Wall clock time and date at job start Tue Mar 31 2020 20:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46936 * 2 1 4 4 C 1.34944 * 126.03397 * 124.98047 * 3 2 1 5 5 C 1.35322 * 107.74311 * 179.75216 * 4 3 2 6 6 C 1.39872 * 107.92074 * 0.39006 * 5 4 3 7 7 C 1.50698 * 125.89841 * 179.86833 * 6 5 4 8 8 C 1.50706 * 109.47266 * 124.71572 * 7 6 5 9 9 O 1.21288 * 119.99707 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99969 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99673 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47043 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47446 * 295.00641 * 12 11 10 14 14 C 1.52995 * 109.47146 * 174.99892 * 12 11 10 15 15 N 1.46906 * 109.46965 * 55.00259 * 12 11 10 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 N 1.30843 * 108.19983 * 359.60393 * 6 5 4 29 29 H 1.08998 * 109.47794 * 59.99949 * 1 2 3 30 30 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.99592 * 1 2 3 32 32 H 1.08999 * 109.46906 * 240.00408 * 2 1 3 33 33 H 1.08996 * 109.47522 * 120.00508 * 2 1 3 34 34 H 1.07999 * 126.12992 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.03671 * 180.27500 * 5 4 3 36 36 H 1.08994 * 109.47221 * 4.71231 * 7 6 5 37 37 H 1.09001 * 109.46957 * 244.71062 * 7 6 5 38 38 H 0.96995 * 120.00100 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.47353 * 60.00016 * 11 10 8 40 40 H 1.08999 * 109.47248 * 300.00266 * 11 10 8 41 41 H 1.09002 * 109.46959 * 60.00507 * 14 12 11 42 42 H 1.09003 * 109.47335 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47311 * 300.00221 * 14 12 11 44 44 H 1.00902 * 110.99923 * 328.95894 * 15 12 11 45 45 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 46 46 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 47 47 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8941 5 6 3.0757 3.2122 0.5430 6 6 2.3124 3.4725 -0.5999 7 6 2.2359 4.7882 -1.3306 8 6 2.5935 4.5796 -2.7797 9 8 2.8824 3.4716 -3.1795 10 7 2.5921 5.6242 -3.6312 11 6 2.9402 5.4215 -5.0397 12 6 2.8613 6.7571 -5.7820 13 1 1.8297 7.1092 -5.7876 14 6 3.3442 6.5698 -7.2216 15 7 3.7121 7.7447 -5.1046 16 6 3.2465 9.1121 -5.3719 17 6 4.1420 10.0952 -4.6628 18 8 5.0758 9.6959 -3.9997 19 7 3.9052 11.4179 -4.7656 20 6 4.7195 12.3124 -4.1201 21 1 5.5510 11.9568 -3.5297 22 6 4.4757 13.6761 -4.2265 23 7 5.2565 14.5334 -3.6083 24 14 3.0379 14.2910 -5.2484 25 1 1.8296 14.3939 -4.3913 26 1 3.3637 15.6276 -5.8073 27 1 2.7774 13.3401 -6.3588 28 7 1.6807 2.3747 -0.9282 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.3178 1.4129 1.7367 35 1 3.7129 3.9174 1.0557 36 1 2.9347 5.4941 -0.8819 37 1 1.2231 5.1848 -1.2598 38 1 2.3614 6.5104 -3.3114 39 1 2.2420 4.7150 -5.4886 40 1 3.9533 5.0255 -5.1103 41 1 2.7129 5.8370 -7.7242 42 1 3.2884 7.5214 -7.7502 43 1 4.3758 6.2177 -7.2159 44 1 3.7555 7.5648 -4.1127 45 1 3.2758 9.3027 -6.4447 46 1 2.2244 9.2251 -5.0106 47 1 3.1582 11.7373 -5.2956 48 1 5.0861 15.4855 -3.6822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714234796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:46 Heat of formation + Delta-G solvation = -19.677001 kcal Electronic energy + Delta-G solvation = -28156.196948 eV Core-core repulsion = 24053.871228 eV Total energy + Delta-G solvation = -4102.325720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14627 -40.75982 -40.22077 -38.20738 -35.99510 -35.59378 -34.93482 -33.72183 -32.76268 -31.93494 -30.69144 -29.24580 -28.24408 -26.92840 -25.43612 -24.14091 -22.01576 -21.89296 -21.62718 -21.27609 -20.48434 -20.21064 -18.35581 -17.95485 -17.66911 -17.09778 -16.95766 -16.72073 -16.47195 -16.27354 -15.91958 -15.55047 -15.25813 -15.00004 -14.91519 -14.55467 -14.41138 -14.27326 -14.15890 -13.88154 -13.63973 -13.47257 -13.32868 -13.25414 -12.96676 -12.93844 -12.85531 -12.75584 -12.54035 -12.38443 -12.23199 -11.96232 -11.85665 -11.48233 -11.45119 -10.95296 -10.40311 -10.22102 -10.18413 -10.11679 -9.44365 -9.34708 -8.38522 -5.99414 1.01711 1.32919 1.37936 1.47110 1.63333 1.67917 1.77063 1.98911 2.25549 2.30084 2.71878 3.18291 3.38220 3.47855 3.72292 3.86126 3.90952 4.07126 4.12283 4.13848 4.21956 4.30976 4.35161 4.37731 4.46073 4.50668 4.59214 4.64274 4.68817 4.79954 4.84852 4.88665 4.94044 4.95766 5.06532 5.13178 5.21937 5.33469 5.48127 5.55588 5.72362 5.92914 6.06051 6.23638 6.37036 6.46929 6.62452 6.83323 6.91269 7.23131 7.43003 7.99753 8.79013 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.001923 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.311987 B =14556.795441 C =15560.189141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.380 5.380 4 C 0.054 3.946 5 C -0.288 4.288 6 C 0.062 3.938 7 C -0.059 4.059 8 C 0.516 3.484 9 O -0.571 6.571 10 N -0.724 5.724 11 C 0.124 3.876 12 C 0.081 3.919 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.590 5.590 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.256 1.256 26 H -0.278 1.278 27 H -0.230 1.230 28 N -0.309 5.309 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.212 0.788 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.409 0.591 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.345 0.655 45 H 0.113 0.887 46 H 0.086 0.914 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.499 -25.417 3.423 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.163 5.163 4 C -0.091 4.091 5 C -0.317 4.317 6 C -0.105 4.105 7 C -0.100 4.100 8 C 0.303 3.697 9 O -0.450 6.450 10 N -0.378 5.378 11 C 0.000 4.000 12 C -0.028 4.028 13 H 0.093 0.907 14 C -0.197 4.197 15 N -0.321 5.321 16 C -0.071 4.071 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.457 4.457 21 H 0.073 0.927 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.180 1.180 26 H -0.204 1.204 27 H -0.154 1.154 28 N -0.132 5.132 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.229 0.771 35 H 0.180 0.820 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.246 0.754 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.165 0.835 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.001 -27.001 2.311 30.975 hybrid contribution -0.289 1.696 0.909 1.946 sum -15.290 -25.304 3.220 29.740 Atomic orbital electron populations 1.21989 0.93669 1.03892 1.01999 1.22001 0.96300 0.76298 1.05229 1.49062 1.35921 1.10795 1.20555 1.23164 0.94696 0.94665 0.96621 1.21719 1.09969 0.98172 1.01858 1.21921 0.97685 0.94528 0.96327 1.20149 1.06771 0.93445 0.89604 1.20828 0.76263 0.83926 0.88673 1.90715 1.49184 1.25748 1.79335 1.45950 1.70556 1.11471 1.09804 1.21495 1.00905 0.97247 0.80328 1.21831 0.95968 0.89724 0.95274 0.90705 1.21762 1.01641 1.02602 0.93668 1.60095 1.54196 1.00701 1.17078 1.21724 0.96092 0.87477 1.01852 1.20995 0.87599 0.83121 0.84676 1.90557 1.34504 1.79030 1.45716 1.42026 1.28892 1.05583 1.46700 1.19002 1.10568 0.87885 1.28225 0.92695 1.26120 1.01501 0.95066 0.98765 1.69807 1.40351 1.03199 1.44218 0.85362 0.77794 0.79031 0.79310 1.18000 1.20361 1.15366 1.77259 1.25081 0.97444 1.13461 0.93833 0.88260 0.92427 0.90326 0.85043 0.77136 0.81993 0.84552 0.85156 0.75395 0.90300 0.92638 0.90282 0.91757 0.93119 0.83451 0.86905 0.89663 0.77450 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.10 71.98 0.73 -1.10 16 2 C 0.12 1.47 7.23 86.38 0.62 2.09 16 3 N -0.38 -7.73 3.68 -348.07 -1.28 -9.01 16 4 C 0.05 0.91 11.45 83.54 0.96 1.86 16 5 C -0.29 -5.84 10.72 21.99 0.24 -5.61 16 6 C 0.06 1.52 6.02 43.10 0.26 1.78 16 7 C -0.06 -1.14 6.28 29.10 0.18 -0.96 16 8 C 0.52 13.11 7.82 87.66 0.69 13.79 16 9 O -0.57 -19.81 15.56 -3.05 -0.05 -19.86 16 10 N -0.72 -14.99 4.99 -463.05 -2.31 -17.30 16 11 C 0.12 2.66 5.31 86.38 0.46 3.12 16 12 C 0.08 1.57 2.81 44.91 0.13 1.69 16 13 H 0.08 1.13 7.80 -2.39 -0.02 1.11 16 14 C -0.14 -2.51 9.41 71.98 0.68 -1.83 16 15 N -0.68 -18.49 5.92 -495.58 -2.94 -21.43 16 16 C 0.06 1.67 5.97 85.56 0.51 2.18 16 17 C 0.45 19.27 7.82 87.66 0.69 19.95 16 18 O -0.61 -33.01 15.78 -3.05 -0.05 -33.06 16 19 N -0.59 -26.74 5.09 -306.99 -1.56 -28.31 16 20 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -0.87 5.50 84.92 0.47 -0.41 16 23 N -0.94 -55.78 13.96 21.66 0.30 -55.48 16 24 Si 0.97 37.77 27.74 68.60 1.90 39.68 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 28 N -0.31 -8.54 11.76 -47.38 -0.56 -9.09 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 0.56 8.07 -2.39 -0.02 0.54 16 34 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.14 2.03 8.12 -2.39 -0.02 2.01 16 37 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 6.76 7.37 -92.71 -0.68 6.08 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.34 9.81 6.41 -89.69 -0.58 9.24 16 45 H 0.11 2.67 7.43 -2.39 -0.02 2.65 16 46 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 47 H 0.39 14.44 5.76 -92.71 -0.53 13.90 16 48 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -90.44 403.37 0.06 -90.38 By element: Atomic # 1 Polarization: 45.70 SS G_CDS: -0.86 Total: 44.84 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 7.45 Total: 18.63 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -8.35 Total: -140.61 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.10 Total: -52.92 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.68 kcal Total: -90.44 0.06 -90.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714234796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.705 kcal (2) G-P(sol) polarization free energy of solvation -90.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds