Wall clock time and date at job start Tue Mar 31 2020 20:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 5 5 N 1.46895 * 109.47451 * 295.00197 * 4 2 1 6 6 C 1.46901 * 111.00119 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47379 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00016 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00300 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00297 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99786 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00196 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47379 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46697 * 119.99930 * 14 12 10 17 17 H 1.48497 * 109.47244 * 239.99736 * 14 12 10 18 18 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 19 19 N 1.46498 * 109.47059 * 64.99625 * 18 2 1 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 2 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 18 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 18 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.39870 * 125.89247 * 124.71556 * 23 22 20 25 25 C 1.35322 * 107.91462 * 179.86455 * 24 23 22 26 26 N 1.34950 * 107.74596 * 0.39380 * 25 24 23 27 27 C 1.46495 * 126.03830 * 179.74893 * 26 25 24 28 28 N 1.30827 * 125.90077 * 305.02442 * 23 22 20 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.08998 * 109.46886 * 55.00501 * 4 2 1 33 33 H 1.09002 * 109.46923 * 174.99751 * 4 2 1 34 34 H 1.00904 * 110.99923 * 303.95195 * 5 4 2 35 35 H 1.09002 * 109.47120 * 300.00343 * 6 5 4 36 36 H 1.09002 * 109.47076 * 59.99489 * 6 5 4 37 37 H 0.97000 * 119.99542 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00120 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.47066 * 304.99893 * 18 2 1 40 40 H 1.08994 * 109.46974 * 185.00040 * 18 2 1 41 41 H 0.97001 * 120.00384 * 0.02562 * 19 18 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 43 43 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 44 44 H 1.07992 * 126.04634 * 359.97438 * 24 23 22 45 45 H 1.07999 * 126.12624 * 180.14657 * 25 24 23 46 46 H 1.09004 * 109.47406 * 269.97612 * 27 26 25 47 47 H 1.09000 * 109.47255 * 29.97812 * 27 26 25 48 48 H 1.09001 * 109.47392 * 149.97301 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6514 0.0376 2.4457 6 6 2.1248 -0.6268 3.6673 7 6 1.7078 0.1783 4.8709 8 8 1.0785 1.2050 4.7254 9 7 2.0348 -0.2418 6.1091 10 6 1.6550 0.4905 7.2041 11 1 1.0940 1.4042 7.0746 12 6 1.9917 0.0571 8.4806 13 7 2.6739 -1.0550 8.6382 14 14 1.4748 1.0552 9.9725 15 1 0.7218 2.2555 9.5284 16 1 0.6095 0.2244 10.8481 17 1 2.6816 1.4785 10.7272 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0353 -2.4423 20 6 2.0008 -0.4106 -3.6656 21 8 2.6308 -1.4407 -3.7789 22 6 1.6075 0.3708 -4.8927 23 6 2.1140 -0.3371 -6.1228 24 6 1.3383 -0.7411 -7.2144 25 6 2.1590 -1.3361 -8.1108 26 7 3.4081 -1.3174 -7.6005 27 6 4.6085 -1.8622 -8.2397 28 7 3.3543 -0.6850 -6.3517 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2057 34 1 1.9882 0.9875 2.3966 35 1 1.6904 -1.6246 3.7298 36 1 3.2117 -0.7048 3.6406 37 1 2.5384 -1.0626 6.2254 38 1 2.9094 -1.3574 9.5293 39 1 1.6054 -1.7199 -1.2950 40 1 3.1263 -0.7995 -1.2055 41 1 1.1488 0.8593 -2.3518 42 1 0.5214 0.4497 -4.9405 43 1 2.0423 1.3691 -4.8425 44 1 0.2730 -0.6011 -7.3234 45 1 1.8660 -1.7549 -9.0622 46 1 4.7355 -2.9042 -7.9459 47 1 4.5033 -1.8003 -9.3228 48 1 5.4799 -1.2875 -7.9259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714391522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:07 Heat of formation + Delta-G solvation = -30.631451 kcal Electronic energy + Delta-G solvation = -27269.954017 eV Core-core repulsion = 23167.153276 eV Total energy + Delta-G solvation = -4102.800741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10299 -40.59925 -40.14283 -38.24841 -36.17266 -35.62063 -34.75839 -33.46031 -33.14668 -31.36954 -30.63180 -28.80729 -27.67896 -26.76659 -26.11226 -24.32781 -22.08768 -21.84037 -21.59069 -21.00583 -20.37812 -19.87570 -18.04017 -17.89709 -17.73006 -16.97735 -16.92526 -16.62772 -16.44097 -16.23935 -15.95270 -15.58873 -15.24387 -15.19683 -14.93371 -14.61618 -14.45443 -14.25963 -13.91366 -13.82175 -13.52396 -13.41594 -13.37559 -13.17472 -13.11741 -13.00654 -12.86452 -12.77396 -12.40011 -12.10908 -11.98337 -11.91899 -11.69019 -11.50629 -11.50092 -10.90729 -10.33624 -10.18207 -10.03765 -10.00964 -9.43693 -9.29530 -8.46334 -5.95146 1.02381 1.37203 1.42464 1.56818 1.70449 1.73213 1.79118 2.05826 2.28387 2.36709 2.97085 3.21179 3.54192 3.55916 3.89079 3.89725 3.94859 4.06448 4.10472 4.23143 4.33534 4.40585 4.43733 4.48636 4.52202 4.57058 4.58703 4.65122 4.67200 4.78739 4.85481 4.86772 4.93252 4.99201 5.12676 5.16859 5.30978 5.41662 5.49441 5.57878 5.73232 5.89142 6.10533 6.22993 6.42863 6.60449 6.62263 6.84068 7.13083 7.33708 7.56824 8.11807 8.71362 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042153 B = 0.001329 C = 0.001304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.091311 B =21057.356056 C =21466.438800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.085 0.915 4 C 0.066 3.934 5 N -0.675 5.675 6 C 0.064 3.936 7 C 0.438 3.562 8 O -0.621 6.621 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.134 3.866 19 N -0.715 5.715 20 C 0.511 3.489 21 O -0.579 6.579 22 C -0.054 4.054 23 C 0.063 3.937 24 C -0.284 4.284 25 C 0.052 3.948 26 N -0.388 5.388 27 C 0.094 3.906 28 N -0.324 5.324 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.417 0.583 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.171 0.829 45 H 0.212 0.788 46 H 0.075 0.925 47 H 0.122 0.878 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -0.800 -35.471 35.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.064 4.064 5 N -0.307 5.307 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C 0.009 3.991 19 N -0.369 5.369 20 C 0.297 3.703 21 O -0.458 6.458 22 C -0.096 4.096 23 C -0.103 4.103 24 C -0.313 4.313 25 C -0.094 4.094 26 N -0.171 5.171 27 C -0.046 4.046 28 N -0.147 5.147 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.166 0.834 43 H 0.148 0.852 44 H 0.188 0.812 45 H 0.229 0.771 46 H 0.094 0.906 47 H 0.140 0.860 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.162 -1.311 -35.079 35.104 hybrid contribution 0.250 0.215 0.880 0.939 sum 0.413 -1.096 -34.199 34.219 Atomic orbital electron populations 1.21704 0.93619 1.01881 1.02081 1.21196 0.97463 1.00023 0.91822 0.89687 1.21973 0.98030 0.97852 0.88506 1.60034 1.64602 1.05926 1.00187 1.21525 0.99023 0.98068 0.88201 1.20866 0.83862 0.87622 0.85055 1.90485 1.45521 1.28275 1.86500 1.41947 1.50021 1.24392 1.04782 1.19722 1.34308 1.06991 0.85300 0.90232 1.26044 0.96440 0.97562 1.01225 1.69682 1.39055 1.22531 1.24974 0.84864 0.78217 0.78006 0.77210 1.19672 1.19665 1.19627 1.21167 0.99175 0.95180 0.83569 1.45845 1.57787 1.28383 1.04861 1.20961 0.78504 0.85399 0.85396 1.90733 1.41205 1.26673 1.87208 1.20170 1.05059 0.98960 0.85365 1.22051 0.91319 0.99809 0.97159 1.21758 1.02113 1.11785 0.95691 1.23213 0.84187 1.00534 1.01423 1.48887 1.08869 1.45445 1.13902 1.22119 0.84291 0.99283 0.98910 1.77326 1.21869 1.16960 0.98525 0.91223 0.93242 0.92826 0.90499 0.94407 0.83649 0.87996 0.91766 0.77027 0.91334 0.92278 0.92732 0.74548 0.83370 0.85233 0.81182 0.77105 0.90595 0.85986 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.95 71.98 0.64 -1.86 16 2 C -0.09 -1.55 2.57 -10.79 -0.03 -1.58 16 3 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 4 C 0.07 1.48 5.07 86.31 0.44 1.91 16 5 N -0.68 -20.46 5.58 -517.94 -2.89 -23.35 16 6 C 0.06 2.20 6.17 85.56 0.53 2.73 16 7 C 0.44 20.89 7.82 87.66 0.69 21.58 16 8 O -0.62 -34.28 15.78 -3.07 -0.05 -34.33 16 9 N -0.57 -29.67 5.29 -306.99 -1.62 -31.30 16 10 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 13 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16 14 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 C 0.13 2.50 5.06 86.38 0.44 2.94 16 19 N -0.72 -11.00 5.28 -463.07 -2.45 -13.45 16 20 C 0.51 10.49 7.82 87.66 0.69 11.17 16 21 O -0.58 -18.29 15.56 -3.04 -0.05 -18.34 16 22 C -0.05 -0.72 6.28 29.10 0.18 -0.54 16 23 C 0.06 1.27 6.02 43.10 0.26 1.53 16 24 C -0.28 -4.28 10.72 21.99 0.24 -4.05 16 25 C 0.05 0.68 11.49 83.54 0.96 1.64 16 26 N -0.39 -6.94 4.01 -369.57 -1.48 -8.43 16 27 C 0.09 0.87 11.47 127.77 1.47 2.34 16 28 N -0.32 -8.17 11.92 -47.39 -0.56 -8.73 16 29 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.34 10.86 8.43 -89.69 -0.76 10.11 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.40 19.49 7.90 -92.71 -0.73 18.75 16 38 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.42 3.70 7.66 -92.71 -0.71 2.99 16 42 H 0.15 0.83 8.12 -2.39 -0.02 0.81 16 43 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 46 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -85.10 408.29 -0.22 -85.32 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -1.20 Total: 37.95 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.77 Total: 19.32 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -8.72 Total: -135.05 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.10 Total: -52.67 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -85.10 -0.22 -85.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714391522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.689 kcal (2) G-P(sol) polarization free energy of solvation -85.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds