Wall clock time and date at job start Tue Mar 31 2020 20:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53001 * 109.46763 * 120.00310 * 2 1 3 5 5 N 1.46500 * 109.47346 * 294.99710 * 4 2 1 6 6 C 1.36932 * 120.00017 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99840 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99902 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47694 * 119.99805 * 10 8 6 13 13 H 1.48500 * 109.47327 * 240.00067 * 10 8 6 14 14 C 1.53004 * 109.46965 * 239.99938 * 2 1 3 15 15 N 1.46500 * 109.46960 * 65.00298 * 14 2 1 16 16 C 1.34780 * 120.00066 * 179.97438 * 15 14 2 17 17 O 1.21594 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.76875 * 180.23849 * 18 16 15 20 20 N 1.34812 * 106.84032 * 180.13891 * 19 18 16 21 21 C 1.46502 * 126.59471 * 179.90509 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.70599 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80777 * 359.63871 * 20 19 18 29 29 N 1.28754 * 108.37192 * 0.23141 * 28 20 19 30 30 H 1.08998 * 109.46589 * 59.99632 * 1 2 3 31 31 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46786 * 300.00428 * 1 2 3 33 33 H 1.08997 * 109.47553 * 55.00028 * 4 2 1 34 34 H 1.09001 * 109.47011 * 174.99786 * 4 2 1 35 35 H 0.97001 * 119.99796 * 359.97438 * 5 4 2 36 36 H 0.96996 * 119.99830 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47127 * 305.00440 * 14 2 1 38 38 H 1.08997 * 109.46936 * 185.00124 * 14 2 1 39 39 H 0.97001 * 120.00041 * 0.02562 * 15 14 2 40 40 H 1.08003 * 126.58103 * 0.02562 * 19 18 16 41 41 H 1.08995 * 109.46934 * 4.71151 * 21 20 19 42 42 H 1.08997 * 109.47047 * 244.70376 * 21 20 19 43 43 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 44 44 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 45 45 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 46 46 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 47 47 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 48 48 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4424 6 6 2.0019 -0.4205 3.6855 7 1 2.5636 -1.3374 3.7863 8 6 1.6343 0.2961 4.8161 9 7 0.9502 1.4139 4.6932 10 14 2.1116 -0.3251 6.5118 11 1 2.8723 -1.5935 6.3783 12 1 2.9561 0.6899 7.1914 13 1 0.8853 -0.5660 7.3140 14 6 2.0401 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9965 -0.4130 -3.6660 17 8 2.6289 -1.4454 -3.7795 18 6 1.6067 0.3492 -4.8673 19 6 1.8875 0.0030 -6.1585 20 7 1.3592 0.9629 -6.9440 21 6 1.4107 1.0208 -8.4069 22 6 -0.0099 1.1370 -8.9631 23 1 -0.6272 0.3045 -8.6255 24 6 0.0063 1.2216 -10.5087 25 6 -1.0581 2.2856 -10.8401 26 8 -1.6412 2.7121 -9.5957 27 6 -0.6483 2.4938 -8.5703 28 7 0.7456 1.8920 -6.0917 29 7 0.9109 1.4991 -4.8768 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7996 1.2056 35 1 1.1490 0.8593 2.3518 36 1 0.6930 1.9144 5.4832 37 1 1.6054 -1.7198 -1.2952 38 1 3.1263 -0.7995 -1.2056 39 1 1.1490 0.8595 -2.3517 40 1 2.4303 -0.8710 -6.4871 41 1 1.8778 0.1136 -8.7902 42 1 1.9939 1.8883 -8.7159 43 1 0.9868 1.5395 -10.8631 44 1 -0.2633 0.2603 -10.9462 45 1 -0.5905 3.1352 -11.3376 46 1 -1.8247 1.8550 -11.4842 47 1 -1.1182 2.4272 -7.5890 48 1 0.0985 3.2876 -8.5839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714442412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:27 Heat of formation + Delta-G solvation = 18.190860 kcal Electronic energy + Delta-G solvation = -27985.239516 eV Core-core repulsion = 23884.555870 eV Total energy + Delta-G solvation = -4100.683647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59274 -40.04845 -39.43663 -36.78261 -35.83724 -34.34892 -32.91576 -32.43257 -31.28726 -30.15089 -29.77075 -27.25853 -26.50883 -25.43945 -23.68959 -23.38405 -22.52227 -22.16305 -21.44299 -20.52977 -19.89747 -18.47454 -17.29240 -17.01377 -16.67138 -16.36187 -16.13305 -16.01507 -15.70001 -15.20844 -14.97146 -14.75980 -14.58505 -14.19316 -13.99576 -13.74610 -13.56687 -13.32521 -12.99218 -12.64544 -12.58282 -12.35219 -12.25931 -12.09162 -12.00175 -11.89741 -11.52630 -11.40066 -11.01718 -10.88711 -10.79299 -10.67558 -10.53432 -10.39799 -10.24944 -10.19347 -9.93358 -9.64788 -9.64513 -8.99632 -8.84432 -6.88008 -5.73317 -3.01550 0.75267 1.45719 1.53454 3.08681 3.16938 3.25203 3.46236 3.51966 3.54185 3.63946 3.81060 3.84663 3.95726 4.29107 4.31616 4.42062 4.43458 4.60449 4.62387 4.64763 4.74718 4.92661 5.00453 5.09411 5.13218 5.23388 5.27199 5.33184 5.40486 5.45962 5.48396 5.61572 5.87150 5.90337 6.02044 6.02573 6.16146 6.27687 6.31402 6.44530 6.49807 6.71468 6.82929 6.91971 7.38540 7.66733 7.74484 8.11582 8.45788 9.57083 10.15029 10.49758 11.49737 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.001577 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.981566 B =17748.664333 C =18433.090405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.707 5.707 16 C 0.601 3.399 17 O -0.543 6.543 18 C -0.097 4.097 19 C 0.094 3.906 20 N -0.365 5.365 21 C 0.132 3.868 22 C -0.139 4.139 23 H 0.096 0.904 24 C -0.147 4.147 25 C 0.045 3.955 26 O -0.376 6.376 27 C 0.057 3.943 28 N -0.063 5.063 29 N -0.200 5.200 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.409 0.591 40 H 0.205 0.795 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 -0.590 -36.700 36.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.582 5.582 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.357 5.357 16 C 0.385 3.615 17 O -0.420 6.420 18 C -0.237 4.237 19 C -0.062 4.062 20 N -0.150 5.150 21 C 0.011 3.989 22 C -0.158 4.158 23 H 0.114 0.886 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.295 6.295 27 C -0.020 4.020 28 N -0.044 5.044 29 N -0.074 5.074 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.222 0.778 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.122 0.878 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.708 -0.047 -36.553 36.560 hybrid contribution 0.670 -0.639 0.696 1.158 sum -0.038 -0.686 -35.857 35.864 Atomic orbital electron populations 1.21801 0.94586 1.01919 1.01689 1.21563 0.96836 1.00605 0.94025 0.90389 1.20573 0.96588 0.94195 0.85372 1.42348 1.66924 1.27686 1.00574 1.19290 1.28505 1.05440 0.83677 0.91093 1.24736 1.01076 0.97432 0.97831 1.69671 1.43614 1.16641 1.28324 0.86114 0.77570 0.77808 0.84691 1.20556 1.21916 1.21918 1.21489 1.00295 0.95261 0.82624 1.45873 1.56574 1.27981 1.05313 1.16733 0.79264 0.83753 0.81797 1.90812 1.40868 1.23858 1.86426 1.21549 1.09774 0.97681 0.94653 1.23393 0.97423 0.94951 0.90445 1.50504 1.38355 1.17413 1.08687 1.22044 0.98312 1.05676 0.72879 1.23083 0.95415 1.01287 0.96064 0.88564 1.22943 1.00754 1.01049 0.93783 1.23179 0.95930 0.96243 0.87821 1.88971 1.38291 1.85578 1.16634 1.23679 0.91558 0.93826 0.92923 1.81963 1.17568 1.11895 0.92952 1.74675 1.10307 1.09094 1.13296 0.93700 0.92845 0.91119 0.95973 0.96116 0.78168 0.93604 0.91038 0.91040 0.75515 0.77811 0.87021 0.87891 0.89945 0.89661 0.92067 0.89607 0.87777 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.94 37.16 0.33 -1.88 16 2 C -0.11 -1.77 2.46 -90.61 -0.22 -1.99 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.16 3.23 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.53 5.33 -59.91 -0.32 -18.85 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.71 -9.14 5.28 -61.35 -0.32 -9.47 16 16 C 0.60 7.98 7.82 -12.47 -0.10 7.88 16 17 O -0.54 -8.45 16.86 5.28 0.09 -8.36 16 18 C -0.10 -1.08 6.99 -83.55 -0.58 -1.67 16 19 C 0.09 0.73 11.27 -16.84 -0.19 0.54 16 20 N -0.36 -2.49 3.69 -61.06 -0.23 -2.72 16 21 C 0.13 0.37 5.93 -4.04 -0.02 0.34 16 22 C -0.14 -0.54 3.37 -88.61 -0.30 -0.84 16 23 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 24 C -0.15 -0.32 6.60 -25.21 -0.17 -0.49 16 25 C 0.05 0.20 7.70 37.73 0.29 0.49 16 26 O -0.38 -3.09 11.54 -35.23 -0.41 -3.50 16 27 C 0.06 0.38 6.09 38.21 0.23 0.61 16 28 N -0.06 -0.65 11.79 60.35 0.71 0.07 16 29 N -0.20 -2.37 12.04 32.85 0.40 -1.98 16 30 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 36 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.41 4.94 7.34 -40.82 -0.30 4.64 16 40 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.11 -0.01 8.08 -51.93 -0.42 -0.43 16 42 H 0.10 0.17 8.10 -51.93 -0.42 -0.25 16 43 H 0.08 0.04 7.86 -51.93 -0.41 -0.37 16 44 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.10 0.87 7.30 -51.93 -0.38 0.49 16 48 H 0.07 0.41 8.02 -51.93 -0.42 -0.01 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -35.44 397.37 -6.97 -42.41 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.57 Total: 5.93 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.02 Total: 0.55 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.96 Total: -60.65 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.32 Total: -11.86 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.44 -6.97 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714442412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.602 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds