Wall clock time and date at job start Tue Mar 31 2020 19:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 C 1.50706 * 109.46653 * 294.99806 * 4 2 1 6 6 O 1.21278 * 120.00172 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00089 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47098 * 180.02562 * 8 7 5 10 10 N 1.46907 * 109.47313 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00052 * 66.04035 * 10 9 8 12 12 C 1.46896 * 111.00152 * 189.99799 * 10 9 8 13 13 C 1.50695 * 109.47063 * 169.99616 * 12 10 9 14 14 O 1.21297 * 120.00124 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00356 * 180.02562 * 13 12 10 16 16 C 1.37097 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00120 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99834 * 180.02562 * 16 15 13 19 19 N 1.31419 * 119.99826 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00278 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47159 * 59.99511 * 20 18 16 22 22 H 1.48496 * 109.47517 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47062 * 300.00139 * 20 18 16 24 24 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 25 25 C 1.34944 * 126.04045 * 325.00108 * 24 2 1 26 26 C 1.35316 * 107.74738 * 179.97438 * 25 24 2 27 27 C 1.39869 * 107.91811 * 359.97438 * 26 25 24 28 28 N 1.30840 * 108.20664 * 359.74359 * 27 26 25 29 29 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 32 32 H 1.08993 * 109.47016 * 54.99791 * 4 2 1 33 33 H 1.08994 * 109.46972 * 175.00054 * 4 2 1 34 34 H 0.97004 * 120.00015 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47239 * 300.00336 * 8 7 5 36 36 H 1.09003 * 109.46724 * 60.00516 * 8 7 5 37 37 H 1.09001 * 109.47096 * 300.00112 * 9 8 7 38 38 H 1.08994 * 109.47510 * 59.99975 * 9 8 7 39 39 H 1.09009 * 109.46674 * 60.00370 * 11 10 9 40 40 H 1.08995 * 109.47438 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47784 * 300.00817 * 11 10 9 42 42 H 1.08989 * 109.47485 * 289.99763 * 12 10 9 43 43 H 1.09004 * 109.47274 * 50.00179 * 12 10 9 44 44 H 0.96998 * 119.99463 * 0.02562 * 15 13 12 45 45 H 0.96993 * 119.99761 * 180.02562 * 19 18 16 46 46 H 1.08001 * 126.12529 * 359.96232 * 25 24 2 47 47 H 1.07997 * 126.03924 * 180.02562 * 26 25 24 48 48 H 1.08006 * 125.89543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0869 2.3633 7 7 1.9843 -0.3920 3.7002 8 6 1.5973 0.3649 4.8933 9 6 2.1071 -0.3564 6.1425 10 7 1.7185 0.4022 7.3390 11 6 0.2593 0.4063 7.5087 12 6 2.3863 -0.1249 8.5365 13 6 2.1625 0.8165 9.6918 14 8 1.5104 1.8269 9.5333 15 7 2.6870 0.5358 10.9012 16 6 2.4829 1.3920 11.9523 17 1 1.9023 2.2915 11.8112 18 6 3.0241 1.1029 13.1990 19 7 3.7311 0.0085 13.3706 20 14 2.7467 2.2697 14.6311 21 1 1.2902 2.3951 14.8925 22 1 3.4224 1.7373 15.8415 23 1 3.3064 3.6042 14.2978 24 7 2.0184 -0.6907 -1.1962 25 6 1.4403 -1.7559 -1.7895 26 6 2.1962 -2.0923 -2.8602 27 6 3.2729 -1.2017 -2.9237 28 7 3.1641 -0.3574 -1.9301 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 2.4882 -1.2159 3.7908 35 1 2.0327 1.3631 4.8474 36 1 0.5110 0.4439 4.9368 37 1 1.6721 -1.3548 6.1885 38 1 3.1933 -0.4352 6.0987 39 1 -0.0971 -0.6185 7.6136 40 1 -0.0010 0.9743 8.4019 41 1 -0.2067 0.8656 6.6370 42 1 1.9748 -1.1040 8.7808 43 1 3.4554 -0.2175 8.3452 44 1 3.2088 -0.2720 11.0278 45 1 4.1086 -0.1935 14.2409 46 1 0.5363 -2.2514 -1.4674 47 1 2.0020 -2.9044 -3.5452 48 1 4.0565 -1.2075 -3.6670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713473324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:17 Heat of formation + Delta-G solvation = 16.730294 kcal Electronic energy + Delta-G solvation = -27782.630513 eV Core-core repulsion = 23681.883532 eV Total energy + Delta-G solvation = -4100.746981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59744 -40.16405 -38.70850 -36.97651 -35.78783 -34.74311 -33.83815 -31.28563 -30.95924 -30.30503 -29.69744 -28.19888 -27.60805 -25.34890 -24.18257 -23.41261 -21.41206 -21.33269 -20.94838 -20.08430 -19.20116 -18.00344 -17.87955 -16.96471 -16.53352 -16.25619 -15.95854 -15.58586 -15.26589 -15.02821 -14.67434 -14.61087 -14.33204 -14.06917 -13.95723 -13.62181 -13.47305 -13.35369 -13.28602 -13.12701 -12.94371 -12.32437 -12.16842 -11.99082 -11.86750 -11.68038 -11.54068 -11.44248 -11.31393 -11.10849 -11.01254 -10.94899 -10.45344 -10.25515 -10.22431 -9.78613 -9.49027 -9.33344 -8.97299 -8.51871 -8.01933 -7.92724 -6.43693 -3.84559 1.53401 2.01154 2.25464 2.51616 2.84678 3.18934 3.24879 3.29350 3.87265 3.98302 4.00480 4.16399 4.23305 4.38916 4.46750 4.59113 4.67635 4.79349 4.89734 4.93763 4.96122 5.07703 5.22138 5.23861 5.31899 5.32562 5.33301 5.50541 5.58203 5.63481 5.66099 5.71990 5.77478 5.83526 5.87947 5.95057 6.11893 6.24295 6.30143 6.50977 6.66106 7.08432 7.17273 7.27205 7.37584 7.53382 7.84630 8.03960 8.59495 9.16070 9.51817 10.03651 10.73924 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038694 B = 0.001435 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.446889 B =19501.924516 C =19792.549807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.175 3.825 3 H 0.112 0.888 4 C -0.154 4.154 5 C 0.520 3.480 6 O -0.534 6.534 7 N -0.726 5.726 8 C 0.121 3.879 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.018 3.982 12 C 0.047 3.953 13 C 0.443 3.557 14 O -0.577 6.577 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.367 5.367 25 C 0.055 3.945 26 C -0.277 4.277 27 C 0.042 3.958 28 N -0.297 5.297 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.171 0.829 47 H 0.146 0.854 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -10.323 -28.088 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.195 4.195 5 C 0.305 3.695 6 O -0.411 6.411 7 N -0.378 5.378 8 C -0.003 4.003 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.461 6.461 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.150 5.150 25 C -0.092 4.092 26 C -0.307 4.307 27 C -0.144 4.144 28 N -0.117 5.117 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.189 0.811 47 H 0.164 0.836 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.151 -7.381 -27.422 28.572 hybrid contribution -0.003 -2.172 0.595 2.252 sum -3.155 -9.553 -26.827 28.651 Atomic orbital electron populations 1.22335 0.92058 1.03012 1.05257 1.20940 0.95340 0.97031 0.79355 0.86952 1.22074 1.04262 1.00713 0.92474 1.20176 0.79430 0.85621 0.84266 1.90727 1.39627 1.24237 1.86474 1.45927 1.57903 1.27924 1.06018 1.21382 1.00706 0.95996 0.82185 1.22254 1.01056 0.94839 0.90344 1.61439 1.08592 1.52739 1.01153 1.22630 0.86406 0.99472 1.04454 1.21865 0.99775 0.96291 0.90469 1.19696 0.85359 0.88427 0.83721 1.90495 1.43639 1.28505 1.83431 1.41852 1.47077 1.23292 1.07771 1.19657 1.31405 1.04481 0.87403 0.87927 1.25256 0.96480 0.97195 0.98933 1.69604 1.34783 1.24779 1.25180 0.85914 0.78627 0.79968 0.79697 1.19920 1.20984 1.19866 1.48964 1.19655 1.23971 1.22366 1.22522 0.99842 0.91334 0.95453 1.21528 0.99290 1.06616 1.03229 1.23917 0.99317 0.93802 0.97331 1.77419 1.03072 1.23588 1.07663 0.92097 0.87857 0.91509 0.88194 0.87858 0.76562 0.90060 0.90972 0.94564 0.90254 0.96633 0.88324 0.91862 0.93342 0.89316 0.77505 0.91823 0.81149 0.83628 0.80114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 8.58 37.16 0.32 -0.82 16 2 C 0.18 1.37 3.05 -67.92 -0.21 1.16 16 3 H 0.11 1.08 7.96 -51.93 -0.41 0.67 16 4 C -0.15 -0.99 5.50 -27.88 -0.15 -1.14 16 5 C 0.52 4.73 7.55 -10.98 -0.08 4.65 16 6 O -0.53 -6.80 13.96 5.56 0.08 -6.72 16 7 N -0.73 -5.86 5.56 -60.30 -0.33 -6.20 16 8 C 0.12 1.31 5.60 -4.05 -0.02 1.29 16 9 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 10 N -0.52 -8.12 4.50 -244.38 -1.10 -9.22 16 11 C 0.02 0.28 8.96 60.06 0.54 0.82 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.22 7.47 -10.99 -0.08 10.14 16 14 O -0.58 -15.29 13.91 5.54 0.08 -15.21 16 15 N -0.56 -14.01 5.29 -10.97 -0.06 -14.07 16 16 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 19 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 20 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 N -0.37 -3.13 3.53 -54.86 -0.19 -3.32 16 25 C 0.05 0.37 10.59 -17.22 -0.18 0.19 16 26 C -0.28 -1.89 10.80 -40.01 -0.43 -2.32 16 27 C 0.04 0.34 12.02 -17.36 -0.21 0.13 16 28 N -0.30 -3.08 12.58 30.63 0.39 -2.70 16 29 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 30 H 0.10 0.87 5.95 -51.93 -0.31 0.57 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 2.09 8.47 -40.82 -0.35 1.74 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 37 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 39 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 40 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 41 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 42 H 0.05 0.75 8.12 -51.94 -0.42 0.32 16 43 H 0.09 1.35 7.93 -51.93 -0.41 0.93 16 44 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.17 0.64 7.26 -52.49 -0.38 0.26 16 47 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -34.41 397.00 -7.52 -41.93 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.26 Total: 9.73 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.80 Total: 7.44 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.58 Total: -59.01 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.15 Total: -21.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.41 -7.52 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713473324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.665 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds