Wall clock time and date at job start Tue Mar 31 2020 20:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 C 1.50700 * 109.47162 * 125.23311 * 7 6 5 9 9 O 1.21284 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00344 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47129 * 180.02562 * 11 10 8 13 13 N 1.46910 * 109.47311 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99693 * 66.04734 * 13 12 11 15 15 C 1.46902 * 111.00032 * 190.00207 * 13 12 11 16 16 C 1.50697 * 109.46812 * 170.00134 * 15 13 12 17 17 O 1.21295 * 120.00161 * 359.97438 * 16 15 13 18 18 N 1.34776 * 119.99706 * 180.02562 * 16 15 13 19 19 C 1.37104 * 119.99899 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99776 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00198 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99605 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47259 * 59.99743 * 23 21 19 25 25 H 1.48499 * 109.46574 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47084 * 299.99757 * 23 21 19 27 27 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 28 28 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 31 31 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 32 32 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 33 33 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 34 34 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 35 35 H 1.09000 * 109.46707 * 245.23156 * 7 6 5 36 36 H 1.09002 * 109.47068 * 5.23288 * 7 6 5 37 37 H 0.97003 * 119.99485 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47529 * 300.00303 * 11 10 8 39 39 H 1.09002 * 109.46946 * 60.00239 * 11 10 8 40 40 H 1.08996 * 109.47628 * 299.99963 * 12 11 10 41 41 H 1.08999 * 109.47563 * 60.00274 * 12 11 10 42 42 H 1.08994 * 109.47427 * 60.00071 * 14 13 12 43 43 H 1.09004 * 109.46692 * 180.02562 * 14 13 12 44 44 H 1.09003 * 109.46985 * 299.99847 * 14 13 12 45 45 H 1.08998 * 109.46661 * 289.99747 * 15 13 12 46 46 H 1.08998 * 109.47251 * 49.99686 * 15 13 12 47 47 H 0.96995 * 120.00062 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 6 2.5916 4.5815 -2.7783 9 8 2.8813 3.4740 -3.1789 10 7 2.5893 5.6266 -3.6293 11 6 2.9374 5.4250 -5.0379 12 6 2.8585 6.7612 -5.7790 13 7 3.2069 6.5590 -7.1918 14 6 2.2038 5.7250 -7.8672 15 6 3.3737 7.8449 -7.8822 16 6 3.9648 7.6087 -9.2481 17 8 4.2223 6.4802 -9.6106 18 7 4.2082 8.6515 -10.0665 19 6 4.7455 8.4366 -11.3094 20 1 4.9740 7.4317 -11.6325 21 6 4.9960 9.5117 -12.1533 22 7 4.7175 10.7342 -11.7604 23 14 5.7288 9.2189 -13.8465 24 1 4.8206 8.3478 -14.6350 25 1 5.8979 10.5188 -14.5441 26 1 7.0508 8.5573 -13.7061 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3185 1.4127 1.7363 34 1 3.6964 3.9234 1.0680 35 1 1.2209 5.1846 -1.2579 36 1 2.9324 5.4952 -0.8801 37 1 2.3579 6.5124 -3.3088 38 1 3.9507 5.0299 -5.1089 39 1 2.2396 4.7182 -5.4871 40 1 1.8453 7.1567 -5.7082 41 1 3.5565 7.4676 -5.3299 42 1 1.2304 6.2124 -7.8137 43 1 2.4865 5.5908 -8.9114 44 1 2.1507 4.7525 -7.3777 45 1 2.4033 8.3304 -7.9852 46 1 4.0402 8.4843 -7.3034 47 1 4.0027 9.5539 -9.7764 48 1 4.8927 11.4848 -12.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713453535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:01 Heat of formation + Delta-G solvation = -15.540042 kcal Electronic energy + Delta-G solvation = -27640.581176 eV Core-core repulsion = 23538.434847 eV Total energy + Delta-G solvation = -4102.146328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11631 -40.64100 -40.26326 -38.16409 -36.00873 -35.61084 -35.40449 -33.26661 -32.69811 -30.97841 -30.43199 -29.27243 -28.60718 -26.96490 -25.35026 -24.11043 -22.32772 -21.99875 -21.87624 -20.95855 -20.35252 -19.84064 -18.13052 -17.95243 -17.60350 -17.20578 -16.93083 -16.54483 -16.33284 -16.24753 -15.98531 -15.64227 -15.32540 -15.08549 -15.01742 -14.74325 -14.49251 -14.27942 -14.19363 -13.77604 -13.57870 -13.42962 -13.29200 -13.03174 -12.94788 -12.90997 -12.83106 -12.55368 -12.54604 -12.40739 -12.23210 -12.14008 -12.07089 -11.44493 -11.41150 -10.93829 -10.28152 -10.16381 -10.05946 -9.98075 -9.41684 -9.22977 -8.44843 -5.93138 1.05196 1.40490 1.42310 1.52898 1.67639 1.71778 1.78678 2.08137 2.20446 2.33689 2.95670 3.22199 3.44086 3.51647 3.84804 3.87911 3.98695 4.07075 4.08696 4.17782 4.27226 4.34120 4.36101 4.37482 4.48368 4.54302 4.57142 4.63755 4.64874 4.70007 4.80835 4.88849 4.90524 4.96214 4.98172 5.15383 5.20327 5.23559 5.42296 5.43573 5.77041 5.86628 6.05701 6.18094 6.25810 6.62349 6.63694 6.87581 7.15387 7.34866 7.59138 8.15885 8.72223 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.001465 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.369243 B =19102.504562 C =19462.431565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.382 5.382 4 C 0.050 3.950 5 C -0.283 4.283 6 C 0.060 3.940 7 C -0.050 4.050 8 C 0.510 3.490 9 O -0.580 6.580 10 N -0.713 5.713 11 C 0.132 3.868 12 C 0.054 3.946 13 N -0.541 5.541 14 C 0.025 3.975 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.274 1.274 27 N -0.317 5.317 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.211 0.789 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.420 0.580 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -9.896 31.533 34.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.166 5.166 4 C -0.095 4.095 5 C -0.312 4.312 6 C -0.107 4.107 7 C -0.091 4.091 8 C 0.296 3.704 9 O -0.459 6.459 10 N -0.368 5.368 11 C 0.007 3.993 12 C -0.074 4.074 13 N -0.266 5.266 14 C -0.123 4.123 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.199 1.199 27 N -0.140 5.140 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.228 0.772 34 H 0.188 0.812 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.765 -12.207 30.072 33.618 hybrid contribution 0.061 1.300 -0.513 1.399 sum -8.704 -10.907 29.559 32.687 Atomic orbital electron populations 1.21979 0.93716 1.03817 1.01993 1.21971 0.96277 0.76539 1.05070 1.49049 1.35973 1.10728 1.20813 1.23217 0.94805 0.94899 0.96603 1.21730 1.10109 0.97856 1.01522 1.22064 0.97638 0.94678 0.96317 1.20153 1.07112 0.93242 0.88630 1.21069 0.76356 0.83857 0.89069 1.90750 1.49321 1.26348 1.79496 1.45689 1.70425 1.12025 1.08636 1.21015 1.00115 0.97400 0.80769 1.22252 1.01655 0.96470 0.86994 1.61325 1.48124 1.14992 1.02151 1.22446 0.92147 0.97394 1.00285 1.21736 1.01422 0.91646 0.92182 1.20855 0.83645 0.84823 0.88074 1.90477 1.57996 1.24290 1.77576 1.41907 1.56283 1.08572 1.14341 1.19612 1.39728 0.94663 0.92398 0.90519 1.25980 0.97604 0.94227 1.03242 1.69654 1.48405 0.98825 1.39109 0.85024 0.78573 0.77719 0.77221 1.19853 1.19374 1.19901 1.77298 1.25327 0.97785 1.13577 0.88442 0.92175 0.94022 0.90750 0.84960 0.77236 0.81211 0.84989 0.83197 0.74185 0.93137 0.93193 0.91955 0.87980 0.94593 0.92552 0.91242 0.90878 0.86557 0.76913 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.10 71.98 0.73 -1.10 16 2 C 0.12 1.46 7.23 86.38 0.62 2.09 16 3 N -0.38 -7.37 3.68 -348.06 -1.28 -8.65 16 4 C 0.05 0.72 11.45 83.54 0.96 1.68 16 5 C -0.28 -4.59 10.72 21.99 0.24 -4.36 16 6 C 0.06 1.27 6.01 43.10 0.26 1.53 16 7 C -0.05 -0.72 6.28 29.10 0.18 -0.54 16 8 C 0.51 11.70 7.82 87.66 0.69 12.38 16 9 O -0.58 -20.41 15.56 -3.04 -0.05 -20.46 16 10 N -0.71 -12.60 5.56 -463.08 -2.57 -15.17 16 11 C 0.13 3.20 5.60 86.38 0.48 3.69 16 12 C 0.05 1.16 5.07 86.30 0.44 1.60 16 13 N -0.54 -17.40 4.50 -927.05 -4.17 -21.58 16 14 C 0.03 0.84 8.96 127.69 1.14 1.99 16 15 C 0.06 2.04 5.45 85.56 0.47 2.51 16 16 C 0.44 20.95 7.47 87.66 0.66 21.60 16 17 O -0.62 -34.70 13.91 -3.08 -0.04 -34.74 16 18 N -0.57 -29.40 5.29 -306.98 -1.62 -31.03 16 19 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 23 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 N -0.32 -8.38 11.77 -47.39 -0.56 -8.94 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 0.52 8.07 -2.39 -0.02 0.50 16 33 H 0.21 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.15 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.42 3.71 8.47 -92.71 -0.79 2.93 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.41 6.55 -2.39 -0.02 1.40 16 40 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.10 1.78 7.93 -2.39 -0.02 1.76 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.36 5.83 -2.38 -0.01 2.35 16 44 H 0.07 2.18 6.47 -2.39 -0.02 2.17 16 45 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 46 H 0.12 3.28 7.93 -2.39 -0.02 3.26 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -87.85 403.62 -0.38 -88.23 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.53 Total: 31.51 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 8.14 Total: 24.64 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -9.92 Total: -134.50 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.09 Total: -55.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -87.85 -0.38 -88.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713453535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.688 kcal (2) G-P(sol) polarization free energy of solvation -87.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds