Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47654 * 2 1 4 4 C 1.34952 * 126.03662 * 124.96854 * 3 2 1 5 5 C 1.35316 * 107.74600 * 179.75302 * 4 3 2 6 6 C 1.39864 * 107.91828 * 0.40147 * 5 4 3 7 7 C 1.50706 * 125.89999 * 179.86198 * 6 5 4 8 8 C 1.50695 * 109.47238 * 124.71248 * 7 6 5 9 9 O 1.21280 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00100 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47162 * 179.97438 * 11 10 8 13 13 H 1.09008 * 109.46721 * 65.00151 * 12 11 10 14 14 C 1.53002 * 109.47231 * 184.99836 * 12 11 10 15 15 N 1.46896 * 109.47034 * 305.00327 * 12 11 10 16 16 C 1.46898 * 110.99741 * 155.00081 * 15 12 11 17 17 C 1.50707 * 109.47054 * 179.97438 * 16 15 12 18 18 O 1.21288 * 119.99770 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99787 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99780 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99934 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00350 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99763 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00348 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47189 * 90.00193 * 24 22 20 26 26 H 1.48496 * 109.47145 * 210.00169 * 24 22 20 27 27 H 1.48505 * 109.47182 * 330.00266 * 24 22 20 28 28 N 1.30836 * 108.20352 * 359.59749 * 6 5 4 29 29 H 1.09007 * 109.47101 * 59.99562 * 1 2 3 30 30 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46998 * 299.99986 * 1 2 3 32 32 H 1.09002 * 109.46998 * 240.00014 * 2 1 3 33 33 H 1.09007 * 109.47101 * 120.00438 * 2 1 3 34 34 H 1.08002 * 126.12743 * 0.02562 * 4 3 2 35 35 H 1.07995 * 126.03881 * 180.27723 * 5 4 3 36 36 H 1.08997 * 109.47279 * 244.71797 * 7 6 5 37 37 H 1.08998 * 109.46666 * 4.71336 * 7 6 5 38 38 H 0.97005 * 119.99845 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47066 * 300.00101 * 11 10 8 40 40 H 1.08998 * 109.47179 * 60.00369 * 11 10 8 41 41 H 1.08992 * 109.47242 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.47047 * 300.00241 * 14 12 11 43 43 H 1.09002 * 109.46603 * 59.99918 * 14 12 11 44 44 H 1.00895 * 111.00319 * 31.04456 * 15 12 11 45 45 H 1.09004 * 109.47272 * 299.99213 * 16 15 12 46 46 H 1.09001 * 109.47898 * 59.99791 * 16 15 12 47 47 H 0.96994 * 119.99923 * 359.97438 * 19 17 16 48 48 H 0.96991 * 119.99847 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0760 3.2120 0.5431 6 6 2.3128 3.4723 -0.5997 7 6 2.2363 4.7881 -1.3305 8 6 2.5939 4.5795 -2.7795 9 8 2.8820 3.4714 -3.1795 10 7 2.5936 5.6243 -3.6308 11 6 2.9418 5.4216 -5.0393 12 6 2.8641 6.7575 -5.7812 13 1 3.6240 7.4346 -5.3909 14 6 3.1054 6.5264 -7.2743 15 7 1.5339 7.3493 -5.5860 16 6 1.5797 8.8095 -5.7403 17 6 0.2001 9.3799 -5.5340 18 8 -0.7298 8.6425 -5.2837 19 7 -0.0003 10.7094 -5.6278 20 6 -1.2552 11.2284 -5.4397 21 1 -2.0832 10.5718 -5.2168 22 6 -1.4619 12.5990 -5.5359 23 7 -0.4544 13.3979 -5.8076 24 14 -3.1718 13.3061 -5.2803 25 1 -3.3644 13.6288 -3.8436 26 1 -3.3226 14.5419 -6.0897 27 1 -4.1880 12.3096 -5.7043 28 7 1.6810 2.3747 -0.9280 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3183 1.4127 1.7365 35 1 3.7131 3.9172 1.0559 36 1 1.2236 5.1848 -1.2596 37 1 2.9352 5.4940 -0.8818 38 1 2.3636 6.5107 -3.3108 39 1 3.9546 5.0248 -5.1097 40 1 2.2430 4.7159 -5.4884 41 1 3.0505 7.4780 -7.8028 42 1 4.0924 6.0872 -7.4192 43 1 2.3456 5.8492 -7.6646 44 1 1.1521 7.0924 -4.6881 45 1 2.2618 9.2317 -5.0022 46 1 1.9293 9.0583 -6.7423 47 1 0.7434 11.2991 -5.8277 48 1 -0.5987 14.3547 -5.8751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714234795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = 4.302206 kcal Electronic energy + Delta-G solvation = -28144.408065 eV Core-core repulsion = 24043.122161 eV Total energy + Delta-G solvation = -4101.285904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38994 -39.69831 -38.39787 -36.94336 -34.92822 -34.09372 -33.67889 -31.94661 -31.28794 -30.77898 -29.91722 -28.48930 -26.64545 -25.80675 -23.96898 -23.47546 -21.31742 -20.96495 -20.62079 -19.63502 -19.25811 -17.93236 -17.36302 -17.15775 -16.34991 -16.05413 -15.61378 -15.54344 -15.28794 -14.93053 -14.60707 -14.46809 -14.16364 -13.93692 -13.72013 -13.56943 -13.35301 -13.02490 -12.86091 -12.67734 -12.54663 -12.49803 -12.36504 -12.01477 -11.88435 -11.72189 -11.66434 -11.62333 -11.40705 -11.07935 -10.83816 -10.63584 -10.39980 -10.22651 -9.90861 -9.52072 -9.36307 -9.12072 -8.70609 -8.47637 -8.12049 -7.97345 -6.42867 -3.83632 1.76966 2.30501 2.55994 2.64745 3.17157 3.20914 3.26159 3.32307 3.88864 4.05260 4.13385 4.28605 4.51834 4.54002 4.64101 4.68307 4.82799 4.87085 4.96077 5.00219 5.20267 5.22977 5.24740 5.28178 5.32390 5.37900 5.51050 5.57558 5.62816 5.69801 5.76615 5.79085 5.79440 5.88403 5.96558 6.01333 6.20906 6.29019 6.40906 6.47650 6.86068 7.16874 7.39002 7.54369 7.59487 7.62794 8.05113 8.19671 8.59915 9.16853 9.52907 10.04286 10.74782 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.001981 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.956360 B =14129.625936 C =15405.659540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.047 3.953 5 C -0.266 4.266 6 C 0.082 3.918 7 C -0.062 4.062 8 C 0.519 3.481 9 O -0.525 6.525 10 N -0.734 5.734 11 C 0.120 3.880 12 C 0.072 3.928 13 H 0.049 0.951 14 C -0.138 4.138 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 N -0.258 5.258 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.348 0.652 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.659 -19.806 11.870 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.098 4.098 5 C -0.296 4.296 6 C -0.086 4.086 7 C -0.103 4.103 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.388 5.388 11 C -0.003 4.003 12 C -0.038 4.038 13 H 0.066 0.934 14 C -0.197 4.197 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 N -0.079 5.079 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.182 -21.753 10.263 26.119 hybrid contribution 0.616 1.958 1.569 2.584 sum 10.798 -19.795 11.833 25.465 Atomic orbital electron populations 1.22058 0.93739 1.02818 1.03758 1.21662 0.96163 0.77584 1.03571 1.48751 1.35748 1.10194 1.20929 1.22484 0.96028 0.94907 0.96415 1.21321 1.09548 0.96875 1.01836 1.21499 0.97376 0.94132 0.95556 1.20039 1.05305 0.93423 0.91554 1.20333 0.77234 0.84451 0.87603 1.90736 1.47006 1.23774 1.78450 1.46022 1.71461 1.11312 1.09971 1.21566 1.01356 0.97506 0.79910 1.21807 0.90879 0.94176 0.96980 0.93351 1.21736 1.01104 1.02615 0.94195 1.60109 1.21092 1.08840 1.39914 1.21757 0.96671 0.87989 1.01906 1.19806 0.89751 0.83156 0.84822 1.90534 1.43677 1.58715 1.53684 1.41862 1.10933 1.05262 1.61924 1.19701 0.86921 0.91158 1.45073 0.87917 1.25265 0.99403 0.96015 0.97289 1.69611 1.31068 1.04723 1.48887 0.85855 0.81866 0.78332 0.78231 1.20423 1.20935 1.19400 1.77414 1.22937 0.96226 1.11368 0.90873 0.90765 0.92128 0.89808 0.88832 0.81185 0.83590 0.86888 0.86918 0.76601 0.90988 0.90428 0.92009 0.92537 0.91532 0.83078 0.93833 0.89433 0.77471 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.10 37.15 0.38 -0.78 16 2 C 0.13 0.93 7.23 -4.05 -0.03 0.90 16 3 N -0.37 -4.02 3.68 -61.37 -0.23 -4.24 16 4 C 0.05 0.42 11.45 -17.22 -0.20 0.22 16 5 C -0.27 -2.68 10.72 -40.01 -0.43 -3.11 16 6 C 0.08 1.02 6.02 -82.41 -0.50 0.52 16 7 C -0.06 -0.63 6.28 -29.03 -0.18 -0.81 16 8 C 0.52 6.75 7.82 -10.99 -0.09 6.67 16 9 O -0.52 -8.97 15.56 5.56 0.09 -8.88 16 10 N -0.73 -8.31 4.99 -60.30 -0.30 -8.61 16 11 C 0.12 1.42 5.31 -4.04 -0.02 1.40 16 12 C 0.07 0.85 2.81 -67.71 -0.19 0.66 16 13 H 0.05 0.52 7.80 -51.92 -0.40 0.12 16 14 C -0.14 -1.54 9.42 37.16 0.35 -1.19 16 15 N -0.66 -10.28 5.92 -107.98 -0.64 -10.92 16 16 C 0.05 0.83 5.96 -4.97 -0.03 0.80 16 17 C 0.44 10.13 7.82 -10.98 -0.09 10.04 16 18 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 19 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 N -0.26 -3.65 11.76 33.67 0.40 -3.25 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.36 8.07 -51.92 -0.42 -0.06 16 34 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.11 0.79 8.12 -51.93 -0.42 0.36 16 38 H 0.40 3.88 7.38 -40.82 -0.30 3.58 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.35 5.51 6.41 -39.29 -0.25 5.26 16 45 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 47 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -36.79 406.50 -7.56 -44.35 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -7.47 Total: 15.21 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.26 Total: 7.41 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.10 Total: -64.60 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.79 -7.56 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714234795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.653 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds