 -31.96333 -29.30978 -28.80861 -28.07078 -26.73069 -25.50941 -24.29541 -23.47490 -22.86894 -21.75799 -20.19732 -19.97369 -18.98324 -17.44638 -17.27714 -17.06714 -16.59240 -16.07092 -15.89757 -15.33369 -15.17783 -14.71431 -14.63129 -14.57214 -14.48134 -13.80157 -13.68713 -13.41742 -13.26146 -13.01088 -12.64330 -12.26678 -12.20930 -12.16352 -12.00350 -11.89971 -11.83065 -11.53871 -11.40694 -11.38044 -11.34550 -11.21372 -10.81661 -10.67844 -10.34057 -10.32690 -10.16588 -10.07184 -9.62626 -9.43091 -8.90885 -8.44922 -8.12619 -6.92138 -5.75714 -3.02203 1.67226 1.94729 2.70180 2.89282 2.94490 3.45265 3.48021 3.49859 3.51655 4.00993 4.19921 4.27042 4.39252 4.61816 4.71043 4.75262 4.88367 4.97277 5.08741 5.20597 5.27000 5.33776 5.34530 5.42408 5.43357 5.55587 5.58564 5.59776 5.70663 5.70881 5.83828 5.87574 5.94867 6.10416 6.16233 6.30755 6.35799 6.45830 6.49824 6.66577 6.84504 6.90452 7.18215 7.65971 7.72074 7.75644 8.07753 8.43748 8.50395 9.55281 10.11272 10.48178 11.47080 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.003083 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.360226 B = 9079.637887 C =10014.061946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.051 0.949 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.073 3.927 7 C 0.501 3.499 8 O -0.538 6.538 9 C 0.144 3.856 10 N -0.434 5.434 11 N -0.259 5.259 12 C 0.270 3.730 13 N -0.557 5.557 14 C 0.657 3.343 15 O -0.558 6.558 16 C 0.132 3.868 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.039 4.039 20 N -0.719 5.719 21 C -0.229 4.229 22 H 0.067 0.933 23 C -0.014 4.014 24 N -0.936 5.936 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.288 1.288 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.382 0.618 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.813 9.948 16.107 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.011 4.011 5 N -0.324 5.324 6 C -0.070 4.070 7 C 0.287 3.713 8 O -0.415 6.415 9 C 0.019 3.981 10 N -0.253 5.253 11 N -0.080 5.080 12 C -0.009 4.009 13 N -0.287 5.287 14 C 0.356 3.644 15 O -0.433 6.433 16 C 0.010 3.990 17 C -0.175 4.175 18 C -0.162 4.162 19 C -0.079 4.079 20 N -0.362 5.362 21 C -0.361 4.361 22 H 0.085 0.915 23 C -0.209 4.209 24 N -0.586 5.586 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.215 1.215 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.216 0.784 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.134 9.744 15.875 22.230 hybrid contribution 0.130 -0.002 -0.415 0.435 sum 12.264 9.743 15.460 22.007 Atomic orbital electron populations 1.22364 0.98835 1.00813 1.00228 1.20642 0.91924 0.96266 0.86743 0.93141 1.21871 0.78537 1.01218 0.99428 1.47541 1.06792 1.21101 1.56959 1.22012 0.97313 0.87480 1.00234 1.20631 0.89150 0.82904 0.78638 1.90672 1.74572 1.31124 1.45161 1.21321 0.91129 0.84440 1.01165 1.48341 1.57750 1.12645 1.06567 1.76838 1.18249 0.92345 1.20604 1.24253 0.97881 0.97135 0.81619 1.46013 1.56173 1.15487 1.10994 1.16439 0.81089 0.82923 0.83905 1.91054 1.62380 1.45171 1.44648 1.21749 0.99264 0.93669 0.84274 1.21984 1.02641 0.93772 0.99116 1.21712 0.98432 1.02926 0.93082 1.20479 1.00603 0.86007 1.00802 1.42383 1.78170 1.10433 1.05173 1.19187 1.35712 0.93798 0.87366 0.91522 1.24653 1.02452 0.95994 0.97842 1.69621 1.51433 1.08548 1.28953 0.86307 0.77768 0.78656 0.83736 1.21367 1.21784 1.21452 0.92568 0.93462 0.94391 0.90354 0.90847 0.89428 0.92285 0.90966 0.86168 0.85453 0.90152 0.89142 0.88993 0.90344 0.90752 0.89469 0.87629 0.87936 0.78378 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.16 0.35 -2.69 16 2 C 0.15 3.24 3.20 -67.93 -0.22 3.03 16 3 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 4 C 0.11 2.03 5.07 -4.04 -0.02 2.01 16 5 N -0.59 -10.48 2.73 -181.56 -0.50 -10.98 16 6 C 0.07 1.11 9.02 59.85 0.54 1.65 16 7 C 0.50 9.53 7.74 -10.98 -0.09 9.44 16 8 O -0.54 -12.10 16.01 5.56 0.09 -12.01 16 9 C 0.14 2.30 5.42 -5.19 -0.03 2.27 16 10 N -0.43 -7.42 3.12 -66.40 -0.21 -7.63 16 11 N -0.26 -4.15 12.51 33.13 0.41 -3.74 16 12 C 0.27 3.33 7.73 -153.75 -1.19 2.14 16 13 N -0.56 -7.23 3.13 -117.55 -0.37 -7.60 16 14 C 0.66 11.28 8.64 -87.04 -0.75 10.52 16 15 O -0.56 -10.97 17.83 5.08 0.09 -10.88 16 16 C 0.13 1.10 6.88 -3.78 -0.03 1.08 16 17 C -0.14 -0.69 5.94 -26.46 -0.16 -0.84 16 18 C -0.12 -0.54 5.96 -26.37 -0.16 -0.70 16 19 C -0.04 -0.27 6.32 -27.44 -0.17 -0.45 16 20 N -0.72 -17.48 4.39 -53.42 -0.23 -17.71 16 21 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.94 -26.99 13.06 55.49 0.72 -26.27 16 25 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.41 7.42 -51.92 -0.39 1.03 16 33 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.09 1.63 7.39 -51.93 -0.38 1.25 16 35 H 0.06 0.71 6.44 -51.92 -0.33 0.37 16 36 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 37 H 0.12 1.62 7.38 -51.93 -0.38 1.24 16 38 H 0.13 1.86 8.11 -51.93 -0.42 1.44 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.38 9.47 6.26 -40.82 -0.26 9.22 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -37.64 392.99 -8.84 -46.48 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.60 Total: 6.54 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: -2.16 Total: 20.52 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -0.17 Total: -73.92 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.64 -8.84 -46.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.776 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds