Wall clock time and date at job start Tue Mar 31 2020 20:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42907 * 109.47225 * 2 1 4 4 C 1.42898 * 113.99926 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.30672 * 27.82371 * 4 3 2 6 6 C 1.54393 * 110.43088 * 265.58819 * 4 3 2 7 7 N 1.48150 * 104.61725 * 264.95301 * 6 4 3 8 8 C 1.34772 * 127.83835 * 140.39187 * 7 6 4 9 9 O 1.21615 * 120.00114 * 181.06103 * 8 7 6 10 10 C 1.47243 * 119.99519 * 1.06798 * 8 7 6 11 11 C 1.37000 * 127.19126 * 10.12348 * 10 8 7 12 12 N 1.33326 * 106.37073 * 179.84443 * 11 10 8 13 13 N 1.28511 * 109.43537 * 0.43032 * 12 11 10 14 14 N 1.28715 * 110.64165 * 359.72350 * 13 12 11 15 15 C 1.46498 * 126.03264 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.47302 * 264.80708 * 15 14 13 17 17 C 1.48146 * 104.32314 * 320.41753 * 7 6 4 18 18 C 1.54285 * 110.33997 * 150.00244 * 4 3 2 19 19 H 1.09000 * 110.34319 * 359.97438 * 18 4 3 20 20 C 1.53005 * 110.34290 * 237.84599 * 18 4 3 21 21 N 1.46498 * 109.47399 * 174.99904 * 20 18 4 22 22 C 1.36934 * 120.00056 * 180.27447 * 21 20 18 23 23 H 1.08000 * 120.00139 * 359.72240 * 22 21 20 24 24 C 1.38808 * 119.99938 * 179.72564 * 22 21 20 25 25 N 1.31622 * 120.00165 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00223 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47034 * 90.00016 * 26 24 22 28 28 H 1.48498 * 109.47217 * 210.00120 * 26 24 22 29 29 H 1.48500 * 109.46820 * 330.00006 * 26 24 22 30 30 H 1.09001 * 109.46822 * 299.99910 * 1 2 3 31 31 H 1.08994 * 109.47387 * 59.99648 * 1 2 3 32 32 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47285 * 240.00037 * 2 1 3 34 34 H 1.09000 * 109.47642 * 120.00025 * 2 1 3 35 35 H 1.08993 * 110.40801 * 23.73543 * 6 4 3 36 36 H 1.08998 * 110.40089 * 146.05264 * 6 4 3 37 37 H 1.07997 * 126.81522 * 359.97438 * 11 10 8 38 38 H 1.09000 * 109.47937 * 24.80937 * 15 14 13 39 39 H 1.09006 * 109.46792 * 144.80894 * 15 14 13 40 40 H 1.09001 * 109.46943 * 175.29639 * 16 15 14 41 41 H 1.08999 * 109.46657 * 295.29070 * 16 15 14 42 42 H 1.08999 * 109.46899 * 55.28716 * 16 15 14 43 43 H 1.09008 * 110.40342 * 280.80147 * 17 7 6 44 44 H 1.09000 * 110.40441 * 158.37025 * 17 7 6 45 45 H 1.08996 * 109.47158 * 54.99792 * 20 18 4 46 46 H 1.09006 * 109.46792 * 295.00078 * 20 18 4 47 47 H 0.97001 * 119.99571 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00444 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8791 0.5888 -0.4780 6 6 3.9599 1.6134 1.4417 7 7 4.0937 3.0758 1.6375 8 6 3.8020 3.7923 2.7410 9 8 3.9496 4.9995 2.7389 10 6 3.3047 3.1134 3.9493 11 6 3.2644 1.7643 4.1839 12 7 2.7428 1.6099 5.4011 13 7 2.4651 2.7627 5.8967 14 7 2.7802 3.6991 5.0717 15 6 2.6088 5.1369 5.2938 16 6 1.2863 5.5946 4.6752 17 6 4.6203 3.5720 0.3447 18 6 3.8663 2.7515 -0.7238 19 1 2.9936 3.2995 -1.0790 20 6 4.7957 2.4189 -1.8928 21 7 5.1014 3.6430 -2.6373 22 6 5.9164 3.5904 -3.7365 23 1 6.3374 2.6472 -4.0520 24 6 6.2015 4.7494 -4.4452 25 7 6.9852 4.6989 -5.5015 26 14 5.4740 6.3810 -3.8991 27 1 6.3968 7.0378 -2.9387 28 1 5.2835 7.2587 -5.0818 29 1 4.1632 6.1436 -3.2428 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.2472 1.1983 2.1542 36 1 4.9284 1.1241 1.5452 37 1 3.5922 0.9813 3.5162 38 1 2.5988 5.3407 6.3645 39 1 3.4336 5.6772 4.8289 40 1 1.1187 6.6452 4.9121 41 1 1.3284 5.4683 3.5933 42 1 0.4699 4.9961 5.0793 43 1 5.6930 3.3903 0.2764 44 1 4.4057 4.6344 0.2296 45 1 4.3062 1.7041 -2.5542 46 1 5.7200 1.9859 -1.5102 47 1 4.7236 4.4902 -2.3537 48 1 7.1841 5.5087 -5.9969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707138781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:19 Heat of formation + Delta-G solvation = 27.053522 kcal Electronic energy + Delta-G solvation = -30318.329656 eV Core-core repulsion = 26218.030323 eV Total energy + Delta-G solvation = -4100.299333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.48830 -41.33551 -39.62678 -37.78772 -36.79958 -36.27691 -34.19773 -32.99368 -32.33682 -31.88521 -31.25442 -29.55724 -27.64632 -26.02340 -25.34947 -24.22951 -23.84717 -23.19906 -23.04204 -21.40334 -20.85936 -19.67269 -18.59521 -18.44271 -17.88281 -17.67667 -17.09546 -16.79143 -16.54622 -16.27505 -15.99508 -15.75000 -15.49256 -15.22590 -15.06674 -14.74158 -14.54528 -14.16142 -14.06303 -13.78688 -13.49171 -13.42888 -13.34072 -13.25690 -12.98152 -12.82439 -12.76622 -12.65583 -12.33815 -12.27835 -12.09778 -12.07290 -11.97875 -11.80706 -11.64439 -11.42501 -11.29393 -10.97908 -10.68809 -10.61891 -9.86677 -9.28823 -8.01937 -5.34754 -0.24432 0.88421 1.12800 1.38962 1.40083 1.46784 1.72410 1.84902 2.48182 2.62921 2.97091 3.24588 3.30555 3.39986 3.48584 3.58057 3.70249 3.81326 3.88511 3.97473 4.09573 4.16969 4.23061 4.25327 4.28549 4.36924 4.48009 4.51963 4.56107 4.58262 4.62182 4.70944 4.76427 4.79631 4.86963 4.90682 4.99998 5.02607 5.08423 5.10275 5.24937 5.28442 5.31840 5.77974 6.20126 6.22284 6.34163 6.70810 7.08847 7.16672 7.85201 8.01398 9.19418 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.003418 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.256677 B = 8189.739274 C = 9695.647489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.088 3.912 5 H 0.114 0.886 6 C 0.058 3.942 7 N -0.598 5.598 8 C 0.612 3.388 9 O -0.566 6.566 10 C -0.073 4.073 11 C 0.001 3.999 12 N -0.295 5.295 13 N -0.072 5.072 14 N -0.250 5.250 15 C 0.097 3.903 16 C -0.158 4.158 17 C 0.119 3.881 18 C -0.101 4.101 19 H 0.077 0.923 20 C 0.168 3.832 21 N -0.760 5.760 22 C -0.228 4.228 23 H 0.065 0.935 24 C -0.060 4.060 25 N -0.982 5.982 26 Si 0.945 3.055 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.256 1.256 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.236 0.764 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.035 0.965 46 H 0.048 0.952 47 H 0.363 0.637 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 -8.576 22.555 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.317 6.317 4 C 0.029 3.971 5 H 0.131 0.869 6 C -0.063 4.063 7 N -0.330 5.330 8 C 0.400 3.600 9 O -0.446 6.446 10 C -0.208 4.208 11 C -0.159 4.159 12 N -0.157 5.157 13 N -0.052 5.052 14 N -0.048 5.048 15 C -0.022 4.022 16 C -0.216 4.216 17 C -0.003 4.003 18 C -0.121 4.121 19 H 0.096 0.904 20 C 0.042 3.958 21 N -0.406 5.406 22 C -0.359 4.359 23 H 0.083 0.917 24 C -0.252 4.252 25 N -0.633 5.633 26 Si 0.773 3.227 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.181 1.181 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.252 0.748 38 H 0.153 0.847 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.196 0.804 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.860 -8.127 23.922 28.349 hybrid contribution 0.372 1.557 -1.445 2.156 sum -12.488 -6.571 22.477 26.539 Atomic orbital electron populations 1.21762 0.93842 1.03214 1.02057 1.22784 0.95748 0.82765 1.01686 1.88001 1.20477 1.28351 1.94884 1.22989 0.81903 0.98087 0.94087 0.86872 1.23838 1.04567 0.79814 0.98109 1.48481 1.62714 1.10092 1.11668 1.16307 0.77481 0.85227 0.81013 1.90798 1.55968 1.14393 1.83414 1.21807 1.11739 0.94304 0.92915 1.24916 1.01159 0.94572 0.95260 1.74904 1.15783 1.15430 1.09555 1.78208 1.18120 0.91637 1.17254 1.48163 1.36529 1.10531 1.09548 1.22666 1.02136 0.71511 1.05869 1.22068 0.94676 1.04315 1.00563 1.22446 0.98795 0.99136 0.79887 1.22287 0.98447 0.96765 0.94572 0.90421 1.20846 0.96148 0.88274 0.90552 1.42759 1.58675 1.06449 1.32682 1.19040 1.19541 0.94881 1.02426 0.91676 1.25401 1.00791 1.01115 0.97857 1.69859 1.42913 1.28652 1.21903 0.85559 0.79276 0.80679 0.77197 1.20512 1.22414 1.18126 0.92812 0.93146 0.89055 0.92221 0.90984 0.86968 0.85537 0.74811 0.84690 0.86855 0.86964 0.93725 0.91579 0.88837 0.91449 0.94736 0.93370 0.80376 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.66 6.50 71.98 0.47 1.13 16 3 O -0.40 -8.25 9.95 -148.98 -1.48 -9.74 16 4 C 0.09 1.60 3.19 31.50 0.10 1.70 16 5 H 0.11 1.54 7.38 -2.39 -0.02 1.52 16 6 C 0.06 0.84 5.70 86.54 0.49 1.33 16 7 N -0.60 -13.38 3.32 -812.03 -2.69 -16.08 16 8 C 0.61 15.73 7.89 86.61 0.68 16.42 16 9 O -0.57 -17.76 15.23 -4.08 -0.06 -17.82 16 10 C -0.07 -1.65 6.92 40.41 0.28 -1.37 16 11 C 0.00 0.02 10.44 84.18 0.88 0.90 16 12 N -0.29 -6.91 12.35 -57.50 -0.71 -7.62 16 13 N -0.07 -1.71 13.14 37.02 0.49 -1.23 16 14 N -0.25 -5.44 3.39 -335.41 -1.14 -6.58 16 15 C 0.10 1.58 6.59 86.38 0.57 2.15 16 16 C -0.16 -2.37 10.24 71.98 0.74 -1.64 16 17 C 0.12 3.11 6.41 86.53 0.55 3.67 16 18 C -0.10 -2.60 2.90 -9.89 -0.03 -2.63 16 19 H 0.08 2.35 7.98 -2.39 -0.02 2.33 16 20 C 0.17 5.40 5.38 86.38 0.46 5.86 16 21 N -0.76 -33.20 5.28 -343.45 -1.81 -35.02 16 22 C -0.23 -12.44 10.47 84.03 0.88 -11.56 16 23 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 24 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 25 N -0.98 -62.04 13.97 21.65 0.30 -61.73 16 26 Si 0.94 45.30 27.74 68.60 1.90 47.21 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 1.30 4.50 -2.39 -0.01 1.29 16 36 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.24 2.58 5.05 -2.91 -0.01 2.57 16 38 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 2.08 6.58 -2.38 -0.02 2.07 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 2.38 7.75 -2.38 -0.02 2.36 16 44 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.45 7.98 -2.38 -0.02 1.43 16 47 H 0.36 15.66 5.47 -92.71 -0.51 15.16 16 48 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -76.58 389.96 2.49 -74.09 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.41 Total: 22.96 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 7.29 Total: 11.55 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.57 Total: -128.26 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.55 Total: -27.56 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.21 kcal Total: -76.58 2.49 -74.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707138781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.145 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds