Wall clock time and date at job start Tue Mar 31 2020 20:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 N 1.46502 * 109.46634 * 180.02562 * 9 7 5 11 11 N 1.40316 * 126.32065 * 270.02088 * 10 9 7 12 12 C 1.28876 * 108.11492 * 180.51669 * 11 10 9 13 13 N 1.38014 * 108.82457 * 0.54060 * 12 11 10 14 14 C 1.34323 * 108.31748 * 358.31818 * 13 12 11 15 15 O 1.21817 * 126.32993 * 182.03405 * 14 13 12 16 16 C 1.46717 * 124.17710 * 177.61059 * 13 12 11 17 17 C 1.53279 * 108.66435 * 19.33359 * 16 13 12 18 18 C 1.53238 * 109.35936 * 308.22291 * 17 16 13 19 19 C 1.51115 * 127.46212 * 180.94156 * 12 11 10 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 33 33 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 34 34 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 35 35 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 36 36 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 37 37 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 38 38 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 39 39 H 1.09007 * 109.60067 * 259.58018 * 16 13 12 40 40 H 1.09003 * 109.60602 * 139.09304 * 16 13 12 41 41 H 1.08994 * 109.49361 * 188.25030 * 17 16 13 42 42 H 1.09004 * 109.49033 * 68.18390 * 17 16 13 43 43 H 1.08997 * 109.54633 * 310.85659 * 18 17 16 44 44 H 1.09005 * 109.62014 * 190.63190 * 18 17 16 45 45 H 1.09002 * 109.74884 * 317.32799 * 19 12 11 46 46 H 1.09000 * 109.75153 * 78.00886 * 19 12 11 47 47 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 48 48 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 7 6.3696 1.2176 2.2890 11 7 6.7080 2.4224 1.6543 12 6 7.2203 3.2100 2.5364 13 7 7.2470 2.5588 3.7529 14 6 6.6942 1.3449 3.5942 15 8 6.5195 0.5119 4.4657 16 6 7.8104 3.1300 4.9813 17 6 7.8950 4.6520 4.8207 18 6 8.6227 4.9852 3.5140 19 6 7.7161 4.6225 2.3301 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 3.7570 1.3957 -4.9279 27 1 3.3164 -0.6440 -6.1637 28 1 1.4824 0.8102 -5.5308 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4994 35 1 5.0864 -2.1898 1.0370 36 1 3.4770 -2.8600 0.6778 37 1 6.0907 -0.8579 2.1802 38 1 6.0880 -0.0128 0.6137 39 1 8.8079 2.7239 5.1494 40 1 7.1666 2.8865 5.8266 41 1 8.4439 5.0765 5.6612 42 1 6.8892 5.0713 4.7939 43 1 9.5472 4.4109 3.4547 44 1 8.8526 6.0503 3.4844 45 1 8.2824 4.6821 1.4006 46 1 6.8695 5.3079 2.2900 47 1 2.2490 -1.6318 -1.1526 48 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700802973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:02 Heat of formation + Delta-G solvation = 1.155794 kcal Electronic energy + Delta-G solvation = -30336.020341 eV Core-core repulsion = 26234.597998 eV Total energy + Delta-G solvation = -4101.422342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.66955 -41.02674 -38.84103 -38.10483 -37.65694 -35.89416 -34.55855 -33.98396 -33.49093 -30.82400 -30.04056 -29.25682 -28.09450 -26.80368 -25.69611 -24.97901 -23.65372 -22.92353 -21.83373 -20.69297 -20.45111 -19.27633 -18.65393 -18.33144 -17.75625 -17.26757 -17.12958 -16.71873 -16.53794 -16.34383 -15.68433 -15.55097 -15.27977 -15.18275 -15.16268 -14.68622 -14.30619 -14.15328 -13.98779 -13.84446 -13.65274 -13.42181 -13.28789 -13.16529 -13.07262 -12.90649 -12.78553 -12.71264 -12.51175 -12.22411 -12.08006 -11.90481 -11.89050 -11.85696 -11.64780 -11.45607 -11.34302 -10.97831 -10.73647 -9.67308 -9.65396 -8.93883 -7.90866 -5.16468 0.57832 0.93719 1.43970 1.47387 1.48241 1.48590 1.54602 1.90630 2.14917 2.57739 3.19198 3.38835 3.43114 3.56168 3.74418 3.84314 3.86802 3.88301 4.01166 4.10188 4.25288 4.33715 4.36418 4.38185 4.42237 4.53424 4.61458 4.63421 4.69074 4.78316 4.81491 4.87374 4.88533 4.99232 5.01551 5.06002 5.14078 5.16774 5.22495 5.34004 5.35037 5.52870 5.58070 5.63223 6.29491 6.33201 6.54375 6.84595 7.03874 7.39526 8.10801 8.41592 9.31096 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.003083 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.360226 B = 9079.637887 C =10014.061946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.016 0.984 4 C 0.117 3.883 5 N -0.592 5.592 6 C 0.075 3.925 7 C 0.494 3.506 8 O -0.581 6.581 9 C 0.146 3.854 10 N -0.445 5.445 11 N -0.308 5.308 12 C 0.285 3.715 13 N -0.553 5.553 14 C 0.640 3.360 15 O -0.595 6.595 16 C 0.118 3.882 17 C -0.130 4.130 18 C -0.115 4.115 19 C -0.042 4.042 20 N -0.722 5.722 21 C -0.236 4.236 22 H 0.057 0.943 23 C -0.062 4.062 24 N -0.957 5.957 25 Si 0.960 3.040 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.380 0.620 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 11.261 16.831 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.034 0.966 4 C -0.006 4.006 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.281 3.719 8 O -0.461 6.461 9 C 0.021 3.979 10 N -0.263 5.263 11 N -0.130 5.130 12 C 0.007 3.993 13 N -0.281 5.281 14 C 0.339 3.661 15 O -0.473 6.473 16 C -0.002 4.002 17 C -0.167 4.167 18 C -0.153 4.153 19 C -0.081 4.081 20 N -0.364 5.364 21 C -0.368 4.368 22 H 0.075 0.925 23 C -0.255 4.255 24 N -0.607 5.607 25 Si 0.790 3.210 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.214 0.786 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.436 11.090 16.613 24.073 hybrid contribution -0.266 -0.329 -0.576 0.715 sum 13.171 10.761 16.037 23.376 Atomic orbital electron populations 1.22208 0.96793 1.01614 1.00599 1.20711 0.93302 0.94492 0.86922 0.96563 1.21808 0.79056 1.02152 0.97610 1.47682 1.06755 1.21491 1.56321 1.22067 0.99425 0.86891 0.98297 1.21232 0.90519 0.82327 0.77840 1.90633 1.75576 1.32770 1.47126 1.21402 0.88955 0.85479 1.02092 1.48485 1.57708 1.13314 1.06800 1.76835 1.21252 0.92790 1.22137 1.25368 0.95074 0.98280 0.80574 1.46325 1.55009 1.14171 1.12579 1.16772 0.81618 0.83997 0.83706 1.90998 1.64100 1.46636 1.45537 1.22228 0.99515 0.96207 0.82236 1.22031 1.03015 0.90762 1.00928 1.21754 0.97585 1.04939 0.91051 1.20899 1.01675 0.82558 1.03004 1.42393 1.78439 1.10243 1.05302 1.19355 1.35195 0.93584 0.88698 0.92524 1.25273 1.02902 0.96877 1.00430 1.69735 1.52226 1.09441 1.29325 0.85420 0.77600 0.77515 0.80446 1.21215 1.21705 1.21119 0.94418 0.92370 0.91786 0.90361 0.88293 0.92792 0.88754 0.89359 0.83917 0.84542 0.88455 0.90097 0.85719 0.91024 0.90209 0.86256 0.86066 0.86842 0.78626 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.49 71.98 0.68 -4.94 16 2 C 0.16 6.57 3.20 44.99 0.14 6.72 16 3 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 4 C 0.12 4.17 5.07 86.38 0.44 4.61 16 5 N -0.59 -20.99 2.73 -846.73 -2.31 -23.30 16 6 C 0.08 2.26 9.02 127.77 1.15 3.41 16 7 C 0.49 19.18 7.74 87.66 0.68 19.86 16 8 O -0.58 -27.05 16.01 -3.02 -0.05 -27.10 16 9 C 0.15 4.71 5.42 85.63 0.46 5.18 16 10 N -0.44 -15.59 3.12 -481.98 -1.50 -17.09 16 11 N -0.31 -10.02 12.51 -49.11 -0.61 -10.64 16 12 C 0.29 6.86 7.73 137.75 1.06 7.92 16 13 N -0.55 -14.20 3.13 -644.24 -2.02 -16.21 16 14 C 0.64 22.49 8.64 179.10 1.55 24.04 16 15 O -0.60 -24.09 17.83 -4.72 -0.08 -24.18 16 16 C 0.12 1.82 6.88 86.43 0.59 2.41 16 17 C -0.13 -0.90 5.94 30.77 0.18 -0.72 16 18 C -0.12 -0.58 5.96 30.83 0.18 -0.39 16 19 C -0.04 -0.48 6.32 30.13 0.19 -0.29 16 20 N -0.72 -35.49 4.39 -322.93 -1.42 -36.91 16 21 C -0.24 -13.18 9.93 84.04 0.83 -12.34 16 22 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 23 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 24 N -0.96 -55.44 13.06 21.65 0.28 -55.16 16 25 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.82 7.42 -2.38 -0.02 2.80 16 33 H 0.10 3.02 7.89 -2.39 -0.02 3.00 16 34 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 35 H 0.09 2.13 6.44 -2.38 -0.02 2.11 16 36 H 0.09 2.36 7.89 -2.39 -0.02 2.34 16 37 H 0.14 3.83 7.38 -2.39 -0.02 3.81 16 38 H 0.14 4.07 8.11 -2.39 -0.02 4.05 16 39 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.07 0.64 8.10 -2.38 -0.02 0.62 16 43 H 0.08 0.38 8.11 -2.39 -0.02 0.36 16 44 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 45 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.38 18.96 6.26 -92.71 -0.58 18.38 16 48 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -84.85 392.99 3.32 -81.53 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.39 Total: 28.34 kcal Atomic # 6 Polarization: 43.83 SS G_CDS: 8.62 Total: 52.46 kcal Atomic # 7 Polarization: -151.73 SS G_CDS: -7.58 Total: -159.32 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.13 Total: -51.27 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -84.85 3.32 -81.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.682 kcal (2) G-P(sol) polarization free energy of solvation -84.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds