Wall clock time and date at job start Tue Mar 31 2020 20:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46936 * 2 1 4 4 C 1.34944 * 126.03397 * 124.98047 * 3 2 1 5 5 C 1.35322 * 107.74311 * 179.75216 * 4 3 2 6 6 C 1.39872 * 107.92074 * 0.39006 * 5 4 3 7 7 C 1.50698 * 125.89841 * 179.86833 * 6 5 4 8 8 C 1.50706 * 109.47266 * 124.71572 * 7 6 5 9 9 O 1.21288 * 119.99707 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99969 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99673 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47043 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47446 * 295.00641 * 12 11 10 14 14 C 1.52995 * 109.47146 * 174.99892 * 12 11 10 15 15 N 1.46906 * 109.46965 * 55.00259 * 12 11 10 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 N 1.30843 * 108.19983 * 359.60393 * 6 5 4 29 29 H 1.08998 * 109.47794 * 59.99949 * 1 2 3 30 30 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.99592 * 1 2 3 32 32 H 1.08999 * 109.46906 * 240.00408 * 2 1 3 33 33 H 1.08996 * 109.47522 * 120.00508 * 2 1 3 34 34 H 1.07999 * 126.12992 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.03671 * 180.27500 * 5 4 3 36 36 H 1.08994 * 109.47221 * 4.71231 * 7 6 5 37 37 H 1.09001 * 109.46957 * 244.71062 * 7 6 5 38 38 H 0.96995 * 120.00100 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.47353 * 60.00016 * 11 10 8 40 40 H 1.08999 * 109.47248 * 300.00266 * 11 10 8 41 41 H 1.09002 * 109.46959 * 60.00507 * 14 12 11 42 42 H 1.09003 * 109.47335 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47311 * 300.00221 * 14 12 11 44 44 H 1.00902 * 110.99923 * 328.95894 * 15 12 11 45 45 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 46 46 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 47 47 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8941 5 6 3.0757 3.2122 0.5430 6 6 2.3124 3.4725 -0.5999 7 6 2.2359 4.7882 -1.3306 8 6 2.5935 4.5796 -2.7797 9 8 2.8824 3.4716 -3.1795 10 7 2.5921 5.6242 -3.6312 11 6 2.9402 5.4215 -5.0397 12 6 2.8613 6.7571 -5.7820 13 1 1.8297 7.1092 -5.7876 14 6 3.3442 6.5698 -7.2216 15 7 3.7121 7.7447 -5.1046 16 6 3.2465 9.1121 -5.3719 17 6 4.1420 10.0952 -4.6628 18 8 5.0758 9.6959 -3.9997 19 7 3.9052 11.4179 -4.7656 20 6 4.7195 12.3124 -4.1201 21 1 5.5510 11.9568 -3.5297 22 6 4.4757 13.6761 -4.2265 23 7 5.2565 14.5334 -3.6083 24 14 3.0379 14.2910 -5.2484 25 1 1.8296 14.3939 -4.3913 26 1 3.3637 15.6276 -5.8073 27 1 2.7774 13.3401 -6.3588 28 7 1.6807 2.3747 -0.9282 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.3178 1.4129 1.7367 35 1 3.7129 3.9174 1.0557 36 1 2.9347 5.4941 -0.8819 37 1 1.2231 5.1848 -1.2598 38 1 2.3614 6.5104 -3.3114 39 1 2.2420 4.7150 -5.4886 40 1 3.9533 5.0255 -5.1103 41 1 2.7129 5.8370 -7.7242 42 1 3.2884 7.5214 -7.7502 43 1 4.3758 6.2177 -7.2159 44 1 3.7555 7.5648 -4.1127 45 1 3.2758 9.3027 -6.4447 46 1 2.2244 9.2251 -5.0106 47 1 3.1582 11.7373 -5.2956 48 1 5.0861 15.4855 -3.6822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714234796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:47 Heat of formation + Delta-G solvation = 11.456154 kcal Electronic energy + Delta-G solvation = -28154.846914 eV Core-core repulsion = 24053.871228 eV Total energy + Delta-G solvation = -4100.975685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39985 -39.74108 -38.57506 -37.04937 -34.95982 -34.15007 -33.74565 -31.99288 -31.68689 -30.92732 -29.92523 -28.52236 -26.80903 -25.88882 -23.82080 -23.48716 -21.32726 -20.99905 -20.68606 -19.65731 -19.38659 -18.41626 -17.38038 -17.18110 -16.40799 -16.08305 -15.68035 -15.50582 -15.41635 -15.07003 -14.74740 -14.56424 -14.24965 -13.89869 -13.76019 -13.48783 -13.20429 -13.10690 -12.90336 -12.71822 -12.67975 -12.55303 -12.41518 -12.21433 -12.07588 -12.02166 -11.80198 -11.70155 -11.54995 -11.21344 -10.92425 -10.67142 -10.61347 -9.99276 -9.93862 -9.59289 -9.37919 -9.16267 -8.70669 -8.61520 -8.24792 -8.18581 -6.32711 -3.84367 1.75199 2.28396 2.53572 2.63586 3.01150 3.04806 3.13749 3.16613 3.71180 4.00408 4.08809 4.10706 4.48736 4.53742 4.59060 4.62557 4.75873 4.78375 4.83907 4.98470 5.09650 5.17972 5.19704 5.20859 5.22383 5.34088 5.51774 5.52716 5.54792 5.63056 5.67261 5.71385 5.73290 5.82444 5.87035 5.89898 5.93456 6.20140 6.35017 6.47156 6.84881 7.03452 7.34936 7.49252 7.56236 7.60340 8.12570 8.16309 8.57661 8.93172 9.40455 9.80284 10.80298 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.001923 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.311987 B =14556.795441 C =15560.189141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.048 3.952 5 C -0.264 4.264 6 C 0.082 3.918 7 C -0.061 4.061 8 C 0.519 3.481 9 O -0.524 6.524 10 N -0.734 5.734 11 C 0.120 3.880 12 C 0.072 3.928 13 H 0.049 0.951 14 C -0.138 4.138 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.448 3.552 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 N -0.262 5.262 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.349 0.651 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -24.763 4.413 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.098 4.098 5 C -0.293 4.293 6 C -0.085 4.085 7 C -0.103 4.103 8 C 0.304 3.696 9 O -0.399 6.399 10 N -0.388 5.388 11 C -0.003 4.003 12 C -0.038 4.038 13 H 0.067 0.933 14 C -0.197 4.197 15 N -0.299 5.299 16 C -0.086 4.086 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 N -0.084 5.084 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.189 0.811 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.171 0.829 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.979 -26.344 3.324 29.130 hybrid contribution -1.339 1.622 0.515 2.165 sum -13.319 -24.723 3.840 28.343 Atomic orbital electron populations 1.22050 0.93860 1.02758 1.03600 1.21652 0.96043 0.77665 1.03632 1.48718 1.35882 1.10129 1.20976 1.22496 0.95963 0.94893 0.96414 1.21376 1.09290 0.96922 1.01735 1.21492 0.97403 0.94071 0.95533 1.20042 1.05062 0.93573 0.91618 1.20344 0.77247 0.84446 0.87564 1.90741 1.46869 1.23883 1.78391 1.46015 1.71492 1.11301 1.10026 1.21562 1.01994 0.96810 0.79978 1.21811 0.95271 0.91155 0.95593 0.93332 1.21740 1.02125 1.01851 0.93966 1.60106 1.52413 1.00416 1.17004 1.21792 0.96223 0.89118 1.01496 1.19695 0.87960 0.82763 0.86173 1.90575 1.32066 1.78113 1.43772 1.42210 1.28750 1.05615 1.46353 1.19433 1.10649 0.86232 1.27095 0.86259 1.25040 0.97818 0.95661 0.97631 1.69619 1.37622 1.02544 1.42254 0.86671 0.82761 0.79466 0.80479 1.19665 1.20174 1.19489 1.77353 1.23321 0.96229 1.11489 0.91025 0.90797 0.92159 0.89832 0.88789 0.81118 0.83396 0.86505 0.87284 0.76631 0.90931 0.90385 0.92472 0.92072 0.91443 0.82920 0.89309 0.93701 0.79706 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.10 37.16 0.38 -0.63 16 2 C 0.13 0.87 7.23 -4.04 -0.03 0.84 16 3 N -0.37 -3.90 3.68 -61.37 -0.23 -4.13 16 4 C 0.05 0.43 11.45 -17.22 -0.20 0.23 16 5 C -0.26 -2.75 10.72 -40.01 -0.43 -3.18 16 6 C 0.08 1.01 6.02 -82.40 -0.50 0.51 16 7 C -0.06 -0.61 6.28 -29.03 -0.18 -0.79 16 8 C 0.52 6.58 7.82 -10.98 -0.09 6.49 16 9 O -0.52 -8.81 15.56 5.55 0.09 -8.72 16 10 N -0.73 -7.95 4.99 -60.29 -0.30 -8.25 16 11 C 0.12 1.36 5.31 -4.04 -0.02 1.33 16 12 C 0.07 0.79 2.81 -67.71 -0.19 0.60 16 13 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16 14 C -0.14 -1.44 9.41 37.16 0.35 -1.09 16 15 N -0.66 -9.64 5.92 -107.99 -0.64 -10.28 16 16 C 0.05 0.72 5.97 -4.97 -0.03 0.69 16 17 C 0.45 9.82 7.82 -10.98 -0.09 9.74 16 18 O -0.56 -14.74 15.78 5.55 0.09 -14.65 16 19 N -0.59 -13.66 5.09 -10.96 -0.06 -13.71 16 20 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 24 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 28 N -0.26 -3.54 11.76 33.67 0.40 -3.14 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 3.64 7.37 -40.82 -0.30 3.34 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.35 5.18 6.41 -39.29 -0.25 4.93 16 45 H 0.09 1.26 7.43 -51.93 -0.39 0.87 16 46 H 0.05 0.58 8.05 -51.93 -0.42 0.17 16 47 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -37.83 403.37 -7.21 -45.05 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -7.43 Total: 14.99 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.27 Total: 7.13 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.05 Total: -64.16 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.83 -7.21 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714234796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.502 kcal (2) G-P(sol) polarization free energy of solvation -37.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds