Wall clock time and date at job start Tue Mar 31 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47301 * 2 1 4 4 C 1.53001 * 109.47394 * 119.99880 * 2 1 3 5 5 N 1.46492 * 109.47193 * 295.00650 * 4 2 1 6 6 C 1.36942 * 120.00251 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00281 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47386 * 89.99955 * 10 8 6 12 12 H 1.48501 * 109.46871 * 209.99913 * 10 8 6 13 13 H 1.48500 * 109.47037 * 329.99576 * 10 8 6 14 14 C 1.53005 * 109.47688 * 240.00087 * 2 1 3 15 15 N 1.46505 * 109.46904 * 64.99823 * 14 2 1 16 16 C 1.34773 * 120.00095 * 180.02562 * 15 14 2 17 17 O 1.21603 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.47521 * 120.00175 * 179.72702 * 16 15 14 19 19 C 1.36596 * 125.77041 * 179.97438 * 18 16 15 20 20 N 1.34816 * 106.83598 * 179.83903 * 19 18 16 21 21 C 1.46502 * 126.59239 * 180.15057 * 20 19 18 22 22 C 1.53001 * 109.47403 * 125.28214 * 21 20 19 23 23 H 1.08998 * 110.45169 * 52.39443 * 22 21 20 24 24 C 1.54509 * 110.51403 * 174.99717 * 22 21 20 25 25 C 1.54481 * 104.05906 * 118.64571 * 24 22 21 26 26 O 1.44418 * 104.80405 * 23.98131 * 25 24 22 27 27 C 1.44419 * 105.27590 * 319.48606 * 26 25 24 28 28 N 1.40210 * 106.81165 * 0.40834 * 20 19 18 29 29 N 1.28754 * 108.36727 * 359.73758 * 28 20 19 30 30 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47633 * 299.99867 * 1 2 3 32 32 H 1.09002 * 109.46985 * 60.00357 * 1 2 3 33 33 H 1.09008 * 109.46624 * 55.00437 * 4 2 1 34 34 H 1.08999 * 109.47460 * 174.99853 * 4 2 1 35 35 H 0.97003 * 120.00109 * 359.97438 * 5 4 2 36 36 H 0.97006 * 119.99920 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.46946 * 305.00582 * 14 2 1 38 38 H 1.08993 * 109.47679 * 185.00125 * 14 2 1 39 39 H 0.97000 * 119.99792 * 0.02562 * 15 14 2 40 40 H 1.08003 * 126.57937 * 359.97438 * 19 18 16 41 41 H 1.09001 * 109.46894 * 245.28796 * 21 20 19 42 42 H 1.09006 * 109.47251 * 5.28250 * 21 20 19 43 43 H 1.08998 * 110.51443 * 237.29621 * 24 22 21 44 44 H 1.09011 * 110.50714 * 0.02562 * 24 22 21 45 45 H 1.08999 * 110.36596 * 142.81406 * 25 24 22 46 46 H 1.08997 * 110.37241 * 265.14737 * 25 24 22 47 47 H 1.09004 * 110.37129 * 281.68055 * 27 26 25 48 48 H 1.09000 * 110.37280 * 159.34399 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3376 3.7864 8 6 1.6350 0.2968 4.8160 9 7 0.9517 1.4149 4.6930 10 14 2.1113 -0.3251 6.5119 11 1 3.4340 0.2337 6.8906 12 1 1.0907 0.1048 7.5013 13 1 2.1876 -1.8080 6.4919 14 6 2.0401 -0.7212 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9957 -0.4134 -3.6660 17 8 2.6275 -1.4463 -3.7796 18 6 1.6003 0.3453 -4.8677 19 6 1.8841 0.0008 -6.1587 20 7 1.3426 0.9529 -6.9449 21 6 1.3876 1.0067 -8.4082 22 6 -0.0355 1.1210 -8.9584 23 1 -0.5624 1.9483 -8.4830 24 6 -0.0099 1.3054 -10.4922 25 6 -0.7654 0.0705 -11.0313 26 8 -1.6125 -0.3495 -9.9397 27 6 -0.8035 -0.2034 -8.7523 28 7 0.7335 1.8846 -6.0925 29 7 0.9046 1.4952 -4.8772 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2056 35 1 1.1487 0.8593 2.3517 36 1 0.6956 1.9162 5.4830 37 1 1.6054 -1.7198 -1.2952 38 1 3.1263 -0.7995 -1.2056 39 1 1.1489 0.8595 -2.3517 40 1 2.4345 -0.8686 -6.4868 41 1 1.9692 1.8734 -8.7222 42 1 1.8533 0.0986 -8.7912 43 1 -0.5261 2.2227 -10.7753 44 1 1.0167 1.3147 -10.8586 45 1 -1.3691 0.3432 -11.8969 46 1 -0.0623 -0.7205 -11.2920 47 1 -0.1062 -1.0365 -8.6635 48 1 -1.4365 -0.1412 -7.8671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714442411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:24 Heat of formation + Delta-G solvation = 17.725833 kcal Electronic energy + Delta-G solvation = -28012.886229 eV Core-core repulsion = 23912.182418 eV Total energy + Delta-G solvation = -4100.703812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58819 -40.15659 -39.43862 -36.77986 -35.83846 -34.34612 -32.92395 -32.43007 -31.23639 -30.14915 -29.82743 -27.29152 -26.46257 -25.41278 -23.84775 -23.52461 -22.57461 -22.20381 -21.33754 -20.43779 -19.84792 -18.47878 -17.34631 -16.93695 -16.79232 -16.26943 -16.16541 -16.10582 -15.85402 -15.33205 -14.96328 -14.67917 -14.60592 -14.13419 -13.97730 -13.71473 -13.54475 -13.38806 -12.99370 -12.64339 -12.55143 -12.47645 -12.26094 -12.12905 -11.99422 -11.90045 -11.64837 -11.35169 -11.01593 -10.87449 -10.74984 -10.67489 -10.52726 -10.46744 -10.39578 -10.20592 -9.95178 -9.64364 -9.63876 -8.99355 -8.83727 -6.87923 -5.73032 -3.01310 0.76274 1.46585 1.54575 3.08559 3.17219 3.22547 3.46779 3.51855 3.53566 3.58639 3.73111 3.93845 4.01198 4.14575 4.30286 4.41899 4.51308 4.54555 4.59611 4.62756 4.66808 4.89643 4.99041 5.07678 5.09909 5.11737 5.23314 5.27438 5.34368 5.46083 5.47664 5.61741 5.87360 5.90714 6.02234 6.02785 6.09488 6.16348 6.31560 6.44724 6.50013 6.71589 6.83080 6.92172 7.39009 7.67425 7.74139 8.11920 8.46053 9.57295 10.15252 10.49979 11.49932 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.001559 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.253118 B =17961.378322 C =18135.317041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.707 5.707 16 C 0.601 3.399 17 O -0.543 6.543 18 C -0.097 4.097 19 C 0.092 3.908 20 N -0.364 5.364 21 C 0.131 3.869 22 C -0.138 4.138 23 H 0.105 0.895 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.370 6.370 27 C 0.049 3.951 28 N -0.061 5.061 29 N -0.201 5.201 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.409 0.591 40 H 0.205 0.795 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 -0.747 -36.726 36.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.357 5.357 16 C 0.384 3.616 17 O -0.420 6.420 18 C -0.236 4.236 19 C -0.065 4.065 20 N -0.149 5.149 21 C 0.010 3.990 22 C -0.158 4.158 23 H 0.123 0.877 24 C -0.185 4.185 25 C -0.035 4.035 26 O -0.289 6.289 27 C -0.028 4.028 28 N -0.041 5.041 29 N -0.075 5.075 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.221 0.779 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.759 -0.375 -36.613 36.623 hybrid contribution 0.691 -0.379 0.790 1.116 sum -0.068 -0.754 -35.823 35.831 Atomic orbital electron populations 1.21799 0.94587 1.01926 1.01678 1.21560 0.96834 1.00600 0.94029 0.90400 1.20573 0.96582 0.94200 0.85371 1.42339 1.66909 1.27709 1.00563 1.19245 1.28620 1.05442 0.83692 0.91153 1.24730 1.01042 0.97429 0.97818 1.69658 1.43561 1.16593 1.28446 0.86185 0.77557 0.77998 0.84430 1.21765 1.21811 1.20774 1.21491 1.00295 0.95265 0.82620 1.45872 1.56570 1.27983 1.05318 1.16736 0.79274 0.83754 0.81798 1.90815 1.40928 1.23771 1.86437 1.21547 1.09627 0.97784 0.94645 1.23388 0.97420 0.95184 0.90469 1.50517 1.38066 1.17637 1.08670 1.22166 0.98463 1.05530 0.72871 1.22929 0.94904 1.00969 0.96989 0.87662 1.22964 1.02212 1.00315 0.93010 1.23471 0.93869 0.94933 0.91233 1.89194 1.36487 1.87435 1.15741 1.23508 0.94561 0.94944 0.89757 1.82001 1.17686 1.11558 0.92901 1.74678 1.10406 1.09110 1.13298 0.92839 0.91122 0.93706 0.95976 0.96121 0.78170 0.93558 0.91030 0.91041 0.75523 0.77859 0.87724 0.87378 0.89562 0.89766 0.88647 0.91941 0.92008 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.94 37.15 0.33 -1.88 16 2 C -0.11 -1.77 2.46 -90.62 -0.22 -1.99 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.16 3.23 5.65 -4.05 -0.02 3.21 16 5 N -0.73 -18.54 5.33 -59.91 -0.32 -18.86 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 15 N -0.71 -9.17 5.28 -61.35 -0.32 -9.50 16 16 C 0.60 8.00 7.82 -12.48 -0.10 7.91 16 17 O -0.54 -8.47 16.86 5.27 0.09 -8.38 16 18 C -0.10 -1.08 6.99 -83.55 -0.58 -1.67 16 19 C 0.09 0.71 11.27 -16.83 -0.19 0.52 16 20 N -0.36 -2.50 3.58 -61.06 -0.22 -2.72 16 21 C 0.13 0.37 5.69 -4.04 -0.02 0.35 16 22 C -0.14 -0.53 3.24 -89.05 -0.29 -0.82 16 23 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 24 C -0.15 -0.32 6.74 -25.16 -0.17 -0.49 16 25 C 0.04 0.15 7.63 37.93 0.29 0.44 16 26 O -0.37 -2.74 11.65 -35.23 -0.41 -3.15 16 27 C 0.05 0.28 7.08 37.93 0.27 0.55 16 28 N -0.06 -0.64 13.58 60.35 0.82 0.18 16 29 N -0.20 -2.41 12.04 32.85 0.40 -2.01 16 30 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 32 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 33 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.41 4.96 7.34 -40.82 -0.30 4.66 16 40 H 0.20 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.11 0.03 7.90 -51.93 -0.41 -0.38 16 43 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.01 7.73 -51.92 -0.40 -0.39 16 45 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.06 0.28 7.74 -51.93 -0.40 -0.12 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -35.47 400.07 -6.79 -42.26 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.58 Total: 5.75 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.98 Total: 0.47 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 1.08 Total: -60.60 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.32 Total: -11.53 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.47 -6.79 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.991 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds