Wall clock time and date at job start Tue Mar 31 2020 19:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 O 1.21280 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99815 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99939 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47343 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.47168 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99693 * 66.05161 * 10 9 8 12 12 C 1.46903 * 110.99643 * 190.00117 * 10 9 8 13 13 C 1.50702 * 109.46834 * 170.00590 * 12 10 9 14 14 O 1.21289 * 120.00140 * 359.97438 * 13 12 10 15 15 N 1.34778 * 119.99744 * 180.02562 * 13 12 10 16 16 C 1.37097 * 119.99571 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99998 * 180.02562 * 16 15 13 19 19 N 1.31403 * 120.00370 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47223 * 90.00027 * 20 18 16 22 22 H 1.48498 * 109.47086 * 210.00104 * 20 18 16 23 23 H 1.48506 * 109.47376 * 330.00253 * 20 18 16 24 24 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 25 25 C 1.34950 * 126.04099 * 34.71284 * 24 2 1 26 26 C 1.35315 * 107.74423 * 179.83807 * 25 24 2 27 27 C 1.39871 * 107.92375 * 0.42973 * 26 25 24 28 28 N 1.30831 * 108.19955 * 359.73088 * 27 26 25 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 34 34 H 0.96998 * 120.00301 * 0.02562 * 7 5 4 35 35 H 1.09003 * 109.47209 * 299.99513 * 8 7 5 36 36 H 1.09000 * 109.47689 * 59.99911 * 8 7 5 37 37 H 1.09000 * 109.46872 * 300.00418 * 9 8 7 38 38 H 1.09001 * 109.46455 * 59.99878 * 9 8 7 39 39 H 1.09001 * 109.47097 * 59.99687 * 11 10 9 40 40 H 1.09000 * 109.46530 * 179.97438 * 11 10 9 41 41 H 1.09005 * 109.46949 * 299.99713 * 11 10 9 42 42 H 1.09000 * 109.46924 * 290.00380 * 12 10 9 43 43 H 1.08998 * 109.47241 * 50.00438 * 12 10 9 44 44 H 0.97001 * 120.00136 * 359.97438 * 15 13 12 45 45 H 0.97001 * 120.00365 * 179.97438 * 19 18 16 46 46 H 1.07998 * 126.12520 * 0.02562 * 25 24 2 47 47 H 1.07999 * 126.03675 * 180.16099 * 26 25 24 48 48 H 1.07996 * 125.89659 * 179.71517 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5984 0.3654 -4.8932 9 6 2.1094 -0.3553 -6.1424 10 7 1.7207 0.4034 -7.3388 11 6 2.4027 1.7038 -7.3821 12 6 1.9828 -0.3694 -8.5603 13 6 1.3535 0.3264 -9.7397 14 8 0.7460 1.3638 -9.5784 15 7 1.4648 -0.2045 -10.9734 16 6 0.8919 0.4283 -12.0462 17 1 0.3510 1.3519 -11.9026 18 6 1.0061 -0.1193 -13.3182 19 7 0.4566 0.4869 -14.3463 20 14 1.9411 -1.7173 -13.5664 21 1 1.0076 -2.8638 -13.4271 22 1 2.5443 -1.7322 -14.9233 23 1 3.0147 -1.8264 -12.5462 24 7 2.0183 -0.6906 1.1962 25 6 1.4372 -1.7526 1.7927 26 6 2.1966 -2.0928 2.8597 27 6 3.2734 -1.2024 2.9231 28 7 3.1676 -0.3615 1.9264 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 2.4893 -1.2154 -3.7907 35 1 0.5121 0.4436 -4.9373 36 1 2.0330 1.3639 -4.8470 37 1 3.1957 -0.4332 -6.0980 38 1 1.6750 -1.3539 -6.1888 39 1 3.4813 1.5479 -7.4021 40 1 2.0974 2.2445 -8.2779 41 1 2.1358 2.2836 -6.4985 42 1 3.0587 -0.4482 -8.7166 43 1 1.5566 -1.3674 -8.4574 44 1 1.9503 -1.0343 -11.1024 45 1 0.5367 0.1048 -15.2343 46 1 0.5304 -2.2447 1.4736 47 1 2.0028 -2.9053 3.5443 48 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713473323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:13 Heat of formation + Delta-G solvation = -5.680237 kcal Electronic energy + Delta-G solvation = -27841.134761 eV Core-core repulsion = 23739.415986 eV Total energy + Delta-G solvation = -4101.718775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15143 -40.93724 -40.46333 -38.29624 -36.49507 -35.98837 -35.49695 -33.74490 -31.67386 -30.94038 -30.49011 -29.38822 -28.55152 -26.94287 -25.29565 -24.19207 -22.31135 -21.95329 -21.70186 -21.23117 -20.67728 -20.16750 -18.62590 -17.84462 -17.55275 -17.24640 -17.04617 -16.77825 -16.44641 -16.29709 -15.74855 -15.58201 -15.48804 -15.17176 -14.93086 -14.80635 -14.56102 -14.36410 -14.23579 -14.01787 -13.84002 -13.69906 -13.50307 -13.10482 -12.98490 -12.85368 -12.56630 -12.56029 -12.48042 -12.39560 -12.22732 -12.09873 -11.96558 -11.57968 -11.45970 -11.03352 -10.39312 -10.36303 -10.22118 -10.12514 -9.50355 -9.25069 -8.39777 -6.00755 1.00188 1.30907 1.37180 1.43294 1.45954 1.54985 1.98205 1.99934 2.09298 2.24611 2.77363 3.16147 3.28597 3.42959 3.60000 3.78282 3.90052 4.01095 4.06516 4.13243 4.13920 4.17201 4.35476 4.42895 4.44373 4.47571 4.48691 4.62036 4.62899 4.73565 4.78754 4.84034 4.88239 4.96585 4.98163 5.17462 5.20552 5.21426 5.38364 5.54376 5.78998 5.87619 5.99336 6.14721 6.16884 6.48259 6.61623 6.82211 6.90634 7.19182 7.41963 8.00220 8.78032 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.001500 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.330918 B =18658.161684 C =19009.343545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.176 3.824 3 H 0.083 0.917 4 C -0.139 4.139 5 C 0.519 3.481 6 O -0.576 6.576 7 N -0.711 5.711 8 C 0.128 3.872 9 C 0.052 3.948 10 N -0.542 5.542 11 C 0.023 3.977 12 C 0.057 3.943 13 C 0.449 3.551 14 O -0.608 6.608 15 N -0.592 5.592 16 C -0.328 4.328 17 H 0.053 0.947 18 C -0.016 4.016 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.256 1.256 22 H -0.277 1.277 23 H -0.229 1.229 24 N -0.374 5.374 25 C 0.055 3.945 26 C -0.285 4.285 27 C 0.036 3.964 28 N -0.346 5.346 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.419 0.581 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.202 0.798 47 H 0.168 0.832 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -15.036 32.823 37.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.102 0.898 4 C -0.180 4.180 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.364 5.364 8 C 0.003 3.997 9 C -0.075 4.075 10 N -0.267 5.267 11 C -0.125 4.125 12 C -0.074 4.074 13 C 0.236 3.764 14 O -0.492 6.492 15 N -0.234 5.234 16 C -0.458 4.458 17 H 0.071 0.929 18 C -0.214 4.214 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.181 1.181 22 H -0.203 1.203 23 H -0.152 1.152 24 N -0.157 5.157 25 C -0.090 4.090 26 C -0.314 4.314 27 C -0.149 4.149 28 N -0.167 5.167 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.145 0.855 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.219 0.781 47 H 0.185 0.815 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.541 -12.422 32.100 35.236 hybrid contribution 0.828 -1.151 -0.605 1.542 sum 8.369 -13.573 31.496 35.302 Atomic orbital electron populations 1.22245 0.91351 1.04303 1.04050 1.20847 0.95816 0.95908 0.80097 0.89837 1.21975 1.04575 1.01300 0.90115 1.20645 0.78512 0.85173 0.85139 1.90729 1.41510 1.26231 1.87064 1.45715 1.57565 1.28303 1.04851 1.21113 1.00096 0.95009 0.83443 1.22268 0.99793 0.97910 0.87548 1.61313 1.59887 1.04131 1.01398 1.22468 0.95761 0.91367 1.02894 1.21837 1.00242 0.97934 0.87347 1.20976 0.84127 0.86747 0.84501 1.90532 1.46539 1.26835 1.85269 1.42020 1.50625 1.24332 1.06397 1.18994 1.32348 1.07815 0.86604 0.92877 1.26133 0.98359 1.03061 0.93887 1.69809 1.45562 1.41940 1.00411 0.85348 0.79397 0.77214 0.79425 1.18085 1.20260 1.15204 1.48973 1.19303 1.24858 1.22570 1.23100 1.00420 0.90466 0.95057 1.21882 0.98804 1.06921 1.03796 1.24403 1.00149 0.93401 0.96958 1.77359 1.04639 1.25475 1.09221 0.91996 0.89757 0.89517 0.87295 0.85173 0.74377 0.92366 0.92701 0.91942 0.87774 0.94349 0.92883 0.90999 0.89966 0.85520 0.77437 0.91209 0.78111 0.81492 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.57 71.98 0.62 -1.39 16 2 C 0.18 2.54 3.05 44.99 0.14 2.67 16 3 H 0.08 1.66 7.95 -2.39 -0.02 1.64 16 4 C -0.14 -1.40 5.50 29.85 0.16 -1.24 16 5 C 0.52 8.38 7.55 87.66 0.66 9.04 16 6 O -0.58 -14.56 13.97 -3.03 -0.04 -14.60 16 7 N -0.71 -8.99 5.56 -463.05 -2.57 -11.57 16 8 C 0.13 2.42 5.60 86.38 0.48 2.91 16 9 C 0.05 0.88 5.07 86.30 0.44 1.32 16 10 N -0.54 -15.02 4.50 -927.01 -4.17 -19.19 16 11 C 0.02 0.69 8.96 127.69 1.14 1.83 16 12 C 0.06 1.61 5.45 85.56 0.47 2.07 16 13 C 0.45 19.68 7.47 87.66 0.66 20.34 16 14 O -0.61 -33.28 13.91 -3.06 -0.04 -33.33 16 15 N -0.59 -27.18 5.09 -306.98 -1.56 -28.74 16 16 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 17 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 18 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 19 N -0.94 -56.32 13.96 21.66 0.30 -56.01 16 20 Si 0.97 37.88 27.74 68.60 1.90 39.78 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 24 N -0.37 -5.72 3.53 -327.49 -1.16 -6.88 16 25 C 0.06 0.58 10.59 83.54 0.88 1.47 16 26 C -0.28 -3.12 10.80 21.99 0.24 -2.88 16 27 C 0.04 0.51 12.03 85.24 1.03 1.54 16 28 N -0.35 -6.79 12.58 -57.03 -0.72 -7.51 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.44 5.95 -2.39 -0.01 1.42 16 31 H 0.09 0.60 7.15 -2.39 -0.02 0.58 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.42 2.21 8.47 -92.71 -0.79 1.42 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.24 6.55 -2.39 -0.02 1.23 16 37 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 38 H 0.10 1.29 7.93 -2.39 -0.02 1.27 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 2.08 5.82 -2.39 -0.01 2.07 16 41 H 0.07 1.98 6.47 -2.38 -0.02 1.96 16 42 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 43 H 0.13 2.70 7.93 -2.39 -0.02 2.68 16 44 H 0.39 14.54 5.76 -92.71 -0.53 14.00 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.20 0.68 7.26 -2.91 -0.02 0.66 16 47 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 48 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -87.49 393.87 -0.21 -87.70 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.39 Total: 31.28 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 8.24 Total: 19.05 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -9.88 Total: -129.89 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.08 Total: -47.92 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.90 Total: 39.78 kcal Total: -87.49 -0.21 -87.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713473323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.024 kcal (2) G-P(sol) polarization free energy of solvation -87.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds