Wall clock time and date at job start Tue Mar 31 2020 19:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 C 1.50706 * 109.46653 * 294.99806 * 4 2 1 6 6 O 1.21278 * 120.00172 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00089 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47098 * 180.02562 * 8 7 5 10 10 N 1.46907 * 109.47313 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00052 * 66.04035 * 10 9 8 12 12 C 1.46896 * 111.00152 * 189.99799 * 10 9 8 13 13 C 1.50695 * 109.47063 * 169.99616 * 12 10 9 14 14 O 1.21297 * 120.00124 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00356 * 180.02562 * 13 12 10 16 16 C 1.37097 * 120.00073 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00120 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99834 * 180.02562 * 16 15 13 19 19 N 1.31419 * 119.99826 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00278 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47159 * 59.99511 * 20 18 16 22 22 H 1.48496 * 109.47517 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47062 * 300.00139 * 20 18 16 24 24 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 25 25 C 1.34944 * 126.04045 * 325.00108 * 24 2 1 26 26 C 1.35316 * 107.74738 * 179.97438 * 25 24 2 27 27 C 1.39869 * 107.91811 * 359.97438 * 26 25 24 28 28 N 1.30840 * 108.20664 * 359.74359 * 27 26 25 29 29 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 32 32 H 1.08993 * 109.47016 * 54.99791 * 4 2 1 33 33 H 1.08994 * 109.46972 * 175.00054 * 4 2 1 34 34 H 0.97004 * 120.00015 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47239 * 300.00336 * 8 7 5 36 36 H 1.09003 * 109.46724 * 60.00516 * 8 7 5 37 37 H 1.09001 * 109.47096 * 300.00112 * 9 8 7 38 38 H 1.08994 * 109.47510 * 59.99975 * 9 8 7 39 39 H 1.09009 * 109.46674 * 60.00370 * 11 10 9 40 40 H 1.08995 * 109.47438 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47784 * 300.00817 * 11 10 9 42 42 H 1.08989 * 109.47485 * 289.99763 * 12 10 9 43 43 H 1.09004 * 109.47274 * 50.00179 * 12 10 9 44 44 H 0.96998 * 119.99463 * 0.02562 * 15 13 12 45 45 H 0.96993 * 119.99761 * 180.02562 * 19 18 16 46 46 H 1.08001 * 126.12529 * 359.96232 * 25 24 2 47 47 H 1.07997 * 126.03924 * 180.02562 * 26 25 24 48 48 H 1.08006 * 125.89543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0869 2.3633 7 7 1.9843 -0.3920 3.7002 8 6 1.5973 0.3649 4.8933 9 6 2.1071 -0.3564 6.1425 10 7 1.7185 0.4022 7.3390 11 6 0.2593 0.4063 7.5087 12 6 2.3863 -0.1249 8.5365 13 6 2.1625 0.8165 9.6918 14 8 1.5104 1.8269 9.5333 15 7 2.6870 0.5358 10.9012 16 6 2.4829 1.3920 11.9523 17 1 1.9023 2.2915 11.8112 18 6 3.0241 1.1029 13.1990 19 7 3.7311 0.0085 13.3706 20 14 2.7467 2.2697 14.6311 21 1 1.2902 2.3951 14.8925 22 1 3.4224 1.7373 15.8415 23 1 3.3064 3.6042 14.2978 24 7 2.0184 -0.6907 -1.1962 25 6 1.4403 -1.7559 -1.7895 26 6 2.1962 -2.0923 -2.8602 27 6 3.2729 -1.2017 -2.9237 28 7 3.1641 -0.3574 -1.9301 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 2.4882 -1.2159 3.7908 35 1 2.0327 1.3631 4.8474 36 1 0.5110 0.4439 4.9368 37 1 1.6721 -1.3548 6.1885 38 1 3.1933 -0.4352 6.0987 39 1 -0.0971 -0.6185 7.6136 40 1 -0.0010 0.9743 8.4019 41 1 -0.2067 0.8656 6.6370 42 1 1.9748 -1.1040 8.7808 43 1 3.4554 -0.2175 8.3452 44 1 3.2088 -0.2720 11.0278 45 1 4.1086 -0.1935 14.2409 46 1 0.5363 -2.2514 -1.4674 47 1 2.0020 -2.9044 -3.5452 48 1 4.0565 -1.2075 -3.6670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713473324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:16 Heat of formation + Delta-G solvation = -10.291248 kcal Electronic energy + Delta-G solvation = -27783.802255 eV Core-core repulsion = 23681.883532 eV Total energy + Delta-G solvation = -4101.918723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15017 -40.93134 -40.34242 -38.25251 -36.48872 -35.95541 -35.47857 -33.27087 -31.66094 -30.92812 -30.46420 -29.29241 -28.54554 -26.96287 -25.39797 -24.21301 -22.33730 -21.95403 -21.71208 -20.96418 -20.67406 -19.84925 -18.62652 -17.85990 -17.52506 -17.26826 -17.02197 -16.56989 -16.54840 -16.14274 -15.84365 -15.72491 -15.54820 -15.08668 -14.97614 -14.86175 -14.49278 -14.36324 -14.02255 -13.82809 -13.76199 -13.50040 -13.44420 -13.03700 -12.98928 -12.84245 -12.56876 -12.55200 -12.47020 -12.41019 -12.22561 -12.14777 -12.08161 -11.57626 -11.44830 -11.03295 -10.38605 -10.28499 -10.12801 -9.98739 -9.50225 -9.23636 -8.45577 -5.93865 1.00445 1.40062 1.42073 1.43823 1.52621 1.54525 2.00079 2.07320 2.09453 2.31434 2.91863 3.21568 3.42235 3.43774 3.60535 3.77816 3.89946 4.01110 4.06971 4.12866 4.17246 4.25772 4.36658 4.43196 4.47043 4.48649 4.53344 4.63755 4.64850 4.74100 4.78916 4.83851 4.87516 4.96433 4.98308 5.17488 5.20798 5.22170 5.37993 5.42154 5.79040 5.85411 6.05208 6.17194 6.17632 6.47756 6.62517 6.82483 7.14672 7.18424 7.58373 8.14856 8.71468 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038694 B = 0.001435 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.446889 B =19501.924516 C =19792.549807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.083 0.917 4 C -0.139 4.139 5 C 0.519 3.481 6 O -0.575 6.575 7 N -0.712 5.712 8 C 0.130 3.870 9 C 0.052 3.948 10 N -0.541 5.541 11 C 0.025 3.975 12 C 0.061 3.939 13 C 0.439 3.561 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.274 1.274 24 N -0.374 5.374 25 C 0.056 3.944 26 C -0.285 4.285 27 C 0.036 3.964 28 N -0.347 5.347 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.418 0.582 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.203 0.797 47 H 0.168 0.832 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 -13.015 -29.094 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.101 0.899 4 C -0.180 4.180 5 C 0.306 3.694 6 O -0.455 6.455 7 N -0.365 5.365 8 C 0.005 3.995 9 C -0.076 4.076 10 N -0.266 5.266 11 C -0.123 4.123 12 C -0.070 4.070 13 C 0.226 3.774 14 O -0.503 6.503 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.199 1.199 24 N -0.157 5.157 25 C -0.090 4.090 26 C -0.314 4.314 27 C -0.149 4.149 28 N -0.168 5.168 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.220 0.780 47 H 0.185 0.815 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.927 -10.128 -28.447 30.338 hybrid contribution -0.084 -1.334 0.789 1.552 sum -3.011 -11.463 -27.659 30.091 Atomic orbital electron populations 1.22242 0.91218 1.04320 1.04075 1.20855 0.95916 0.95887 0.80053 0.89895 1.21978 1.04549 1.01319 0.90146 1.20639 0.78548 0.85150 0.85081 1.90723 1.41541 1.26149 1.87045 1.45734 1.57639 1.28219 1.04907 1.21095 0.99865 0.95188 0.83315 1.22258 1.02236 0.95239 0.87886 1.61323 1.08429 1.54713 1.02087 1.22466 0.86924 1.00037 1.02898 1.21726 1.01602 0.95188 0.88497 1.20850 0.83377 0.88623 0.84547 1.90477 1.44898 1.30629 1.84252 1.41915 1.47843 1.23272 1.08110 1.19610 1.32731 1.04829 0.89173 0.90449 1.25983 0.95808 0.98620 1.00667 1.69658 1.34832 1.25580 1.25973 0.85024 0.78544 0.77975 0.77011 1.19775 1.19459 1.19903 1.48973 1.19600 1.24605 1.22517 1.23104 1.00449 0.90455 0.95006 1.21881 0.98822 1.06986 1.03707 1.24406 1.00121 0.93399 0.97010 1.77373 1.04763 1.25416 1.09234 0.89468 0.89687 0.91986 0.85111 0.87430 0.74449 0.92799 0.91990 0.91891 0.88544 0.94575 0.92667 0.90709 0.90885 0.86827 0.76954 0.91333 0.78031 0.81462 0.78174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.58 71.98 0.62 -1.38 16 2 C 0.18 2.63 3.05 44.99 0.14 2.77 16 3 H 0.08 1.71 7.96 -2.39 -0.02 1.69 16 4 C -0.14 -1.52 5.50 29.85 0.16 -1.35 16 5 C 0.52 8.85 7.55 87.66 0.66 9.51 16 6 O -0.57 -14.87 13.96 -3.02 -0.04 -14.91 16 7 N -0.71 -9.97 5.56 -463.07 -2.57 -12.54 16 8 C 0.13 2.65 5.60 86.38 0.48 3.13 16 9 C 0.05 1.00 5.07 86.30 0.44 1.43 16 10 N -0.54 -16.26 4.50 -927.07 -4.17 -20.43 16 11 C 0.02 0.75 8.96 127.69 1.14 1.90 16 12 C 0.06 1.96 5.45 85.56 0.47 2.43 16 13 C 0.44 20.45 7.47 87.65 0.66 21.10 16 14 O -0.62 -33.81 13.91 -3.08 -0.04 -33.85 16 15 N -0.57 -28.95 5.29 -306.99 -1.62 -30.57 16 16 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 17 H 0.08 4.67 7.16 -2.92 -0.02 4.65 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -49.02 13.05 21.66 0.28 -48.73 16 20 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 N -0.37 -5.94 3.53 -327.47 -1.15 -7.09 16 25 C 0.06 0.61 10.59 83.54 0.88 1.49 16 26 C -0.28 -3.24 10.80 21.99 0.24 -3.00 16 27 C 0.04 0.53 12.02 85.24 1.02 1.56 16 28 N -0.35 -7.08 12.58 -57.02 -0.72 -7.79 16 29 H 0.09 0.59 7.16 -2.39 -0.02 0.57 16 30 H 0.08 1.43 5.95 -2.39 -0.01 1.42 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.42 2.91 8.47 -92.71 -0.79 2.13 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.40 6.55 -2.39 -0.02 1.39 16 37 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 38 H 0.10 1.57 7.93 -2.39 -0.02 1.55 16 39 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.05 2.19 5.82 -2.39 -0.01 2.18 16 41 H 0.07 2.06 6.47 -2.39 -0.02 2.05 16 42 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 43 H 0.11 3.12 7.93 -2.38 -0.02 3.10 16 44 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.20 0.71 7.26 -2.91 -0.02 0.68 16 47 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 48 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -78.39 397.00 -0.34 -78.73 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.53 Total: 30.93 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 8.20 Total: 21.45 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -9.96 Total: -127.16 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.09 Total: -48.76 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -78.39 -0.34 -78.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713473324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.443 kcal (2) G-P(sol) polarization free energy of solvation -78.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds