Wall clock time and date at job start Tue Mar 31 2020 20:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46895 * 109.47451 * 295.00197 * 4 2 1 6 6 C 1.46901 * 111.00119 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47379 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00016 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00300 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00297 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99786 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00196 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47379 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46697 * 119.99930 * 14 12 10 17 17 H 1.48497 * 109.47244 * 239.99736 * 14 12 10 18 18 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 19 19 N 1.46498 * 109.47059 * 64.99625 * 18 2 1 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 2 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 18 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 18 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.39870 * 125.89247 * 124.71556 * 23 22 20 25 25 C 1.35322 * 107.91462 * 179.86455 * 24 23 22 26 26 N 1.34950 * 107.74596 * 0.39380 * 25 24 23 27 27 C 1.46495 * 126.03830 * 179.74893 * 26 25 24 28 28 N 1.30827 * 125.90077 * 305.02442 * 23 22 20 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 34 34 H 1.00904 * 110.99923 * 303.95195 * 5 4 2 35 35 H 1.09002 * 109.47120 * 300.00343 * 6 5 4 36 36 H 1.09002 * 109.47076 * 59.99489 * 6 5 4 37 37 H 0.97000 * 119.99542 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00120 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.47066 * 304.99893 * 18 2 1 40 40 H 1.08994 * 109.46974 * 185.00040 * 18 2 1 41 41 H 0.97001 * 120.00384 * 0.02562 * 19 18 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 43 43 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 44 44 H 1.07992 * 126.04634 * 359.97438 * 24 23 22 45 45 H 1.07999 * 126.12624 * 180.14657 * 25 24 23 46 46 H 1.09004 * 109.47406 * 269.97612 * 27 26 25 47 47 H 1.09000 * 109.47255 * 29.97812 * 27 26 25 48 48 H 1.09001 * 109.47392 * 149.97301 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6514 0.0376 2.4457 6 6 2.1248 -0.6268 3.6673 7 6 1.7078 0.1783 4.8709 8 8 1.0785 1.2050 4.7254 9 7 2.0348 -0.2418 6.1091 10 6 1.6550 0.4905 7.2041 11 1 1.0940 1.4042 7.0746 12 6 1.9917 0.0571 8.4806 13 7 2.6739 -1.0550 8.6382 14 14 1.4748 1.0552 9.9725 15 1 0.7218 2.2555 9.5284 16 1 0.6095 0.2244 10.8481 17 1 2.6816 1.4785 10.7272 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0353 -2.4423 20 6 2.0008 -0.4106 -3.6656 21 8 2.6308 -1.4407 -3.7789 22 6 1.6075 0.3708 -4.8927 23 6 2.1140 -0.3371 -6.1228 24 6 1.3383 -0.7411 -7.2144 25 6 2.1590 -1.3361 -8.1108 26 7 3.4081 -1.3174 -7.6005 27 6 4.6085 -1.8622 -8.2397 28 7 3.3543 -0.6850 -6.3517 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.9882 0.9875 2.3966 35 1 1.6904 -1.6246 3.7298 36 1 3.2117 -0.7048 3.6406 37 1 2.5384 -1.0626 6.2254 38 1 2.9094 -1.3574 9.5293 39 1 1.6054 -1.7199 -1.2950 40 1 3.1263 -0.7995 -1.2055 41 1 1.1488 0.8593 -2.3518 42 1 0.5214 0.4497 -4.9405 43 1 2.0423 1.3691 -4.8425 44 1 0.2730 -0.6011 -7.3234 45 1 1.8660 -1.7549 -9.0622 46 1 4.7355 -2.9042 -7.9459 47 1 4.5033 -1.8003 -9.3228 48 1 5.4799 -1.2875 -7.9259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714391522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:08 Heat of formation + Delta-G solvation = -0.393165 kcal Electronic energy + Delta-G solvation = -27268.642786 eV Core-core repulsion = 23167.153276 eV Total energy + Delta-G solvation = -4101.489510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51270 -39.76887 -38.35139 -37.16493 -34.85266 -34.17105 -33.84156 -32.37561 -31.18944 -30.80365 -29.99203 -27.38857 -26.93324 -25.82774 -24.67835 -23.06348 -21.51347 -21.09290 -20.66511 -19.75891 -19.13955 -17.87108 -17.34163 -17.21552 -16.34883 -15.95863 -15.81009 -15.69756 -15.45058 -14.76032 -14.56869 -14.48868 -14.33983 -14.06055 -13.83304 -13.57101 -13.41723 -13.33696 -13.11102 -12.87882 -12.73427 -12.58533 -12.37472 -12.23890 -11.87129 -11.65475 -11.50412 -11.13267 -11.02067 -10.97325 -10.86476 -10.83646 -10.33439 -10.21379 -10.04321 -9.52952 -9.50759 -9.22441 -8.86688 -8.44457 -8.03403 -7.94289 -6.40547 -3.81350 1.60278 2.19236 2.39040 2.50712 3.07444 3.17274 3.27765 3.35059 3.92592 4.06938 4.11051 4.33189 4.39667 4.48557 4.66356 4.74825 4.75446 4.83451 4.90522 4.99538 5.00853 5.05079 5.19550 5.27593 5.32458 5.38563 5.46496 5.52116 5.64006 5.69883 5.71264 5.79428 5.90527 5.93010 6.00865 6.13733 6.28495 6.29319 6.30163 6.42998 6.68885 7.22335 7.30065 7.44892 7.56542 7.67576 8.07277 8.07934 8.62639 9.19237 9.55920 10.07261 10.77312 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042153 B = 0.001329 C = 0.001304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.091311 B =21057.356056 C =21466.438800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.126 3.874 19 N -0.729 5.729 20 C 0.513 3.487 21 O -0.525 6.525 22 C -0.059 4.059 23 C 0.081 3.919 24 C -0.266 4.266 25 C 0.049 3.951 26 N -0.377 5.377 27 C 0.102 3.898 28 N -0.263 5.263 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.173 0.827 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -0.982 -34.024 34.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.002 3.998 19 N -0.382 5.382 20 C 0.298 3.702 21 O -0.399 6.399 22 C -0.101 4.101 23 C -0.086 4.086 24 C -0.296 4.296 25 C -0.096 4.096 26 N -0.159 5.159 27 C -0.039 4.039 28 N -0.086 5.086 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.165 0.835 45 H 0.190 0.810 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.835 -1.501 -33.627 33.670 hybrid contribution 0.037 0.300 0.521 0.602 sum 0.872 -1.201 -33.106 33.139 Atomic orbital electron populations 1.21755 0.93726 1.02150 1.02076 1.21340 0.97614 0.99945 0.92954 0.90515 1.21898 0.97344 0.97971 0.89248 1.60037 1.64156 1.05826 0.99782 1.21666 0.97757 0.98659 0.90123 1.19817 0.85498 0.87919 0.84093 1.90517 1.44116 1.26397 1.85755 1.41874 1.49484 1.24286 1.04454 1.19757 1.32748 1.06727 0.83618 0.87866 1.25260 0.96944 0.96648 0.99107 1.69622 1.38981 1.21773 1.23948 0.85803 0.78260 0.79583 0.80711 1.19207 1.20754 1.20794 1.21364 0.99960 0.95399 0.83103 1.45970 1.58366 1.28151 1.05740 1.20372 0.79593 0.85973 0.84263 1.90756 1.38641 1.24121 1.86431 1.20022 1.02937 0.99112 0.88009 1.21508 0.91386 0.99830 0.95874 1.21347 1.00839 1.11441 0.95962 1.22504 0.84999 1.01787 1.00355 1.48544 1.07274 1.45638 1.14487 1.21848 0.85431 0.99604 0.97064 1.77427 1.20173 1.14657 0.96308 0.93629 0.92832 0.90469 0.90768 0.95307 0.83251 0.89599 0.93887 0.77460 0.91939 0.91327 0.91604 0.76446 0.86859 0.87228 0.83454 0.80991 0.90705 0.89519 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.95 37.16 0.33 -1.06 16 2 C -0.10 -0.97 2.57 -90.62 -0.23 -1.20 16 3 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 4 C 0.07 0.78 5.07 -3.83 -0.02 0.76 16 5 N -0.67 -10.38 5.58 -115.06 -0.64 -11.02 16 6 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 7 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 8 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 9 N -0.56 -14.38 5.29 -10.97 -0.06 -14.43 16 10 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 11 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.13 1.24 5.06 -4.04 -0.02 1.22 16 19 N -0.73 -6.16 5.28 -60.30 -0.32 -6.48 16 20 C 0.51 5.46 7.82 -10.98 -0.09 5.37 16 21 O -0.52 -8.11 15.56 5.55 0.09 -8.03 16 22 C -0.06 -0.44 6.28 -29.03 -0.18 -0.62 16 23 C 0.08 0.84 6.02 -82.41 -0.50 0.35 16 24 C -0.27 -2.22 10.72 -40.01 -0.43 -2.64 16 25 C 0.05 0.36 11.49 -17.22 -0.20 0.16 16 26 N -0.38 -3.47 4.01 -68.16 -0.27 -3.75 16 27 C 0.10 0.51 11.47 59.84 0.69 1.19 16 28 N -0.26 -3.28 11.92 33.67 0.40 -2.88 16 29 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.40 2.29 7.66 -40.82 -0.31 1.98 16 42 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -37.85 408.29 -7.46 -45.30 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.59 Total: 12.00 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.00 Total: 6.69 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.17 Total: -62.51 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.85 -7.46 -45.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714391522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.910 kcal (2) G-P(sol) polarization free energy of solvation -37.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds