Wall clock time and date at job start Tue Mar 31 2020 20:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42907 * 109.47225 * 2 1 4 4 C 1.42898 * 113.99926 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.30672 * 27.82371 * 4 3 2 6 6 C 1.54393 * 110.43088 * 265.58819 * 4 3 2 7 7 N 1.48150 * 104.61725 * 264.95301 * 6 4 3 8 8 C 1.34772 * 127.83835 * 140.39187 * 7 6 4 9 9 O 1.21615 * 120.00114 * 181.06103 * 8 7 6 10 10 C 1.47243 * 119.99519 * 1.06798 * 8 7 6 11 11 C 1.37000 * 127.19126 * 10.12348 * 10 8 7 12 12 N 1.33326 * 106.37073 * 179.84443 * 11 10 8 13 13 N 1.28511 * 109.43537 * 0.43032 * 12 11 10 14 14 N 1.28715 * 110.64165 * 359.72350 * 13 12 11 15 15 C 1.46498 * 126.03264 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.47302 * 264.80708 * 15 14 13 17 17 C 1.48146 * 104.32314 * 320.41753 * 7 6 4 18 18 C 1.54285 * 110.33997 * 150.00244 * 4 3 2 19 19 H 1.09000 * 110.34319 * 359.97438 * 18 4 3 20 20 C 1.53005 * 110.34290 * 237.84599 * 18 4 3 21 21 N 1.46498 * 109.47399 * 174.99904 * 20 18 4 22 22 C 1.36934 * 120.00056 * 180.27447 * 21 20 18 23 23 H 1.08000 * 120.00139 * 359.72240 * 22 21 20 24 24 C 1.38808 * 119.99938 * 179.72564 * 22 21 20 25 25 N 1.31622 * 120.00165 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00223 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47034 * 90.00016 * 26 24 22 28 28 H 1.48498 * 109.47217 * 210.00120 * 26 24 22 29 29 H 1.48500 * 109.46820 * 330.00006 * 26 24 22 30 30 H 1.09001 * 109.46822 * 299.99910 * 1 2 3 31 31 H 1.08994 * 109.47387 * 59.99648 * 1 2 3 32 32 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47285 * 240.00037 * 2 1 3 34 34 H 1.09000 * 109.47642 * 120.00025 * 2 1 3 35 35 H 1.08993 * 110.40801 * 23.73543 * 6 4 3 36 36 H 1.08998 * 110.40089 * 146.05264 * 6 4 3 37 37 H 1.07997 * 126.81522 * 359.97438 * 11 10 8 38 38 H 1.09000 * 109.47937 * 24.80937 * 15 14 13 39 39 H 1.09006 * 109.46792 * 144.80894 * 15 14 13 40 40 H 1.09001 * 109.46943 * 175.29639 * 16 15 14 41 41 H 1.08999 * 109.46657 * 295.29070 * 16 15 14 42 42 H 1.08999 * 109.46899 * 55.28716 * 16 15 14 43 43 H 1.09008 * 110.40342 * 280.80147 * 17 7 6 44 44 H 1.09000 * 110.40441 * 158.37025 * 17 7 6 45 45 H 1.08996 * 109.47158 * 54.99792 * 20 18 4 46 46 H 1.09006 * 109.46792 * 295.00078 * 20 18 4 47 47 H 0.97001 * 119.99571 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00444 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8791 0.5888 -0.4780 6 6 3.9599 1.6134 1.4417 7 7 4.0937 3.0758 1.6375 8 6 3.8020 3.7923 2.7410 9 8 3.9496 4.9995 2.7389 10 6 3.3047 3.1134 3.9493 11 6 3.2644 1.7643 4.1839 12 7 2.7428 1.6099 5.4011 13 7 2.4651 2.7627 5.8967 14 7 2.7802 3.6991 5.0717 15 6 2.6088 5.1369 5.2938 16 6 1.2863 5.5946 4.6752 17 6 4.6203 3.5720 0.3447 18 6 3.8663 2.7515 -0.7238 19 1 2.9936 3.2995 -1.0790 20 6 4.7957 2.4189 -1.8928 21 7 5.1014 3.6430 -2.6373 22 6 5.9164 3.5904 -3.7365 23 1 6.3374 2.6472 -4.0520 24 6 6.2015 4.7494 -4.4452 25 7 6.9852 4.6989 -5.5015 26 14 5.4740 6.3810 -3.8991 27 1 6.3968 7.0378 -2.9387 28 1 5.2835 7.2587 -5.0818 29 1 4.1632 6.1436 -3.2428 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.2472 1.1983 2.1542 36 1 4.9284 1.1241 1.5452 37 1 3.5922 0.9813 3.5162 38 1 2.5988 5.3407 6.3645 39 1 3.4336 5.6772 4.8289 40 1 1.1187 6.6452 4.9121 41 1 1.3284 5.4683 3.5933 42 1 0.4699 4.9961 5.0793 43 1 5.6930 3.3903 0.2764 44 1 4.4057 4.6344 0.2296 45 1 4.3062 1.7041 -2.5542 46 1 5.7200 1.9859 -1.5102 47 1 4.7236 4.4902 -2.3537 48 1 7.1841 5.5087 -5.9969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707138781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:20 Heat of formation + Delta-G solvation = 52.397849 kcal Electronic energy + Delta-G solvation = -30317.230643 eV Core-core repulsion = 26218.030323 eV Total energy + Delta-G solvation = -4099.200320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60924 -40.36543 -38.65960 -36.82394 -35.77169 -34.93225 -32.74431 -31.60954 -31.46026 -31.12391 -29.99118 -28.64044 -26.38087 -24.93388 -24.36476 -23.25585 -22.86920 -22.29680 -21.74199 -20.25721 -19.95728 -17.94028 -17.67194 -17.37862 -16.97322 -16.79097 -16.12073 -15.95307 -15.43794 -15.12380 -14.81371 -14.52880 -14.40155 -14.15608 -13.97887 -13.51604 -13.36797 -13.17735 -12.84392 -12.67859 -12.62101 -12.53734 -12.43296 -12.07154 -11.95925 -11.90694 -11.70617 -11.40257 -11.29677 -11.25651 -10.91201 -10.85385 -10.66019 -10.53937 -10.30394 -10.16921 -9.82903 -9.77869 -9.63724 -8.98654 -8.90752 -7.31639 -5.82029 -3.19009 0.65812 1.72016 2.02046 2.62904 2.80684 3.35725 3.38735 3.41660 3.44462 3.83444 4.04357 4.27960 4.31616 4.47187 4.51297 4.53995 4.55533 4.80529 4.81704 4.87295 4.97537 5.01783 5.10810 5.13419 5.16876 5.18553 5.23151 5.41792 5.42656 5.48526 5.53687 5.55339 5.63049 5.64162 5.66587 5.71937 5.89891 5.92087 5.95180 6.05753 6.11178 6.46633 6.53454 7.09122 7.15369 7.70167 7.91778 8.06004 8.36282 9.14214 9.86625 10.04908 11.36011 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.003418 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.256677 B = 8189.739274 C = 9695.647489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.373 6.373 4 C 0.083 3.917 5 H 0.090 0.910 6 C 0.058 3.942 7 N -0.599 5.599 8 C 0.615 3.385 9 O -0.534 6.534 10 C -0.058 4.058 11 C -0.013 4.013 12 N -0.274 5.274 13 N -0.061 5.061 14 N -0.252 5.252 15 C 0.104 3.896 16 C -0.165 4.165 17 C 0.117 3.883 18 C -0.111 4.111 19 H 0.097 0.903 20 C 0.169 3.831 21 N -0.755 5.755 22 C -0.248 4.248 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.882 3.118 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.206 0.794 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.362 0.638 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -7.295 20.424 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.292 6.292 4 C 0.024 3.976 5 H 0.108 0.892 6 C -0.065 4.065 7 N -0.332 5.332 8 C 0.401 3.599 9 O -0.411 6.411 10 C -0.192 4.192 11 C -0.173 4.173 12 N -0.137 5.137 13 N -0.041 5.041 14 N -0.049 5.049 15 C -0.016 4.016 16 C -0.224 4.224 17 C -0.004 4.004 18 C -0.130 4.130 19 H 0.115 0.885 20 C 0.041 3.959 21 N -0.401 5.401 22 C -0.378 4.378 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.222 0.778 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.195 0.805 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.875 -6.791 21.737 25.683 hybrid contribution 0.108 1.268 -0.784 1.495 sum -11.767 -5.522 20.953 24.657 Atomic orbital electron populations 1.21734 0.93846 1.02165 1.03123 1.22564 0.95662 0.83916 1.00202 1.88025 1.20126 1.26345 1.94701 1.23018 0.81807 0.99248 0.93517 0.89221 1.23555 1.02409 0.81647 0.98895 1.48475 1.63412 1.08701 1.12618 1.16125 0.77798 0.85501 0.80460 1.90819 1.54569 1.12984 1.82765 1.21856 1.10610 0.93756 0.93022 1.24425 1.02723 0.94457 0.95711 1.74914 1.14892 1.15240 1.08651 1.78243 1.17671 0.91297 1.16888 1.47896 1.37326 1.09806 1.09913 1.22426 1.02195 0.72794 1.04203 1.22111 0.95065 1.02778 1.02418 1.22601 0.98590 1.00303 0.78914 1.22527 1.00028 0.94935 0.95547 0.88451 1.20673 0.94832 0.90395 0.89962 1.42691 1.59484 1.04401 1.33492 1.19010 1.20635 0.96160 1.01949 0.89116 1.24663 0.99468 0.97405 0.97306 1.69695 1.40393 1.27914 1.19971 0.86592 0.79145 0.85190 0.77890 1.20891 1.21644 1.20258 0.92107 0.91729 0.91138 0.92855 0.93420 0.88476 0.88892 0.77820 0.87302 0.86023 0.89344 0.91199 0.91639 0.89209 0.89234 0.94849 0.94905 0.80529 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -4.33 9.95 -35.23 -0.35 -4.68 16 4 C 0.08 0.88 3.19 -25.33 -0.08 0.80 16 5 H 0.09 0.80 7.38 -51.93 -0.38 0.42 16 6 C 0.06 0.53 5.70 -2.40 -0.01 0.51 16 7 N -0.60 -7.30 3.32 -170.64 -0.57 -7.87 16 8 C 0.61 8.24 7.89 -12.60 -0.10 8.14 16 9 O -0.53 -8.40 15.23 5.26 0.08 -8.32 16 10 C -0.06 -0.70 6.92 -82.33 -0.57 -1.27 16 11 C -0.01 -0.14 10.44 -17.35 -0.18 -0.33 16 12 N -0.27 -3.50 12.35 30.47 0.38 -3.13 16 13 N -0.06 -0.77 13.14 60.35 0.79 0.02 16 14 N -0.25 -2.91 3.39 -57.37 -0.19 -3.11 16 15 C 0.10 0.90 6.59 -4.04 -0.03 0.88 16 16 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 17 C 0.12 1.61 6.41 -2.41 -0.02 1.59 16 18 C -0.11 -1.52 2.90 -89.22 -0.26 -1.78 16 19 H 0.10 1.51 7.98 -51.93 -0.41 1.09 16 20 C 0.17 2.86 5.38 -4.04 -0.02 2.84 16 21 N -0.75 -16.81 5.28 -59.91 -0.32 -17.13 16 22 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 23 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 24 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 26 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.77 4.50 -51.93 -0.23 0.54 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.21 1.56 5.05 -52.49 -0.26 1.29 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 1.14 6.58 -51.93 -0.34 0.80 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.22 7.75 -51.92 -0.40 0.82 16 44 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.54 7.98 -51.93 -0.41 0.12 16 47 H 0.36 8.00 5.47 -40.82 -0.22 7.77 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -34.51 389.96 -6.08 -40.60 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.33 Total: 5.14 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.52 Total: 3.53 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.87 Total: -59.19 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.27 Total: -13.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.51 -6.08 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707138781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.994 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds