Wall clock time and date at job start Tue Mar 31 2020 20:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47654 * 2 1 4 4 C 1.34952 * 126.03662 * 124.96854 * 3 2 1 5 5 C 1.35316 * 107.74600 * 179.75302 * 4 3 2 6 6 C 1.39864 * 107.91828 * 0.40147 * 5 4 3 7 7 C 1.50706 * 125.89999 * 179.86198 * 6 5 4 8 8 C 1.50695 * 109.47238 * 124.71248 * 7 6 5 9 9 O 1.21280 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00100 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47162 * 179.97438 * 11 10 8 13 13 H 1.09008 * 109.46721 * 65.00151 * 12 11 10 14 14 C 1.53002 * 109.47231 * 184.99836 * 12 11 10 15 15 N 1.46896 * 109.47034 * 305.00327 * 12 11 10 16 16 C 1.46898 * 110.99741 * 155.00081 * 15 12 11 17 17 C 1.50707 * 109.47054 * 179.97438 * 16 15 12 18 18 O 1.21288 * 119.99770 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99787 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99780 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99934 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00350 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99763 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00348 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47189 * 90.00193 * 24 22 20 26 26 H 1.48496 * 109.47145 * 210.00169 * 24 22 20 27 27 H 1.48505 * 109.47182 * 330.00266 * 24 22 20 28 28 N 1.30836 * 108.20352 * 359.59749 * 6 5 4 29 29 H 1.09007 * 109.47101 * 59.99562 * 1 2 3 30 30 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46998 * 299.99986 * 1 2 3 32 32 H 1.09002 * 109.46998 * 240.00014 * 2 1 3 33 33 H 1.09007 * 109.47101 * 120.00438 * 2 1 3 34 34 H 1.08002 * 126.12743 * 0.02562 * 4 3 2 35 35 H 1.07995 * 126.03881 * 180.27723 * 5 4 3 36 36 H 1.08997 * 109.47279 * 244.71797 * 7 6 5 37 37 H 1.08998 * 109.46666 * 4.71336 * 7 6 5 38 38 H 0.97005 * 119.99845 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.47066 * 300.00101 * 11 10 8 40 40 H 1.08998 * 109.47179 * 60.00369 * 11 10 8 41 41 H 1.08992 * 109.47242 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.47047 * 300.00241 * 14 12 11 43 43 H 1.09002 * 109.46603 * 59.99918 * 14 12 11 44 44 H 1.00895 * 111.00319 * 31.04456 * 15 12 11 45 45 H 1.09004 * 109.47272 * 299.99213 * 16 15 12 46 46 H 1.09001 * 109.47898 * 59.99791 * 16 15 12 47 47 H 0.96994 * 119.99923 * 359.97438 * 19 17 16 48 48 H 0.96991 * 119.99847 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0760 3.2120 0.5431 6 6 2.3128 3.4723 -0.5997 7 6 2.2363 4.7881 -1.3305 8 6 2.5939 4.5795 -2.7795 9 8 2.8820 3.4714 -3.1795 10 7 2.5936 5.6243 -3.6308 11 6 2.9418 5.4216 -5.0393 12 6 2.8641 6.7575 -5.7812 13 1 3.6240 7.4346 -5.3909 14 6 3.1054 6.5264 -7.2743 15 7 1.5339 7.3493 -5.5860 16 6 1.5797 8.8095 -5.7403 17 6 0.2001 9.3799 -5.5340 18 8 -0.7298 8.6425 -5.2837 19 7 -0.0003 10.7094 -5.6278 20 6 -1.2552 11.2284 -5.4397 21 1 -2.0832 10.5718 -5.2168 22 6 -1.4619 12.5990 -5.5359 23 7 -0.4544 13.3979 -5.8076 24 14 -3.1718 13.3061 -5.2803 25 1 -3.3644 13.6288 -3.8436 26 1 -3.3226 14.5419 -6.0897 27 1 -4.1880 12.3096 -5.7043 28 7 1.6810 2.3747 -0.9280 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3183 1.4127 1.7365 35 1 3.7131 3.9172 1.0559 36 1 1.2236 5.1848 -1.2596 37 1 2.9352 5.4940 -0.8818 38 1 2.3636 6.5107 -3.3108 39 1 3.9546 5.0248 -5.1097 40 1 2.2430 4.7159 -5.4884 41 1 3.0505 7.4780 -7.8028 42 1 4.0924 6.0872 -7.4192 43 1 2.3456 5.8492 -7.6646 44 1 1.1521 7.0924 -4.6881 45 1 2.2618 9.2317 -5.0022 46 1 1.9293 9.0583 -6.7423 47 1 0.7434 11.2991 -5.8277 48 1 -0.5987 14.3547 -5.8751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714234795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:44 Heat of formation + Delta-G solvation = -24.716568 kcal Electronic energy + Delta-G solvation = -28145.666414 eV Core-core repulsion = 24043.122161 eV Total energy + Delta-G solvation = -4102.544252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13852 -40.74275 -40.10593 -38.18595 -35.96703 -35.59136 -34.92152 -33.27102 -32.73699 -31.90030 -30.68955 -29.24644 -28.12217 -26.94075 -25.63178 -24.14621 -22.00364 -21.88681 -21.64017 -21.11731 -20.40915 -19.89673 -18.37449 -17.94606 -17.65935 -17.10696 -16.91104 -16.64097 -16.41326 -16.20791 -16.03100 -15.58289 -15.33685 -15.15675 -14.89772 -14.53114 -14.29785 -14.23641 -13.82845 -13.71739 -13.53845 -13.47954 -13.29702 -13.22834 -12.95704 -12.91232 -12.82288 -12.77373 -12.56034 -12.39501 -12.23706 -12.11879 -11.86660 -11.49145 -11.42040 -10.94665 -10.32566 -10.18594 -10.11954 -9.99565 -9.43120 -9.34875 -8.45322 -5.93525 1.03919 1.38747 1.42954 1.55260 1.64878 1.67680 1.78432 2.07188 2.29102 2.32418 2.89296 3.22286 3.48795 3.51049 3.72042 3.85895 3.92263 4.06559 4.11975 4.19484 4.27672 4.30836 4.34383 4.40993 4.48403 4.53381 4.62060 4.64123 4.67787 4.79089 4.83775 4.89197 4.93458 4.95154 5.05777 5.14205 5.22505 5.32568 5.42727 5.47243 5.73571 5.90221 6.11234 6.25726 6.37814 6.46850 6.62075 6.86038 7.14660 7.23070 7.58532 8.14119 8.71859 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.001981 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.956360 B =14129.625936 C =15405.659540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 N -0.381 5.381 4 C 0.054 3.946 5 C -0.283 4.283 6 C 0.061 3.939 7 C -0.059 4.059 8 C 0.516 3.484 9 O -0.571 6.571 10 N -0.724 5.724 11 C 0.125 3.875 12 C 0.080 3.920 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.275 1.275 28 N -0.317 5.317 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.214 0.786 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.344 0.656 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.255 -19.550 13.267 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.164 5.164 4 C -0.092 4.092 5 C -0.312 4.312 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.303 3.697 9 O -0.450 6.450 10 N -0.378 5.378 11 C 0.001 3.999 12 C -0.029 4.029 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.318 5.318 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.200 1.200 28 N -0.140 5.140 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.231 0.769 35 H 0.187 0.813 36 H 0.137 0.863 37 H 0.166 0.834 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.164 0.836 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.803 -21.461 11.649 27.122 hybrid contribution 0.143 1.785 1.139 2.123 sum 11.946 -19.676 12.788 26.332 Atomic orbital electron populations 1.22000 0.94040 1.03840 1.01862 1.21984 0.96013 0.76432 1.05283 1.49066 1.35991 1.10742 1.20639 1.23219 0.94628 0.94800 0.96560 1.21708 1.09918 0.98067 1.01504 1.21949 0.97691 0.94376 0.96551 1.20158 1.06519 0.93669 0.89629 1.20841 0.76223 0.83868 0.88763 1.90710 1.49284 1.25558 1.79398 1.45966 1.70662 1.11530 1.09658 1.21484 1.01204 0.97128 0.80041 1.21840 0.89513 0.94032 0.97544 0.90963 1.21753 1.02042 1.02374 0.93441 1.60099 1.23608 1.08111 1.39959 1.21619 0.92709 0.88662 1.03750 1.20913 0.91852 0.82274 0.82520 1.90507 1.45977 1.59552 1.55030 1.41916 1.10277 1.06155 1.62584 1.19634 0.87662 0.91663 1.47225 0.90467 1.26003 1.02977 0.95790 0.96470 1.69664 1.32468 1.05129 1.48695 0.84957 0.77387 0.77598 0.78580 1.19514 1.19636 1.20040 1.77320 1.25093 0.97778 1.13764 0.94222 0.88251 0.92437 0.90364 0.84761 0.76942 0.81306 0.86292 0.83444 0.75458 0.89981 0.92789 0.92111 0.90097 0.93056 0.83562 0.90661 0.87791 0.76895 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.10 71.98 0.73 -1.50 16 2 C 0.12 1.63 7.23 86.38 0.62 2.25 16 3 N -0.38 -8.02 3.68 -348.06 -1.28 -9.30 16 4 C 0.05 0.85 11.45 83.54 0.96 1.81 16 5 C -0.28 -5.30 10.72 21.99 0.24 -5.07 16 6 C 0.06 1.51 6.02 43.10 0.26 1.77 16 7 C -0.06 -1.17 6.28 29.10 0.18 -0.99 16 8 C 0.52 13.53 7.82 87.66 0.69 14.22 16 9 O -0.57 -20.20 15.56 -3.03 -0.05 -20.25 16 10 N -0.72 -15.95 4.99 -463.07 -2.31 -18.26 16 11 C 0.13 2.88 5.31 86.38 0.46 3.34 16 12 C 0.08 1.74 2.81 44.92 0.13 1.86 16 13 H 0.07 1.29 7.80 -2.38 -0.02 1.28 16 14 C -0.14 -2.82 9.42 71.98 0.68 -2.15 16 15 N -0.68 -20.37 5.92 -495.55 -2.94 -23.30 16 16 C 0.06 2.06 5.96 85.56 0.51 2.57 16 17 C 0.44 20.17 7.82 87.66 0.69 20.85 16 18 O -0.62 -34.18 15.78 -3.05 -0.05 -34.22 16 19 N -0.57 -28.63 5.29 -306.98 -1.62 -30.25 16 20 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 24 Si 0.99 42.67 29.55 68.60 2.03 44.69 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 N -0.32 -9.27 11.76 -47.38 -0.56 -9.83 16 29 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.13 0.64 8.07 -2.38 -0.02 0.62 16 34 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.15 1.78 8.12 -2.39 -0.02 1.76 16 38 H 0.41 7.43 7.38 -92.70 -0.68 6.75 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.26 7.45 -2.39 -0.02 1.25 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.34 10.70 6.41 -89.70 -0.58 10.13 16 45 H 0.08 1.97 8.06 -2.38 -0.02 1.95 16 46 H 0.10 3.03 7.44 -2.39 -0.02 3.01 16 47 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -83.36 406.50 -0.08 -83.44 By element: Atomic # 1 Polarization: 45.86 SS G_CDS: -1.00 Total: 44.87 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.41 Total: 20.95 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -8.42 Total: -139.48 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.10 Total: -54.47 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -83.36 -0.08 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714234795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.721 kcal (2) G-P(sol) polarization free energy of solvation -83.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds