Wall clock time and date at job start Tue Mar 31 2020 20:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47129 * 180.02562 * 11 10 8 13 13 N 1.46910 * 109.47311 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99693 * 66.04734 * 13 12 11 15 15 C 1.46902 * 111.00032 * 190.00207 * 13 12 11 16 16 C 1.50697 * 109.46812 * 170.00134 * 15 13 12 17 17 O 1.21295 * 120.00161 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99706 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99899 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99776 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00198 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99605 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47259 * 59.99743 * 23 21 19 25 25 H 1.48499 * 109.46574 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47084 * 299.99757 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 0.97003 * 119.99485 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47529 * 300.00303 * 11 10 8 39 39 H 1.09002 * 109.46946 * 60.00239 * 11 10 8 40 40 H 1.08996 * 109.47628 * 299.99963 * 12 11 10 41 41 H 1.08999 * 109.47563 * 60.00274 * 12 11 10 42 42 H 1.08994 * 109.47427 * 60.00071 * 14 13 12 43 43 H 1.09004 * 109.46692 * 180.02562 * 14 13 12 44 44 H 1.09003 * 109.46985 * 299.99847 * 14 13 12 45 45 H 1.08998 * 109.46661 * 289.99747 * 15 13 12 46 46 H 1.08998 * 109.47251 * 49.99686 * 15 13 12 47 47 H 0.96995 * 120.00062 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.9374 5.4250 -5.0379 12 6 2.8585 6.7612 -5.7790 13 7 3.2069 6.5590 -7.1918 14 6 2.2038 5.7250 -7.8672 15 6 3.3737 7.8449 -7.8822 16 6 3.9648 7.6087 -9.2481 17 8 4.2223 6.4802 -9.6106 18 7 4.2082 8.6515 -10.0665 19 6 4.7455 8.4366 -11.3094 20 1 4.9740 7.4317 -11.6325 21 6 4.9960 9.5117 -12.1533 22 7 4.7175 10.7342 -11.7604 23 14 5.7288 9.2189 -13.8465 24 1 4.8206 8.3478 -14.6350 25 1 5.8979 10.5188 -14.5441 26 1 7.0508 8.5573 -13.7061 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 2.3579 6.5124 -3.3088 38 1 3.9507 5.0299 -5.1089 39 1 2.2396 4.7182 -5.4871 40 1 1.8453 7.1567 -5.7082 41 1 3.5565 7.4676 -5.3299 42 1 1.2304 6.2124 -7.8137 43 1 2.4865 5.5908 -8.9114 44 1 2.1507 4.7525 -7.3777 45 1 2.4033 8.3304 -7.9852 46 1 4.0402 8.4843 -7.3034 47 1 4.0027 9.5539 -9.7764 48 1 4.8927 11.4848 -12.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713453535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:02 Heat of formation + Delta-G solvation = 15.028547 kcal Electronic energy + Delta-G solvation = -27639.255622 eV Core-core repulsion = 23538.434847 eV Total energy + Delta-G solvation = -4100.820775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46953 -39.63831 -38.60397 -36.76150 -35.04046 -34.53016 -33.77729 -32.04068 -31.23298 -30.16160 -29.54141 -28.16954 -27.54788 -25.26666 -24.02730 -23.37948 -21.40020 -21.18530 -20.99511 -19.61555 -19.14364 -17.83292 -17.37167 -17.14002 -16.21458 -15.98852 -15.92835 -15.58714 -15.16796 -14.76247 -14.67485 -14.58107 -14.17096 -14.01036 -13.76392 -13.59151 -13.51416 -13.26217 -13.08550 -12.84626 -12.70208 -12.45090 -12.23556 -12.09712 -11.80050 -11.73075 -11.49672 -11.35622 -11.24127 -10.99674 -10.90230 -10.72991 -10.42332 -10.19658 -9.96701 -9.45339 -9.44721 -9.10313 -8.78571 -8.45200 -7.96652 -7.86165 -6.39952 -3.80632 1.68932 2.22535 2.46580 2.60345 3.09402 3.21846 3.27313 3.32160 3.92318 4.05342 4.08944 4.29959 4.42693 4.47655 4.56606 4.72230 4.78676 4.86326 4.92761 5.04805 5.09883 5.15368 5.16987 5.26767 5.29339 5.42634 5.44225 5.54254 5.66955 5.67770 5.72512 5.78477 5.90458 5.94710 5.96583 6.05952 6.29001 6.34525 6.39389 6.59342 6.78184 7.23093 7.34940 7.40384 7.53951 7.56968 8.08172 8.17161 8.63908 9.20085 9.56250 10.08426 10.77741 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.001465 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.369243 B =19102.504562 C =19462.431565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.372 5.372 4 C 0.048 3.952 5 C -0.267 4.267 6 C 0.080 3.920 7 C -0.058 4.058 8 C 0.513 3.487 9 O -0.521 6.521 10 N -0.732 5.732 11 C 0.123 3.877 12 C 0.045 3.955 13 N -0.516 5.516 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 N -0.259 5.259 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.015 0.985 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -11.208 29.069 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.155 5.155 4 C -0.097 4.097 5 C -0.296 4.296 6 C -0.088 4.088 7 C -0.099 4.099 8 C 0.298 3.702 9 O -0.395 6.395 10 N -0.385 5.385 11 C -0.001 4.001 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.130 4.130 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.081 5.081 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.537 -13.585 27.572 31.900 hybrid contribution 0.008 1.785 0.176 1.794 sum -8.528 -11.799 27.748 31.335 Atomic orbital electron populations 1.22048 0.93779 1.02853 1.03587 1.21678 0.96111 0.77559 1.03731 1.48746 1.35616 1.10187 1.20982 1.22502 0.95998 0.94816 0.96395 1.21323 1.09778 0.96802 1.01721 1.21498 0.97625 0.94179 0.95463 1.20008 1.04813 0.93430 0.91692 1.20345 0.77704 0.84622 0.87531 1.90771 1.46536 1.23916 1.78280 1.45902 1.71444 1.11149 1.10033 1.21303 1.02184 0.97410 0.79156 1.22254 0.99564 0.96522 0.90054 1.61442 1.47221 1.15306 1.00003 1.22624 0.91240 0.96445 1.02645 1.21864 1.00169 0.90649 0.95714 1.19718 0.85172 0.85938 0.86289 1.90495 1.56698 1.22637 1.76182 1.41851 1.55748 1.07893 1.14608 1.19660 1.37495 0.95274 0.90453 0.87952 1.25246 0.97821 0.94641 1.00170 1.69600 1.48442 0.98399 1.37959 0.85921 0.79592 0.77302 0.81421 1.19938 1.21004 1.19895 1.77386 1.23128 0.96256 1.11364 0.90719 0.92194 0.90968 0.89704 0.88755 0.81127 0.83555 0.87351 0.86913 0.76769 0.90389 0.91283 0.94582 0.90277 0.96632 0.88413 0.91847 0.93369 0.89316 0.77507 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.10 37.16 0.38 -0.59 16 2 C 0.13 0.82 7.23 -4.04 -0.03 0.79 16 3 N -0.37 -3.67 3.68 -61.37 -0.23 -3.89 16 4 C 0.05 0.39 11.45 -17.22 -0.20 0.19 16 5 C -0.27 -2.39 10.72 -40.02 -0.43 -2.82 16 6 C 0.08 0.88 6.01 -82.41 -0.50 0.38 16 7 C -0.06 -0.47 6.28 -29.03 -0.18 -0.65 16 8 C 0.51 6.06 7.82 -10.99 -0.09 5.97 16 9 O -0.52 -8.83 15.56 5.55 0.09 -8.74 16 10 N -0.73 -7.12 5.56 -60.30 -0.33 -7.45 16 11 C 0.12 1.54 5.60 -4.05 -0.02 1.52 16 12 C 0.04 0.55 5.07 -3.82 -0.02 0.53 16 13 N -0.52 -8.61 4.50 -244.37 -1.10 -9.71 16 14 C 0.02 0.30 8.96 60.06 0.54 0.84 16 15 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 16 C 0.44 10.48 7.47 -10.99 -0.08 10.40 16 17 O -0.58 -15.63 13.91 5.54 0.08 -15.55 16 18 N -0.56 -14.29 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 N -0.26 -3.35 11.77 33.67 0.40 -2.96 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.29 8.07 -51.93 -0.42 -0.12 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.56 8.12 -51.93 -0.42 0.13 16 37 H 0.40 2.44 8.47 -40.82 -0.35 2.09 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 40 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.10 1.98 5.83 -51.93 -0.30 1.67 16 44 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -37.77 403.62 -7.74 -45.52 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.47 Total: 9.33 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.90 Total: 9.39 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.60 Total: -62.14 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.16 Total: -24.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.77 -7.74 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713453535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.546 kcal (2) G-P(sol) polarization free energy of solvation -37.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds